Wall clock time and date at job start Tue Mar 31 2020 16:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00165 * 2 1 4 4 H 1.48491 * 109.47292 * 269.99861 * 3 2 1 5 5 H 1.48505 * 109.47107 * 29.99869 * 3 2 1 6 6 H 1.48504 * 109.47068 * 149.99699 * 3 2 1 7 7 C 1.38812 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00029 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99842 * 359.97438 * 7 2 1 10 10 C 1.47428 * 125.65074 * 38.77294 * 9 7 2 11 11 C 1.54902 * 104.83414 * 155.82050 * 10 9 7 12 12 C 1.55156 * 101.58340 * 37.00993 * 11 10 9 13 13 C 1.47028 * 125.65201 * 218.71070 * 9 7 2 14 14 H 1.08995 * 109.88183 * 300.53055 * 13 9 7 15 15 C 1.53008 * 109.87684 * 61.69397 * 13 9 7 16 16 N 1.46503 * 109.46932 * 176.60878 * 15 13 9 17 17 C 1.34770 * 120.00005 * 185.26689 * 16 15 13 18 18 O 1.21636 * 119.99911 * 0.02562 * 17 16 15 19 19 C 1.47188 * 120.00075 * 180.02562 * 17 16 15 20 20 C 1.44423 * 123.46134 * 353.47188 * 19 17 16 21 21 C 1.32769 * 113.08295 * 179.80516 * 20 19 17 22 22 S 1.75502 * 110.57676 * 0.44638 * 21 20 19 23 23 C 1.36009 * 123.46224 * 173.76661 * 19 17 16 24 24 C 1.50708 * 124.59064 * 359.97438 * 23 19 17 25 25 F 1.39898 * 109.47180 * 192.78918 * 24 23 19 26 26 F 1.39896 * 109.46934 * 312.79397 * 24 23 19 27 27 H 0.97006 * 119.99666 * 0.02562 * 1 2 3 28 28 H 1.09011 * 110.36009 * 36.98029 * 10 9 7 29 29 H 1.08992 * 110.45721 * 274.71351 * 10 9 7 30 30 H 1.09010 * 111.00534 * 278.93254 * 11 10 9 31 31 H 1.08999 * 111.00325 * 155.09129 * 11 10 9 32 32 H 1.09005 * 110.71431 * 82.85655 * 12 11 10 33 33 H 1.08996 * 110.72416 * 206.13085 * 12 11 10 34 34 H 1.08997 * 109.46946 * 296.60918 * 15 13 9 35 35 H 1.08997 * 109.47083 * 56.61147 * 15 13 9 36 36 H 0.97000 * 119.99594 * 5.27283 * 16 15 13 37 37 H 1.07999 * 123.45580 * 0.02727 * 20 19 17 38 38 H 1.07998 * 124.71000 * 180.21766 * 21 20 19 39 39 H 1.09003 * 109.46843 * 72.79164 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 0.0867 -2.6650 -0.7503 11 6 0.0686 -4.2032 -0.9321 12 6 0.6591 -4.6836 0.4199 13 6 1.7046 -3.5965 0.7462 14 1 2.6948 -3.9291 0.4350 15 6 1.6991 -3.3032 2.2479 16 7 1.9986 -4.5324 2.9866 17 6 1.9434 -4.5398 4.3331 18 8 1.6444 -3.5260 4.9351 19 6 2.2449 -5.7746 5.0753 20 6 2.4741 -7.0505 4.4387 21 6 2.7325 -8.0246 5.3030 22 16 2.6930 -7.4156 6.9485 23 6 2.3306 -5.8325 6.4315 24 6 2.1320 -4.6561 7.3523 25 9 2.5712 -4.9907 8.6377 26 9 2.8663 -3.5637 6.8782 27 1 -0.4850 0.8401 -0.0004 28 1 0.1116 -2.1685 -1.7205 29 1 -0.7839 -2.3399 -0.1809 30 1 0.7032 -4.5057 -1.7652 31 1 -0.9495 -4.5688 -1.0658 32 1 -0.1139 -4.7181 1.1877 33 1 1.1368 -5.6569 0.3081 34 1 2.4542 -2.5503 2.4738 35 1 0.7172 -2.9327 2.5421 36 1 2.2368 -5.3409 2.5064 37 1 2.4423 -7.1964 3.3690 38 1 2.9350 -9.0501 5.0314 39 1 1.0741 -4.3956 7.3861 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028290880.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:02 Heat of formation + Delta-G solvation = -83.050698 kcal Electronic energy + Delta-G solvation = -26042.138915 eV Core-core repulsion = 21940.656041 eV Total energy + Delta-G solvation = -4101.482873 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.095 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.00437 -46.96184 -39.82304 -37.79720 -36.91259 -34.27776 -32.50865 -31.25752 -29.72738 -29.01141 -26.75199 -24.91600 -24.18706 -23.03016 -21.67013 -20.33058 -19.68269 -19.27278 -18.65286 -17.47518 -17.31675 -16.67652 -16.41152 -15.74087 -15.35249 -14.99212 -14.84403 -14.67186 -14.11768 -13.90711 -13.83530 -13.49206 -13.33377 -13.19335 -12.77630 -12.72134 -12.61642 -12.19950 -11.92611 -11.74718 -11.52130 -11.26372 -11.24148 -10.89217 -10.78336 -10.26173 -10.10916 -10.08991 -9.99192 -9.82013 -9.69559 -9.41309 -8.85011 -8.57043 -8.50473 -6.56603 -5.84101 -3.40185 0.30906 1.04190 1.49623 1.72732 3.35740 3.40136 3.41537 3.44289 3.46112 3.53815 4.09552 4.44617 4.51733 4.69185 4.81741 4.98101 5.07183 5.28432 5.40329 5.42805 5.55946 5.57338 5.61080 5.79215 5.83103 6.10393 6.14183 6.23106 6.44187 6.55301 6.58879 6.71507 6.87947 7.09201 7.24384 7.59918 7.77061 7.79018 8.34695 8.45347 9.11129 9.69691 10.51097 11.24993 Molecular weight = 330.10amu Principal moments of inertia in cm(-1) A = 0.015885 B = 0.003309 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.237521 B = 8459.440952 C = 9816.892029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.021 3.979 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.580 5.580 10 C 0.162 3.838 11 C -0.144 4.144 12 C -0.127 4.127 13 C 0.149 3.851 14 H 0.036 0.964 15 C 0.113 3.887 16 N -0.712 5.712 17 C 0.560 3.440 18 O -0.525 6.525 19 C -0.112 4.112 20 C -0.111 4.111 21 C -0.223 4.223 22 S 0.230 5.770 23 C -0.256 4.256 24 C 0.350 3.650 25 F -0.204 7.204 26 F -0.170 7.170 27 H 0.256 0.744 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.394 0.606 37 H 0.156 0.844 38 H 0.175 0.825 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.013 -19.342 10.685 22.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.180 4.180 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.304 5.304 10 C 0.037 3.963 11 C -0.182 4.182 12 C -0.165 4.165 13 C 0.041 3.959 14 H 0.053 0.947 15 C -0.011 4.011 16 N -0.362 5.362 17 C 0.344 3.656 18 O -0.402 6.402 19 C -0.131 4.131 20 C -0.141 4.141 21 C -0.359 4.359 22 S 0.497 5.503 23 C -0.376 4.376 24 C 0.294 3.706 25 F -0.185 7.185 26 F -0.151 7.151 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.228 0.772 37 H 0.173 0.827 38 H 0.192 0.808 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.954 -18.999 12.502 22.934 hybrid contribution 0.392 1.238 -1.628 2.083 sum 3.347 -17.761 10.873 21.092 Atomic orbital electron populations 1.69920 1.05486 1.25861 1.52281 1.25476 0.95472 0.98471 0.98585 0.86300 0.79396 0.83428 0.77707 1.21251 1.21398 1.20098 1.18765 0.89847 0.81751 1.47821 0.91716 1.44234 1.28074 1.09106 1.48998 1.21450 0.90431 0.88868 0.95542 1.22896 0.99280 0.99768 0.96296 1.22593 0.98646 0.97080 0.98142 1.21237 0.95991 0.89578 0.89061 0.94664 1.22239 1.01856 0.84470 0.92550 1.46023 1.69515 1.15222 1.05488 1.17547 0.78659 0.86726 0.82673 1.90863 1.47558 1.33502 1.68297 1.20404 1.05395 0.95545 0.91729 1.21275 1.01358 0.90218 1.01207 1.25663 1.09477 1.04246 0.96470 1.83116 1.65272 0.95699 1.06211 1.25272 1.11424 1.02221 0.98729 1.19543 0.95858 0.80464 0.74724 1.92993 1.92058 1.92713 1.40751 1.93117 1.79629 1.54380 1.87938 0.93384 0.94007 0.94027 0.92349 0.92353 0.91732 0.92546 0.91360 0.91100 0.77240 0.82686 0.80762 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 11.74 55.49 0.65 -25.30 16 2 C 0.02 0.59 5.44 -17.43 -0.09 0.50 16 3 Si 0.90 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -6.90 9.70 -15.06 -0.15 -7.05 16 8 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 9 N -0.58 -14.24 3.03 -162.57 -0.49 -14.73 16 10 C 0.16 3.74 5.70 -2.53 -0.01 3.73 16 11 C -0.14 -2.52 7.08 -24.59 -0.17 -2.69 16 12 C -0.13 -2.04 5.80 -24.90 -0.14 -2.19 16 13 C 0.15 2.93 3.30 -66.95 -0.22 2.71 16 14 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 15 C 0.11 2.25 5.05 -4.04 -0.02 2.23 16 16 N -0.71 -10.97 5.23 -61.46 -0.32 -11.29 16 17 C 0.56 9.21 7.63 -12.63 -0.10 9.11 16 18 O -0.52 -10.62 13.42 5.25 0.07 -10.55 16 19 C -0.11 -1.43 5.96 -104.63 -0.62 -2.05 16 20 C -0.11 -1.02 9.90 -39.02 -0.39 -1.40 16 21 C -0.22 -1.65 11.12 28.86 0.32 -1.32 16 22 S 0.23 1.96 22.40 -107.50 -2.41 -0.45 16 23 C -0.26 -3.10 6.08 -35.10 -0.21 -3.31 16 24 C 0.35 4.58 4.84 36.01 0.17 4.76 16 25 F -0.20 -2.51 16.79 2.25 0.04 -2.47 16 26 F -0.17 -2.88 14.65 2.25 0.03 -2.85 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.04 1.04 8.14 -51.92 -0.42 0.61 16 29 H 0.04 1.07 7.60 -51.93 -0.39 0.67 16 30 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.05 7.85 -51.93 -0.41 0.64 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.55 8.07 -51.93 -0.42 1.13 16 35 H 0.07 1.62 8.13 -51.93 -0.42 1.20 16 36 H 0.39 4.71 6.72 -40.82 -0.27 4.43 16 37 H 0.16 1.05 7.14 -52.49 -0.37 0.68 16 38 H 0.18 0.75 8.06 -52.49 -0.42 0.32 16 39 H 0.13 1.50 8.14 -51.93 -0.42 1.07 16 LS Contribution 344.30 15.07 5.19 5.19 Total: -1.00 -32.60 344.30 -8.70 -41.30 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -4.80 Total: 1.30 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -1.64 Total: 3.02 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.16 Total: -51.32 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.07 Total: -10.55 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.07 Total: -5.32 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.41 Total: -0.45 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.60 -8.70 -41.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028290880.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.751 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds