Wall clock time and date at job start Tue Mar 31 2020 16:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99549 * 2 1 4 4 H 1.48493 * 109.47035 * 265.15009 * 3 2 1 5 5 H 1.48498 * 109.47290 * 25.15520 * 3 2 1 6 6 H 1.48506 * 109.46798 * 145.15084 * 3 2 1 7 7 C 1.38805 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00387 * 343.02644 * 7 2 1 9 9 N 1.36940 * 120.00072 * 163.03101 * 7 2 1 10 10 C 1.47421 * 125.64556 * 331.82583 * 9 7 2 11 11 C 1.54911 * 104.92974 * 204.09094 * 10 9 7 12 12 C 1.55278 * 101.52483 * 323.12990 * 11 10 9 13 13 C 1.47025 * 125.65111 * 151.84606 * 9 7 2 14 14 H 1.09002 * 109.87975 * 59.50554 * 13 9 7 15 15 C 1.53004 * 109.88279 * 298.34333 * 13 9 7 16 16 N 1.46500 * 109.47327 * 56.72831 * 15 13 9 17 17 C 1.34772 * 119.99716 * 185.93909 * 16 15 13 18 18 O 1.21638 * 120.00342 * 359.97438 * 17 16 15 19 19 C 1.47190 * 119.99974 * 180.02562 * 17 16 15 20 20 C 1.44429 * 123.45960 * 359.70559 * 19 17 16 21 21 C 1.32770 * 113.08324 * 179.80759 * 20 19 17 22 22 S 1.75508 * 110.57397 * 0.44368 * 21 20 19 23 23 C 1.36005 * 123.46413 * 179.97438 * 19 17 16 24 24 C 1.50704 * 124.58798 * 0.02562 * 23 19 17 25 25 F 1.39893 * 109.47425 * 299.99919 * 24 23 19 26 26 F 1.39901 * 109.47294 * 60.00283 * 24 23 19 27 27 H 0.96998 * 120.00460 * 0.02562 * 1 2 3 28 28 H 1.08993 * 110.36820 * 322.98819 * 10 9 7 29 29 H 1.09005 * 110.37106 * 85.20126 * 10 9 7 30 30 H 1.09004 * 111.00008 * 81.11710 * 11 10 9 31 31 H 1.08994 * 111.00790 * 204.97292 * 11 10 9 32 32 H 1.09001 * 110.62003 * 276.99853 * 12 11 10 33 33 H 1.09007 * 110.75406 * 153.77427 * 12 11 10 34 34 H 1.09001 * 109.46602 * 176.72910 * 15 13 9 35 35 H 1.09000 * 109.46933 * 296.72440 * 15 13 9 36 36 H 0.96995 * 119.99722 * 5.94291 * 16 15 13 37 37 H 1.07998 * 123.45769 * 359.97438 * 20 19 17 38 38 H 1.07996 * 124.71181 * 180.17724 * 21 20 19 39 39 H 1.09003 * 109.46812 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6000 1.9873 -1.3950 5 1 1.4000 2.6801 0.5951 6 1 3.4927 1.4720 0.8001 7 6 2.0103 -1.2021 0.0005 8 1 1.5056 -2.1170 0.2740 9 7 3.3349 -1.2280 -0.3456 10 6 4.0031 -0.2826 -1.2583 11 6 5.2358 -1.0511 -1.7965 12 6 5.6706 -1.8573 -0.5427 13 6 4.3262 -2.2036 0.1312 14 1 4.0195 -3.2111 -0.1497 15 6 4.4652 -2.1037 1.6516 16 7 3.1554 -2.3058 2.2760 17 6 3.0107 -2.1429 3.6060 18 8 3.9676 -1.8286 4.2880 19 6 1.6949 -2.3466 4.2335 20 6 0.5093 -2.7151 3.4957 21 6 -0.5632 -2.8485 4.2669 22 16 -0.1637 -2.5127 5.9425 23 6 1.4695 -2.2019 5.5670 24 6 2.5212 -1.8173 6.5756 25 9 3.5450 -2.7706 6.5684 26 9 3.0483 -0.5643 6.2450 27 1 -0.4851 0.8400 -0.0004 28 1 3.3375 -0.0117 -2.0777 29 1 4.3190 0.6089 -0.7164 30 1 4.9548 -1.7187 -2.6111 31 1 6.0193 -0.3618 -2.1110 32 1 6.2847 -1.2422 0.1152 33 1 6.2021 -2.7641 -0.8316 34 1 5.1577 -2.8681 2.0041 35 1 4.8463 -1.1177 1.9176 36 1 2.3925 -2.5569 1.7322 37 1 0.4970 -2.8692 2.4269 38 1 -1.5460 -3.1212 3.9117 39 1 2.0732 -1.7722 7.5683 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028291077.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:05 Heat of formation + Delta-G solvation = -73.541159 kcal Electronic energy + Delta-G solvation = -27155.166565 eV Core-core repulsion = 23054.096057 eV Total energy + Delta-G solvation = -4101.070509 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.095 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -48.56638 -46.57593 -39.47300 -38.03519 -36.56793 -33.90761 -32.73427 -30.88740 -30.04647 -29.58532 -26.73151 -24.97290 -23.96934 -22.76320 -21.44674 -20.76756 -19.67978 -18.87748 -18.29681 -17.31892 -16.86482 -16.65284 -16.11392 -15.60594 -15.43359 -15.15389 -14.79962 -14.51785 -14.05452 -13.50383 -13.40207 -13.13503 -13.05835 -12.91409 -12.91269 -12.59417 -12.46909 -12.32243 -12.10322 -11.70752 -11.30390 -11.18318 -11.15128 -10.97503 -10.95276 -10.67585 -10.54127 -10.11343 -10.00965 -9.55619 -9.36842 -9.03733 -8.78701 -8.45942 -8.17270 -7.06373 -6.09864 -3.47314 0.68744 1.41546 1.83709 2.22855 3.29423 3.44161 3.49458 3.73899 3.84643 3.97050 4.24609 4.45529 4.86683 4.90563 4.98660 5.13970 5.22615 5.25230 5.36945 5.43504 5.51646 5.55508 5.80450 5.90161 5.96364 6.10020 6.12364 6.15232 6.23654 6.31691 6.35312 6.38789 6.61633 6.74819 6.83234 7.14944 7.65132 8.12752 8.24829 8.65052 8.85439 9.54466 10.09624 11.04906 Molecular weight = 330.10amu Principal moments of inertia in cm(-1) A = 0.013785 B = 0.004937 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.729335 B = 5670.526656 C = 6542.680216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.036 3.964 3 Si 0.888 3.112 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.273 1.273 7 C -0.247 4.247 8 H 0.085 0.915 9 N -0.602 5.602 10 C 0.111 3.889 11 C -0.130 4.130 12 C -0.123 4.123 13 C 0.144 3.856 14 H 0.049 0.951 15 C 0.116 3.884 16 N -0.690 5.690 17 C 0.560 3.440 18 O -0.540 6.540 19 C -0.092 4.092 20 C -0.097 4.097 21 C -0.211 4.211 22 S 0.194 5.806 23 C -0.270 4.270 24 C 0.361 3.639 25 F -0.185 7.185 26 F -0.183 7.183 27 H 0.265 0.735 28 H 0.056 0.944 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.412 0.588 37 H 0.163 0.837 38 H 0.175 0.825 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.600 -6.894 8.181 10.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.165 4.165 3 Si 0.718 3.282 4 H -0.212 1.212 5 H -0.231 1.231 6 H -0.198 1.198 7 C -0.374 4.374 8 H 0.102 0.898 9 N -0.328 5.328 10 C -0.014 4.014 11 C -0.169 4.169 12 C -0.162 4.162 13 C 0.037 3.963 14 H 0.067 0.933 15 C -0.010 4.010 16 N -0.344 5.344 17 C 0.344 3.656 18 O -0.419 6.419 19 C -0.111 4.111 20 C -0.126 4.126 21 C -0.346 4.346 22 S 0.460 5.540 23 C -0.390 4.390 24 C 0.305 3.695 25 F -0.166 7.166 26 F -0.164 7.164 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.254 0.746 37 H 0.180 0.820 38 H 0.193 0.807 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.194 -6.570 9.972 12.001 hybrid contribution 0.841 1.114 -1.730 2.223 sum 2.035 -5.456 8.242 10.092 Atomic orbital electron populations 1.69754 1.05508 1.26900 1.52317 1.25150 0.95163 0.97624 0.98528 0.86857 0.79397 0.84167 0.77752 1.21236 1.23125 1.19842 1.18280 0.81782 0.93761 1.43582 0.89787 1.44803 1.05423 1.32802 1.49775 1.21960 0.93185 0.92981 0.93252 1.22731 0.97958 0.99011 0.97195 1.22546 0.96399 0.99990 0.97245 1.21350 0.89774 0.94691 0.90498 0.93291 1.21915 0.84134 1.00695 0.94255 1.46006 1.13516 1.68194 1.06658 1.17545 0.86792 0.78365 0.82873 1.90799 1.40099 1.48047 1.62969 1.20483 0.95851 1.02840 0.91935 1.21474 0.90161 0.99270 1.01667 1.25523 1.03708 1.09663 0.95669 1.82598 0.97607 1.65282 1.08477 1.25028 1.01959 1.12991 0.99063 1.19291 0.81376 0.73552 0.95259 1.93033 1.61770 1.64363 1.97452 1.93062 1.87699 1.41304 1.94324 0.92546 0.92544 0.95821 0.91276 0.91725 0.91366 0.91295 0.92844 0.91947 0.74618 0.81961 0.80742 0.87348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.63 13.97 55.49 0.78 -24.85 16 2 C 0.04 0.98 5.46 -17.43 -0.10 0.89 16 3 Si 0.89 22.58 24.36 -169.99 -4.14 18.44 16 4 H -0.29 -7.01 6.85 56.52 0.39 -6.62 16 5 H -0.30 -7.95 7.11 56.52 0.40 -7.54 16 6 H -0.27 -7.11 6.64 56.52 0.38 -6.74 16 7 C -0.25 -6.20 8.45 -15.06 -0.13 -6.33 16 8 H 0.08 2.15 6.73 -52.48 -0.35 1.79 16 9 N -0.60 -13.32 2.82 -162.57 -0.46 -13.78 16 10 C 0.11 2.30 4.78 -2.53 -0.01 2.29 16 11 C -0.13 -2.06 7.10 -24.52 -0.17 -2.24 16 12 C -0.12 -1.87 6.48 -24.83 -0.16 -2.03 16 13 C 0.14 2.64 3.42 -66.95 -0.23 2.41 16 14 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 15 C 0.12 2.22 5.27 -4.04 -0.02 2.20 16 16 N -0.69 -13.90 4.80 -61.46 -0.30 -14.19 16 17 C 0.56 11.75 7.75 -12.63 -0.10 11.65 16 18 O -0.54 -12.49 12.75 5.24 0.07 -12.43 16 19 C -0.09 -1.68 5.98 -104.63 -0.63 -2.30 16 20 C -0.10 -1.58 9.91 -39.02 -0.39 -1.97 16 21 C -0.21 -2.78 11.12 28.86 0.32 -2.46 16 22 S 0.19 2.30 22.95 -107.50 -2.47 -0.17 16 23 C -0.27 -4.31 5.78 -35.11 -0.20 -4.51 16 24 C 0.36 5.63 5.03 36.01 0.18 5.81 16 25 F -0.19 -3.26 15.71 2.25 0.04 -3.23 16 26 F -0.18 -3.47 15.71 2.25 0.04 -3.44 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.06 1.23 7.41 -51.93 -0.38 0.85 16 29 H 0.02 0.53 5.24 -51.93 -0.27 0.26 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.01 7.80 -51.93 -0.40 0.61 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.34 8.05 -51.93 -0.42 0.92 16 36 H 0.41 8.25 4.07 -40.82 -0.17 8.08 16 37 H 0.16 2.71 7.10 -52.49 -0.37 2.34 16 38 H 0.18 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.11 1.15 8.12 -51.93 -0.42 0.73 16 LS Contribution 331.79 15.07 5.00 5.00 Total: -1.00 -32.11 331.79 -7.59 -39.70 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.51 Total: 5.53 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -1.63 Total: 3.41 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.02 Total: -52.82 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.07 Total: -12.43 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 0.07 Total: -6.66 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.14 Total: 18.44 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.47 Total: -0.17 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.11 -7.59 -39.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028291077.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.846 kcal (2) G-P(sol) polarization free energy of solvation -32.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds