Wall clock time and date at job start Tue Mar 31 2020 16:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00003 * 2 1 4 4 H 1.48508 * 109.47268 * 239.99296 * 3 2 1 5 5 H 1.48499 * 109.47347 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47311 * 119.99830 * 3 2 1 7 7 C 1.37882 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00016 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99650 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46687 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00213 * 275.81698 * 10 9 7 12 12 C 1.50700 * 109.47122 * 269.99852 * 11 10 9 13 13 C 1.34519 * 125.78901 * 90.00189 * 12 11 10 14 14 C 1.41383 * 106.84453 * 180.02562 * 13 12 11 15 15 C 1.34519 * 106.83767 * 359.97438 * 14 13 12 16 16 O 1.34299 * 108.41943 * 359.74022 * 15 14 13 17 17 C 1.34779 * 119.99731 * 95.82078 * 10 9 7 18 18 O 1.21548 * 120.00068 * 184.94596 * 17 10 9 19 19 C 1.47857 * 120.00144 * 4.94691 * 17 10 9 20 20 C 1.39680 * 120.48379 * 312.00376 * 19 17 10 21 21 N 1.31742 * 120.88809 * 180.02562 * 20 19 17 22 22 C 1.31746 * 122.04796 * 0.02562 * 21 20 19 23 23 C 1.39687 * 120.87797 * 359.97438 * 22 21 20 24 24 C 1.47724 * 120.49862 * 179.97438 * 23 22 21 25 25 O 1.21470 * 120.00248 * 180.02562 * 24 23 22 26 26 O 1.34716 * 119.99952 * 0.02562 * 24 23 22 27 27 C 1.39712 * 120.48963 * 132.03159 * 19 17 10 28 28 H 0.97002 * 120.00238 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47107 * 60.00384 * 9 7 2 30 30 H 1.08993 * 109.47565 * 299.99778 * 9 7 2 31 31 H 1.08992 * 109.47158 * 30.00415 * 11 10 9 32 32 H 1.09003 * 109.47024 * 150.00366 * 11 10 9 33 33 H 1.08004 * 126.57480 * 359.96170 * 13 12 11 34 34 H 1.07990 * 126.58035 * 179.97438 * 14 13 12 35 35 H 1.07991 * 125.78511 * 180.02562 * 15 14 13 36 36 H 1.08005 * 119.55931 * 0.02562 * 20 19 17 37 37 H 1.07998 * 119.56276 * 179.97438 * 22 21 20 38 38 H 0.96700 * 116.99481 * 180.02562 * 26 24 23 39 39 H 1.07995 * 120.92411 * 0.24344 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.7768 -4.0859 -1.2616 12 6 1.8992 -5.1667 -1.8384 13 6 0.8691 -4.9768 -2.6823 14 6 0.3306 -6.2531 -2.9653 15 6 1.0643 -7.1467 -2.2778 16 8 2.0167 -6.4835 -1.6019 17 6 2.5510 -4.2017 1.1618 18 8 3.4071 -5.0645 1.1730 19 6 1.8912 -3.7986 2.4221 20 6 1.7548 -2.4476 2.7498 21 7 1.1688 -2.0795 3.8708 22 6 0.6882 -2.9560 4.7290 23 6 0.7815 -4.3275 4.4810 24 6 0.2402 -5.3030 5.4494 25 8 0.3267 -6.4937 5.2249 26 8 -0.3493 -4.8721 6.5814 27 6 1.3955 -4.7632 3.3028 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6240 -2.5568 0.8902 31 1 2.8411 -3.2560 -1.9652 32 1 3.7742 -4.4862 -1.0798 33 1 0.5196 -4.0307 -3.0687 34 1 -0.5086 -6.4691 -3.6097 35 1 0.9158 -8.2163 -2.2741 36 1 2.1349 -1.6947 2.0752 37 1 0.2157 -2.6096 5.6363 38 1 -0.6879 -5.5479 7.1846 39 1 1.4883 -5.8163 3.0820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833760607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:32 Heat of formation + Delta-G solvation = -64.504674 kcal Electronic energy + Delta-G solvation = -27893.413220 eV Core-core repulsion = 23768.378127 eV Total energy + Delta-G solvation = -4125.035093 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.24249 -40.74990 -39.75412 -38.47717 -36.18763 -35.46948 -33.05890 -32.60372 -32.46717 -31.84902 -30.09116 -27.58761 -26.00868 -25.08881 -23.85695 -22.97940 -21.75113 -21.39974 -20.46081 -19.36300 -18.09403 -17.38921 -17.27348 -16.86394 -16.45510 -16.39316 -15.95653 -15.73101 -15.46422 -15.21793 -14.60525 -14.52610 -13.91849 -13.55651 -13.38736 -13.02871 -12.97741 -12.60735 -12.54539 -12.50942 -12.34793 -12.27481 -11.69634 -11.41925 -11.41141 -11.06031 -10.94005 -10.86314 -10.36459 -10.02422 -9.87059 -9.75602 -9.62932 -9.16342 -8.97189 -8.67294 -8.26526 -8.05856 -6.36377 -4.48036 0.62266 1.14311 1.95138 2.52614 2.78435 2.89117 3.10030 3.17459 3.23765 3.25432 3.40401 3.73822 4.01976 4.20116 4.58427 4.80698 4.87120 4.95574 4.99457 5.10253 5.16715 5.30130 5.33694 5.43648 5.66730 5.83431 5.96723 6.02982 6.05996 6.21816 6.27185 6.34012 6.36272 6.45782 6.77533 6.81274 6.98692 7.23120 7.45267 7.56255 7.77243 7.80894 8.00151 8.08078 8.52912 8.69065 9.21554 10.69039 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.007327 B = 0.005816 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3820.324128 B = 4812.988010 C = 7779.777681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.076 3.924 3 Si 0.897 3.103 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.559 4.559 8 H 0.068 0.932 9 C 0.229 3.771 10 N -0.584 5.584 11 C 0.197 3.803 12 C -0.020 4.020 13 C -0.198 4.198 14 C -0.217 4.217 15 C -0.050 4.050 16 O -0.168 6.168 17 C 0.567 3.433 18 O -0.550 6.550 19 C -0.188 4.188 20 C 0.189 3.811 21 N -0.491 5.491 22 C 0.173 3.827 23 C -0.208 4.208 24 C 0.539 3.461 25 O -0.515 6.515 26 O -0.511 6.511 27 C 0.032 3.968 28 H 0.270 0.730 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.197 0.803 36 H 0.208 0.792 37 H 0.169 0.831 38 H 0.414 0.586 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.094 -7.414 3.259 8.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.724 3.276 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.597 4.597 8 H 0.087 0.913 9 C 0.110 3.890 10 N -0.313 5.313 11 C 0.074 3.926 12 C -0.072 4.072 13 C -0.218 4.218 14 C -0.236 4.236 15 C -0.118 4.118 16 O -0.064 6.064 17 C 0.354 3.646 18 O -0.429 6.429 19 C -0.193 4.193 20 C 0.034 3.966 21 N -0.198 5.198 22 C 0.014 3.986 23 C -0.212 4.212 24 C 0.383 3.617 25 O -0.405 6.405 26 O -0.323 6.323 27 C 0.006 3.994 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.136 0.864 32 H 0.112 0.888 33 H 0.168 0.832 34 H 0.162 0.838 35 H 0.214 0.786 36 H 0.224 0.776 37 H 0.186 0.814 38 H 0.272 0.728 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.506 -6.969 3.286 7.721 hybrid contribution -0.336 -0.453 -0.035 0.565 sum -0.842 -7.421 3.250 8.146 Atomic orbital electron populations 1.69904 1.06152 1.28036 1.46945 1.24965 0.94845 0.99449 0.93834 0.86548 0.79675 0.82245 0.79124 1.19946 1.20984 1.19584 1.21406 0.93901 0.90126 1.54288 0.91338 1.19718 0.87648 0.82235 0.99399 1.48182 1.45122 1.34040 1.03978 1.19727 0.94702 0.91906 0.86274 1.23175 1.01035 0.82305 1.00653 1.21692 0.98234 0.99094 1.02794 1.21802 1.03569 0.92926 1.05306 1.23977 0.91581 0.98282 0.98002 1.84095 1.46580 1.18732 1.56947 1.17962 0.82117 0.81161 0.83398 1.90739 1.32408 1.32978 1.86776 1.20930 1.05231 0.95508 0.97621 1.24888 0.85782 0.94896 0.91048 1.68038 1.10738 1.37493 1.03567 1.23435 0.90205 0.87678 0.97254 1.19833 1.09986 0.94398 0.96936 1.20584 0.74197 0.87050 0.79856 1.90893 1.55319 1.17976 1.76277 1.84550 1.70643 1.45180 1.31904 1.21613 0.87957 1.00679 0.89169 0.91993 0.94073 0.94032 0.86426 0.88831 0.83246 0.83823 0.78646 0.77605 0.81375 0.72757 0.83337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.23 13.29 55.43 0.74 -21.50 16 2 C 0.08 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.90 18.94 29.54 -169.99 -5.02 13.92 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 7 C -0.56 -12.85 6.86 -34.44 -0.24 -13.08 16 8 H 0.07 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.23 5.00 4.67 -5.19 -0.02 4.97 16 10 N -0.58 -11.60 2.44 -177.55 -0.43 -12.03 16 11 C 0.20 3.47 5.99 -5.19 -0.03 3.44 16 12 C -0.02 -0.35 6.90 -35.62 -0.25 -0.60 16 13 C -0.20 -3.20 10.81 -39.70 -0.43 -3.63 16 14 C -0.22 -3.08 10.91 -39.70 -0.43 -3.51 16 15 C -0.05 -0.70 12.09 29.42 0.36 -0.35 16 16 O -0.17 -2.95 10.65 5.72 0.06 -2.89 16 17 C 0.57 11.65 7.27 -12.32 -0.09 11.56 16 18 O -0.55 -12.25 16.58 5.32 0.09 -12.16 16 19 C -0.19 -3.60 4.96 -104.87 -0.52 -4.12 16 20 C 0.19 3.68 8.69 -17.05 -0.15 3.53 16 21 N -0.49 -8.94 10.33 -12.56 -0.13 -9.07 16 22 C 0.17 2.62 10.78 -17.05 -0.18 2.44 16 23 C -0.21 -3.21 5.88 -104.89 -0.62 -3.83 16 24 C 0.54 7.43 8.28 34.61 0.29 7.71 16 25 O -0.52 -8.43 17.20 -19.24 -0.33 -8.76 16 26 O -0.51 -4.96 12.70 -40.54 -0.51 -5.48 16 27 C 0.03 0.55 9.41 -38.44 -0.36 0.19 16 28 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 29 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 30 H 0.04 0.97 5.39 -51.93 -0.28 0.69 16 31 H 0.12 1.89 8.07 -51.93 -0.42 1.47 16 32 H 0.09 1.62 7.36 -51.93 -0.38 1.24 16 33 H 0.15 2.31 8.06 -52.48 -0.42 1.88 16 34 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.20 1.93 8.06 -52.49 -0.42 1.50 16 36 H 0.21 4.37 4.73 -52.48 -0.25 4.12 16 37 H 0.17 2.00 7.61 -52.49 -0.40 1.60 16 38 H 0.41 2.01 9.11 45.56 0.42 2.43 16 39 H 0.15 2.57 7.73 -52.49 -0.41 2.17 16 LS Contribution 351.41 15.07 5.30 5.30 Total: -1.00 -30.27 351.41 -5.98 -36.25 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -2.95 Total: 10.00 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -2.78 Total: 6.43 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.17 Total: -42.60 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.70 Total: -29.29 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.27 -5.98 -36.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.257 kcal (2) G-P(sol) polarization free energy of solvation -30.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds