Wall clock time and date at job start Tue Mar 31 2020 16:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00003 * 2 1 4 4 H 1.48508 * 109.47268 * 239.99296 * 3 2 1 5 5 H 1.48499 * 109.47347 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47311 * 119.99830 * 3 2 1 7 7 C 1.37882 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00016 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99650 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46687 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00213 * 275.81698 * 10 9 7 12 12 C 1.50700 * 109.47122 * 269.99852 * 11 10 9 13 13 C 1.34519 * 125.78901 * 90.00189 * 12 11 10 14 14 C 1.41383 * 106.84453 * 180.02562 * 13 12 11 15 15 C 1.34519 * 106.83767 * 359.97438 * 14 13 12 16 16 O 1.34299 * 108.41943 * 359.74022 * 15 14 13 17 17 C 1.34779 * 119.99731 * 95.82078 * 10 9 7 18 18 O 1.21548 * 120.00068 * 184.94596 * 17 10 9 19 19 C 1.47857 * 120.00144 * 4.94691 * 17 10 9 20 20 C 1.39680 * 120.48379 * 312.00376 * 19 17 10 21 21 N 1.31742 * 120.88809 * 180.02562 * 20 19 17 22 22 C 1.31746 * 122.04796 * 0.02562 * 21 20 19 23 23 C 1.39687 * 120.87797 * 359.97438 * 22 21 20 24 24 C 1.47724 * 120.49862 * 179.97438 * 23 22 21 25 25 O 1.21470 * 120.00248 * 180.02562 * 24 23 22 26 26 O 1.34716 * 119.99952 * 0.02562 * 24 23 22 27 27 C 1.39712 * 120.48963 * 132.03159 * 19 17 10 28 28 H 0.97002 * 120.00238 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47107 * 60.00384 * 9 7 2 30 30 H 1.08993 * 109.47565 * 299.99778 * 9 7 2 31 31 H 1.08992 * 109.47158 * 30.00415 * 11 10 9 32 32 H 1.09003 * 109.47024 * 150.00366 * 11 10 9 33 33 H 1.08004 * 126.57480 * 359.96170 * 13 12 11 34 34 H 1.07990 * 126.58035 * 179.97438 * 14 13 12 35 35 H 1.07991 * 125.78511 * 180.02562 * 15 14 13 36 36 H 1.08005 * 119.55931 * 0.02562 * 20 19 17 37 37 H 1.07998 * 119.56276 * 179.97438 * 22 21 20 38 38 H 0.96700 * 116.99481 * 180.02562 * 26 24 23 39 39 H 1.07995 * 120.92411 * 0.24344 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.7768 -4.0859 -1.2616 12 6 1.8992 -5.1667 -1.8384 13 6 0.8691 -4.9768 -2.6823 14 6 0.3306 -6.2531 -2.9653 15 6 1.0643 -7.1467 -2.2778 16 8 2.0167 -6.4835 -1.6019 17 6 2.5510 -4.2017 1.1618 18 8 3.4071 -5.0645 1.1730 19 6 1.8912 -3.7986 2.4221 20 6 1.7548 -2.4476 2.7498 21 7 1.1688 -2.0795 3.8708 22 6 0.6882 -2.9560 4.7290 23 6 0.7815 -4.3275 4.4810 24 6 0.2402 -5.3030 5.4494 25 8 0.3267 -6.4937 5.2249 26 8 -0.3493 -4.8721 6.5814 27 6 1.3955 -4.7632 3.3028 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6240 -2.5568 0.8902 31 1 2.8411 -3.2560 -1.9652 32 1 3.7742 -4.4862 -1.0798 33 1 0.5196 -4.0307 -3.0687 34 1 -0.5086 -6.4691 -3.6097 35 1 0.9158 -8.2163 -2.2741 36 1 2.1349 -1.6947 2.0752 37 1 0.2157 -2.6096 5.6363 38 1 -0.6879 -5.5479 7.1846 39 1 1.4883 -5.8163 3.0820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833760607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:31 Heat of formation + Delta-G solvation = -83.888216 kcal Electronic energy + Delta-G solvation = -27894.253754 eV Core-core repulsion = 23768.378127 eV Total energy + Delta-G solvation = -4125.875627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.48158 -42.07168 -41.02917 -39.91889 -37.19626 -37.10480 -34.77063 -33.94050 -33.82710 -33.23068 -31.45235 -29.30754 -27.38242 -26.37169 -25.39901 -24.59034 -22.99736 -22.62715 -21.71561 -20.72872 -19.23350 -18.87044 -18.71186 -18.27625 -17.96098 -17.73367 -17.36537 -16.92361 -16.77940 -16.62752 -16.30769 -15.93529 -15.28662 -14.87495 -14.64705 -14.48945 -14.35685 -14.25769 -13.97793 -13.75792 -13.71927 -13.55424 -13.13565 -12.93347 -12.66481 -12.63880 -12.52147 -12.16616 -12.07185 -11.79209 -11.37812 -11.19550 -10.84884 -10.68589 -10.55293 -10.27370 -9.77552 -9.43998 -8.21330 -6.36875 -0.68943 -0.24572 0.69580 1.30026 1.48964 1.50954 1.53271 1.56980 1.68744 1.85987 2.13405 2.30066 2.44132 2.64456 3.07230 3.26596 3.46104 3.57582 3.65607 3.80170 3.93236 4.06600 4.14020 4.16035 4.35959 4.54432 4.57265 4.72738 4.74713 4.89718 4.92086 5.02309 5.16542 5.18613 5.36531 5.47155 5.53318 5.62126 5.71269 5.98523 6.20872 6.36614 6.67983 6.73878 6.90520 7.02185 7.35463 8.83940 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.007327 B = 0.005816 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3820.324128 B = 4812.988010 C = 7779.777681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.038 3.962 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.554 4.554 8 H 0.067 0.933 9 C 0.247 3.753 10 N -0.583 5.583 11 C 0.196 3.804 12 C -0.048 4.048 13 C -0.201 4.201 14 C -0.224 4.224 15 C -0.043 4.043 16 O -0.192 6.192 17 C 0.564 3.436 18 O -0.573 6.573 19 C -0.203 4.203 20 C 0.181 3.819 21 N -0.507 5.507 22 C 0.185 3.815 23 C -0.201 4.201 24 C 0.553 3.447 25 O -0.543 6.543 26 O -0.492 6.492 27 C 0.029 3.971 28 H 0.269 0.731 29 H 0.026 0.974 30 H 0.028 0.972 31 H 0.127 0.873 32 H 0.091 0.909 33 H 0.151 0.849 34 H 0.173 0.827 35 H 0.238 0.762 36 H 0.187 0.813 37 H 0.209 0.791 38 H 0.439 0.561 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.922 -7.948 4.307 9.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.165 4.165 3 Si 0.776 3.224 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.592 4.592 8 H 0.085 0.915 9 C 0.127 3.873 10 N -0.311 5.311 11 C 0.073 3.927 12 C -0.099 4.099 13 C -0.221 4.221 14 C -0.242 4.242 15 C -0.111 4.111 16 O -0.089 6.089 17 C 0.352 3.648 18 O -0.455 6.455 19 C -0.208 4.208 20 C 0.026 3.974 21 N -0.215 5.215 22 C 0.027 3.973 23 C -0.204 4.204 24 C 0.397 3.603 25 O -0.434 6.434 26 O -0.306 6.306 27 C 0.003 3.997 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.145 0.855 32 H 0.109 0.891 33 H 0.169 0.831 34 H 0.191 0.809 35 H 0.254 0.746 36 H 0.203 0.797 37 H 0.225 0.775 38 H 0.302 0.698 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.338 -7.499 4.344 8.769 hybrid contribution -0.154 -0.383 -0.274 0.496 sum -1.492 -7.883 4.069 8.996 Atomic orbital electron populations 1.69996 1.07335 1.28504 1.48502 1.25556 0.95333 1.01982 0.93653 0.85714 0.78539 0.79033 0.79150 1.19459 1.21154 1.19379 1.21526 0.93805 0.90621 1.53239 0.91481 1.19356 0.87499 0.82541 0.97876 1.48176 1.44618 1.33504 1.04837 1.19797 0.94678 0.92631 0.85545 1.23033 1.02155 0.82502 1.02215 1.21911 0.97786 1.00244 1.02156 1.22156 1.04435 0.91821 1.05832 1.24870 0.89937 1.00005 0.96259 1.84075 1.47988 1.18852 1.57958 1.18214 0.81846 0.80769 0.83983 1.90707 1.33485 1.34078 1.87195 1.20811 1.06547 0.95846 0.97608 1.24448 0.86913 0.94387 0.91700 1.68016 1.11261 1.38558 1.03656 1.23988 0.88716 0.87139 0.97441 1.19987 1.08789 0.95137 0.96522 1.20135 0.73891 0.85888 0.80383 1.90901 1.56501 1.18947 1.77093 1.84481 1.69549 1.45901 1.30695 1.21653 0.88077 1.00221 0.89778 0.92140 0.95614 0.95390 0.85523 0.89083 0.83125 0.80945 0.74571 0.79680 0.77489 0.69782 0.83607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.72 13.29 21.45 0.28 -46.44 16 2 C 0.04 1.83 5.46 84.66 0.46 2.29 16 3 Si 0.95 38.92 29.54 68.60 2.03 40.95 16 4 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 5 H -0.29 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 7 C -0.55 -25.97 6.86 25.60 0.18 -25.80 16 8 H 0.07 3.12 7.81 -2.91 -0.02 3.10 16 9 C 0.25 11.14 4.67 85.63 0.40 11.54 16 10 N -0.58 -23.99 2.44 -833.92 -2.04 -26.02 16 11 C 0.20 7.14 5.99 85.63 0.51 7.65 16 12 C -0.05 -1.71 6.90 24.83 0.17 -1.54 16 13 C -0.20 -6.48 10.81 22.19 0.24 -6.24 16 14 C -0.22 -5.98 10.91 22.19 0.24 -5.74 16 15 C -0.04 -1.14 12.09 66.97 0.81 -0.33 16 16 O -0.19 -6.73 10.65 -2.44 -0.03 -6.76 16 17 C 0.56 23.99 7.27 86.79 0.63 24.62 16 18 O -0.57 -26.38 16.58 -3.87 -0.06 -26.45 16 19 C -0.20 -7.96 4.96 -20.03 -0.10 -8.06 16 20 C 0.18 7.18 8.69 85.05 0.74 7.92 16 21 N -0.51 -18.15 10.33 -193.65 -2.00 -20.15 16 22 C 0.19 5.22 10.78 85.06 0.92 6.14 16 23 C -0.20 -5.88 5.88 -20.04 -0.12 -6.00 16 24 C 0.55 13.81 8.28 70.33 0.58 14.39 16 25 O -0.54 -16.78 17.20 19.93 0.34 -16.44 16 26 O -0.49 -7.59 12.70 -56.26 -0.71 -8.30 16 27 C 0.03 1.00 9.41 23.01 0.22 1.22 16 28 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 29 H 0.03 1.23 8.11 -2.39 -0.02 1.21 16 30 H 0.03 1.36 5.39 -2.39 -0.01 1.34 16 31 H 0.13 4.24 8.07 -2.39 -0.02 4.22 16 32 H 0.09 3.31 7.36 -2.39 -0.02 3.29 16 33 H 0.15 4.70 8.06 -2.91 -0.02 4.68 16 34 H 0.17 3.50 8.06 -2.92 -0.02 3.47 16 35 H 0.24 3.89 8.06 -2.91 -0.02 3.87 16 36 H 0.19 8.13 4.73 -2.91 -0.01 8.12 16 37 H 0.21 4.11 7.61 -2.91 -0.02 4.09 16 38 H 0.44 2.39 9.11 -74.06 -0.67 1.72 16 39 H 0.15 5.12 7.73 -2.91 -0.02 5.10 16 Total: -1.00 -66.13 351.41 4.15 -61.98 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.46 Total: 25.55 kcal Atomic # 6 Polarization: 16.19 SS G_CDS: 5.88 Total: 22.07 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -3.75 Total: -92.61 kcal Atomic # 8 Polarization: -57.48 SS G_CDS: -0.46 Total: -57.94 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Total: -66.13 4.15 -61.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.904 kcal (2) G-P(sol) polarization free energy of solvation -66.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds