Wall clock time and date at job start Tue Mar 31 2020 16:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00154 * 2 1 4 4 H 1.48500 * 109.47169 * 269.99972 * 3 2 1 5 5 H 1.48500 * 109.46754 * 30.00440 * 3 2 1 6 6 H 1.48503 * 109.46890 * 150.00070 * 3 2 1 7 7 C 1.37879 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00480 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99655 * 359.97438 * 7 2 1 10 10 O 1.42896 * 110.64133 * 59.30014 * 9 7 2 11 11 C 1.55157 * 110.71955 * 182.44310 * 9 7 2 12 12 C 1.55388 * 101.36743 * 153.94563 * 11 9 7 13 13 N 1.47429 * 104.87369 * 323.01827 * 12 11 9 14 14 C 1.34774 * 125.65059 * 204.16837 * 13 12 11 15 15 O 1.21547 * 120.00255 * 174.49927 * 14 13 12 16 16 C 1.47845 * 119.99894 * 354.49466 * 14 13 12 17 17 C 1.40027 * 120.55732 * 320.16879 * 16 14 13 18 18 C 1.38359 * 118.28463 * 179.97438 * 17 16 14 19 19 C 1.38348 * 119.30407 * 359.97438 * 18 17 16 20 20 N 1.31918 * 121.08171 * 0.02692 * 19 18 17 21 21 C 1.31703 * 121.88270 * 359.67299 * 20 19 18 22 22 C 1.50692 * 119.72193 * 180.29386 * 21 20 19 23 23 F 1.39901 * 109.47334 * 248.90031 * 22 21 20 24 24 F 1.39905 * 109.47344 * 8.89685 * 22 21 20 25 25 F 1.39892 * 109.47240 * 128.89768 * 22 21 20 26 26 C 1.47028 * 108.70275 * 24.13040 * 13 12 11 27 27 H 0.96996 * 120.00003 * 0.02562 * 1 2 3 28 28 H 0.96701 * 114.00156 * 300.69920 * 10 9 7 29 29 H 1.08994 * 111.00215 * 272.11521 * 11 9 7 30 30 H 1.09002 * 111.00603 * 35.96664 * 11 9 7 31 31 H 1.08993 * 110.34716 * 204.16977 * 12 11 9 32 32 H 1.09003 * 110.44466 * 81.91263 * 12 11 9 33 33 H 1.07996 * 120.85796 * 359.97438 * 17 16 14 34 34 H 1.08003 * 120.34110 * 180.02562 * 18 17 16 35 35 H 1.08006 * 119.45977 * 180.02562 * 19 18 17 36 36 H 1.09000 * 109.87874 * 239.52438 * 26 13 12 37 37 H 1.08992 * 110.01036 * 118.43376 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.4074 -2.5938 -1.1500 11 6 2.2322 -3.6995 0.0607 12 6 1.3424 -4.7891 0.7209 13 7 0.5237 -4.0620 1.7080 14 6 -0.0421 -4.5987 2.8072 15 8 -0.6148 -3.8842 3.6065 16 6 0.0337 -6.0567 3.0407 17 6 -0.1147 -6.9564 1.9781 18 6 -0.0348 -8.3107 2.2497 19 6 0.1874 -8.7286 3.5497 20 7 0.3233 -7.8577 4.5312 21 6 0.2611 -6.5589 4.3223 22 6 0.4297 -5.6073 5.4785 23 9 -0.7884 -4.9710 5.7403 24 9 0.8374 -6.3184 6.6123 25 9 1.3967 -4.6490 5.1566 26 6 0.4274 -2.6541 1.2953 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2496 -1.8872 -1.2150 29 1 2.5454 -3.9994 -0.9393 30 1 3.0947 -3.4677 0.6855 31 1 1.9626 -5.5348 1.2181 32 1 0.7047 -5.2633 -0.0252 33 1 -0.2870 -6.6024 0.9724 34 1 -0.1440 -9.0340 1.4551 35 1 0.2506 -9.7852 3.7646 36 1 0.8370 -2.0107 2.0741 37 1 -0.6134 -2.3911 1.1068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592847607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:18 Heat of formation + Delta-G solvation = -182.929399 kcal Electronic energy + Delta-G solvation = -29445.455521 eV Core-core repulsion = 24773.428406 eV Total energy + Delta-G solvation = -4672.027115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.91480 -47.46392 -47.33199 -40.91778 -39.19087 -37.32326 -34.56462 -33.13829 -32.40486 -32.26820 -30.16517 -28.04722 -26.83120 -25.56923 -24.49653 -22.73313 -22.62021 -19.99989 -19.51619 -18.56164 -18.35992 -18.27405 -17.36000 -17.02648 -16.64572 -15.79320 -15.70115 -15.11788 -14.97143 -14.45333 -14.32321 -14.16725 -14.01338 -13.85409 -13.78325 -13.51478 -13.44831 -13.37280 -13.15545 -12.97476 -12.88633 -12.36720 -11.98272 -11.76099 -11.56810 -11.11697 -10.93024 -10.79363 -10.53528 -10.38832 -10.26326 -10.22757 -9.77440 -9.54762 -9.42930 -8.73695 -8.42164 -8.09663 -6.35417 -4.43996 0.22063 0.65652 2.50374 2.77544 3.14583 3.19880 3.26505 3.28998 3.36639 3.58252 3.88735 4.22224 4.36091 4.40519 4.52230 4.55093 4.70549 4.81156 4.91081 4.99985 5.21061 5.49322 5.52927 5.58561 5.67247 5.84472 5.95472 6.05138 6.35200 6.62052 6.73179 6.77719 7.16183 7.23925 7.26207 7.66757 7.88255 7.96491 8.37647 8.59611 9.22287 9.31878 10.72594 Molecular weight = 330.10amu Principal moments of inertia in cm(-1) A = 0.017965 B = 0.004057 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.209682 B = 6900.527097 C = 7810.027315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.249 3.751 10 O -0.585 6.585 11 C -0.117 4.117 12 C 0.096 3.904 13 N -0.596 5.596 14 C 0.554 3.446 15 O -0.521 6.521 16 C -0.117 4.117 17 C -0.047 4.047 18 C -0.145 4.145 19 C 0.113 3.887 20 N -0.447 5.447 21 C 0.079 3.921 22 C 0.523 3.477 23 F -0.152 7.152 24 F -0.170 7.170 25 F -0.165 7.165 26 C 0.102 3.898 27 H 0.271 0.729 28 H 0.385 0.615 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.173 0.827 36 H 0.072 0.928 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.525 -16.687 3.240 17.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.086 0.914 9 C 0.209 3.791 10 O -0.395 6.395 11 C -0.154 4.154 12 C -0.027 4.027 13 N -0.328 5.328 14 C 0.339 3.661 15 O -0.398 6.398 16 C -0.122 4.122 17 C -0.073 4.073 18 C -0.165 4.165 19 C -0.045 4.045 20 N -0.154 5.154 21 C -0.061 4.061 22 C 0.468 3.532 23 F -0.133 7.133 24 F -0.151 7.151 25 F -0.146 7.146 26 C -0.019 4.019 27 H 0.081 0.919 28 H 0.236 0.764 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.174 0.826 34 H 0.171 0.829 35 H 0.190 0.810 36 H 0.090 0.910 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.533 -16.980 4.500 17.574 hybrid contribution -0.112 1.738 -0.581 1.836 sum 0.422 -15.242 3.919 15.744 Atomic orbital electron populations 1.69619 1.06035 1.28109 1.49641 1.25064 0.95056 0.99840 0.93198 0.86386 0.79854 0.82318 0.78299 1.20344 1.20937 1.19644 1.21502 0.93751 0.90009 1.52487 0.91421 1.19485 0.86121 0.92211 0.81309 1.86080 1.51726 1.55047 1.46650 1.22848 0.97535 0.94708 1.00352 1.22586 0.93424 0.95742 0.90948 1.48674 1.49039 1.13024 1.22102 1.17594 0.80755 0.85895 0.81860 1.90881 1.43825 1.61118 1.44019 1.20919 1.01114 0.96361 0.93839 1.22037 0.93177 0.92624 0.99435 1.22362 0.98920 0.96365 0.98850 1.22990 0.93822 0.99562 0.88087 1.67269 1.11126 1.00819 1.36234 1.21091 1.01390 0.91927 0.91697 1.17668 0.75281 0.79088 0.81204 1.93302 1.43364 1.82520 1.94133 1.93203 1.90520 1.78206 1.53155 1.93258 1.63641 1.65234 1.92506 1.23166 1.02078 0.77193 0.99422 0.91855 0.76361 0.90176 0.90263 0.91993 0.91362 0.82600 0.82933 0.81006 0.90996 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.16 10.96 55.43 0.61 -22.55 16 2 C 0.07 1.82 5.27 -17.82 -0.09 1.73 16 3 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.54 -13.62 8.11 -34.44 -0.28 -13.90 16 8 H 0.07 1.69 7.77 -52.49 -0.41 1.28 16 9 C 0.25 5.70 0.85 -89.93 -0.08 5.63 16 10 O -0.59 -13.83 13.07 -35.23 -0.46 -14.30 16 11 C -0.12 -2.16 6.26 -24.32 -0.15 -2.31 16 12 C 0.10 1.53 5.31 -2.27 -0.01 1.52 16 13 N -0.60 -11.59 3.33 -171.32 -0.57 -12.16 16 14 C 0.55 10.73 6.34 -12.33 -0.08 10.65 16 15 O -0.52 -11.85 13.84 5.32 0.07 -11.78 16 16 C -0.12 -1.79 5.29 -104.82 -0.55 -2.35 16 17 C -0.05 -0.52 8.39 -38.87 -0.33 -0.85 16 18 C -0.15 -1.15 10.10 -39.50 -0.40 -1.55 16 19 C 0.11 1.01 11.17 -17.47 -0.20 0.81 16 20 N -0.45 -5.87 9.75 -9.15 -0.09 -5.96 16 21 C 0.08 1.23 6.30 -82.17 -0.52 0.71 16 22 C 0.52 8.94 2.79 36.00 0.10 9.04 16 23 F -0.15 -2.83 15.16 2.25 0.03 -2.80 16 24 F -0.17 -2.68 16.87 2.25 0.04 -2.65 16 25 F -0.17 -3.06 15.49 2.25 0.03 -3.02 16 26 C 0.10 2.36 5.38 -3.06 -0.02 2.35 16 27 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.39 9.45 7.23 45.56 0.33 9.78 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.08 1.44 8.04 -51.93 -0.42 1.03 16 31 H 0.06 0.83 7.40 -51.93 -0.38 0.45 16 32 H 0.07 0.98 7.04 -51.93 -0.37 0.61 16 33 H 0.16 1.55 6.21 -52.49 -0.33 1.22 16 34 H 0.15 0.61 8.06 -52.48 -0.42 0.19 16 35 H 0.17 0.85 8.06 -52.48 -0.42 0.43 16 36 H 0.07 1.84 7.82 -51.93 -0.41 1.44 16 37 H 0.07 1.74 7.99 -51.93 -0.42 1.33 16 LS Contribution 322.96 15.07 4.87 4.87 Total: -1.00 -30.04 322.96 -5.88 -35.92 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -2.80 Total: 7.86 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: -2.60 Total: 11.48 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: -0.05 Total: -40.66 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.39 Total: -26.07 kcal Atomic # 9 Polarization: -8.57 SS G_CDS: 0.11 Total: -8.47 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.04 -5.88 -35.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.006 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds