Wall clock time and date at job start Tue Mar 31 2020 16:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 119.99783 * 2 1 4 4 H 1.48496 * 109.47215 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47284 * 300.00226 * 3 2 1 6 6 H 1.48507 * 109.47378 * 59.99986 * 3 2 1 7 7 C 1.38809 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00203 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99921 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.64791 * 13.63148 * 9 7 2 11 11 C 1.54914 * 104.82856 * 155.91305 * 10 9 7 12 12 C 1.55152 * 101.58223 * 37.01043 * 11 10 9 13 13 C 1.47022 * 125.64724 * 193.68000 * 9 7 2 14 14 H 1.09007 * 110.00882 * 300.51136 * 13 9 7 15 15 C 1.52996 * 109.88224 * 61.60086 * 13 9 7 16 16 N 1.46501 * 109.47237 * 183.24922 * 15 13 9 17 17 C 1.34773 * 120.00235 * 185.09729 * 16 15 13 18 18 O 1.21697 * 120.00244 * 359.97438 * 17 16 15 19 19 C 1.46588 * 120.00254 * 179.97438 * 17 16 15 20 20 S 1.75834 * 125.45382 * 2.35248 * 19 17 16 21 21 C 1.70619 * 91.56117 * 179.97438 * 20 19 17 22 22 C 1.33817 * 110.95400 * 0.31202 * 21 20 19 23 23 C 1.36638 * 125.46118 * 182.66620 * 19 17 16 24 24 C 1.50704 * 123.35100 * 359.97438 * 23 19 17 25 25 F 1.39896 * 109.47392 * 298.30869 * 24 23 19 26 26 F 1.39901 * 109.46581 * 58.31135 * 24 23 19 27 27 H 0.97005 * 120.00553 * 359.97438 * 1 2 3 28 28 H 1.09000 * 110.36930 * 274.74564 * 10 9 7 29 29 H 1.08996 * 110.36876 * 37.07160 * 10 9 7 30 30 H 1.08999 * 111.00287 * 278.93000 * 11 10 9 31 31 H 1.09000 * 111.00103 * 155.08064 * 11 10 9 32 32 H 1.09002 * 110.71772 * 206.13540 * 12 11 10 33 33 H 1.08996 * 110.72348 * 82.86242 * 12 11 10 34 34 H 1.09000 * 109.47271 * 303.24708 * 15 13 9 35 35 H 1.09004 * 109.47381 * 63.24641 * 15 13 9 36 36 H 0.97002 * 119.99803 * 5.09184 * 16 15 13 37 37 H 1.07997 * 124.52206 * 180.02562 * 21 20 19 38 38 H 1.08000 * 122.44486 * 179.74480 * 22 21 20 39 39 H 1.09001 * 109.46800 * 178.30764 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1122 -2.5501 -0.2823 11 6 -0.2588 -4.0151 -0.7642 12 6 0.7663 -4.7454 0.1429 13 6 1.9023 -3.7105 0.2836 14 1 2.6960 -3.9317 -0.4301 15 6 2.4604 -3.7407 1.7079 16 7 3.1013 -5.0349 1.9539 17 6 3.5759 -5.3295 3.1804 18 8 3.4725 -4.5203 4.0835 19 6 4.2167 -6.6247 3.4267 20 16 4.4939 -7.8717 2.2185 21 6 5.2257 -8.8930 3.3728 22 6 5.2424 -8.3160 4.5800 23 6 4.6888 -7.0588 4.6332 24 6 4.6098 -6.2411 5.8967 25 9 5.3414 -5.0598 5.7342 26 9 3.2732 -5.9286 6.1670 27 1 -0.4851 0.8400 0.0004 28 1 -0.6975 -2.3881 0.6228 29 1 -0.4248 -1.8599 -1.0658 30 1 0.0127 -4.1095 -1.8156 31 1 -1.2690 -4.3848 -0.5884 32 1 1.1293 -5.6534 -0.3388 33 1 0.3285 -4.9720 1.1150 34 1 3.1939 -2.9434 1.8277 35 1 1.6476 -3.5965 2.4197 36 1 3.1839 -5.6798 1.2340 37 1 5.6185 -9.8760 3.1587 38 1 5.6603 -8.8025 5.4490 39 1 5.0241 -6.8138 6.7265 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028291925.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:56 Heat of formation + Delta-G solvation = -98.724358 kcal Electronic energy + Delta-G solvation = -26109.563214 eV Core-core repulsion = 22007.400680 eV Total energy + Delta-G solvation = -4102.162534 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.095 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.78549 -47.82694 -40.97311 -39.45371 -38.65294 -35.84643 -34.44031 -31.85387 -31.30715 -30.41753 -28.58423 -26.72936 -25.64737 -24.28961 -22.53226 -21.94997 -21.34676 -20.30896 -19.86495 -18.69400 -18.21283 -18.07202 -17.52917 -17.01957 -16.74513 -16.53395 -16.42160 -15.77592 -15.63896 -15.31393 -14.94748 -14.64011 -14.58790 -14.19097 -14.04554 -13.85845 -13.69285 -13.58417 -13.42649 -13.31810 -13.03063 -12.88277 -12.71239 -12.42394 -12.00324 -11.91827 -11.79439 -11.73497 -11.50704 -11.43105 -11.21997 -10.71279 -10.29539 -9.96734 -9.66246 -8.89573 -7.90352 -5.28171 -0.71340 0.28942 0.81836 1.22112 1.42013 1.44878 1.53860 1.97531 2.00804 2.47514 2.92538 3.29041 3.34031 3.55191 3.71572 3.85876 3.94343 3.97458 4.12085 4.20758 4.23779 4.35286 4.40672 4.51550 4.69008 4.80590 4.91395 4.96372 5.08179 5.10741 5.13554 5.15590 5.27206 5.44838 5.51703 5.65140 5.76619 6.20710 6.38848 7.06265 7.08201 7.73640 8.38986 9.20371 Molecular weight = 330.10amu Principal moments of inertia in cm(-1) A = 0.015430 B = 0.003406 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.244297 B = 8219.978112 C = 9214.129935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.059 4.059 3 Si 0.971 3.029 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.296 1.296 7 C -0.240 4.240 8 H 0.077 0.923 9 N -0.610 5.610 10 C 0.172 3.828 11 C -0.132 4.132 12 C -0.115 4.115 13 C 0.148 3.852 14 H 0.055 0.945 15 C 0.131 3.869 16 N -0.703 5.703 17 C 0.567 3.433 18 O -0.558 6.558 19 C -0.272 4.272 20 S 0.287 5.713 21 C -0.216 4.216 22 C -0.131 4.131 23 C -0.126 4.126 24 C 0.320 3.680 25 F -0.214 7.214 26 F -0.214 7.214 27 H 0.248 0.752 28 H -0.011 1.011 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.037 0.963 36 H 0.410 0.590 37 H 0.216 0.784 38 H 0.187 0.813 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.074 -26.274 4.966 28.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.252 4.252 3 Si 0.800 3.200 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.223 1.223 7 C -0.370 4.370 8 H 0.094 0.906 9 N -0.335 5.335 10 C 0.047 3.953 11 C -0.170 4.170 12 C -0.152 4.152 13 C 0.041 3.959 14 H 0.072 0.928 15 C 0.005 3.995 16 N -0.355 5.355 17 C 0.353 3.647 18 O -0.438 6.438 19 C -0.393 4.393 20 S 0.557 5.443 21 C -0.354 4.354 22 C -0.160 4.160 23 C -0.144 4.144 24 C 0.265 3.735 25 F -0.196 7.196 26 F -0.195 7.195 27 H 0.057 0.943 28 H 0.007 0.993 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.125 0.875 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.246 0.754 37 H 0.233 0.767 38 H 0.204 0.796 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 10.625 -25.578 3.970 27.980 hybrid contribution 0.333 1.788 1.540 2.383 sum 10.959 -23.790 5.510 26.766 Atomic orbital electron populations 1.70146 1.06263 1.25334 1.57552 1.25663 0.96522 1.00961 1.02095 0.85118 0.78289 0.79839 0.76766 1.19225 1.21255 1.22321 1.19344 0.90763 0.83612 1.43241 0.90557 1.44770 1.06366 1.01883 1.80463 1.21303 0.83863 0.93721 0.96378 1.22869 0.99513 0.95141 0.99487 1.22620 0.95146 0.97442 1.00026 1.21346 0.96093 0.86898 0.91575 0.92774 1.21756 0.95414 0.83256 0.99047 1.45672 1.59701 1.19090 1.11083 1.17549 0.78345 0.85897 0.82914 1.90893 1.58080 1.50313 1.44484 1.24640 1.13024 1.00832 1.00850 1.82910 1.50237 1.02526 1.08668 1.25828 1.05802 1.06945 0.96784 1.19915 1.02838 0.92271 1.00930 1.20359 1.02221 0.97749 0.94089 1.20652 0.74541 0.81539 0.96788 1.92987 1.77252 1.52326 1.96993 1.92988 1.37716 1.94079 1.94751 0.94283 0.99277 0.94162 0.90794 0.89855 0.87470 0.91931 0.94646 0.94412 0.75368 0.76712 0.79554 0.81469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.90 10.54 21.65 0.23 -57.67 16 2 C -0.06 -3.42 5.47 84.86 0.46 -2.95 16 3 Si 0.97 47.38 29.55 68.60 2.03 49.40 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 6 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 7 C -0.24 -13.68 9.75 84.03 0.82 -12.86 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.61 -31.24 3.13 -668.26 -2.09 -33.33 16 10 C 0.17 8.50 5.43 86.86 0.47 8.97 16 11 C -0.13 -4.57 7.08 31.99 0.23 -4.34 16 12 C -0.11 -3.54 6.14 31.78 0.20 -3.34 16 13 C 0.15 5.82 3.21 45.34 0.15 5.96 16 14 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 15 C 0.13 5.39 5.08 86.38 0.44 5.83 16 16 N -0.70 -22.29 5.33 -467.18 -2.49 -24.79 16 17 C 0.57 19.73 7.73 86.42 0.67 20.40 16 18 O -0.56 -24.97 13.03 -4.34 -0.06 -25.02 16 19 C -0.27 -6.80 6.43 24.08 0.15 -6.65 16 20 S 0.29 3.83 22.16 -56.49 -1.25 2.58 16 21 C -0.22 -1.83 10.92 66.81 0.73 -1.10 16 22 C -0.13 -1.51 9.92 21.08 0.21 -1.30 16 23 C -0.13 -2.71 5.36 -20.42 -0.11 -2.82 16 24 C 0.32 7.85 4.98 71.24 0.35 8.20 16 25 F -0.21 -7.05 15.86 44.97 0.71 -6.34 16 26 F -0.21 -7.03 15.70 44.97 0.71 -6.32 16 27 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 28 H -0.01 -0.60 8.08 -2.39 -0.02 -0.62 16 29 H 0.04 2.23 6.86 -2.39 -0.02 2.21 16 30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.06 1.98 7.80 -2.39 -0.02 1.96 16 34 H 0.04 1.68 7.90 -2.39 -0.02 1.66 16 35 H 0.04 1.77 8.06 -2.38 -0.02 1.75 16 36 H 0.41 9.66 7.48 -92.71 -0.69 8.97 16 37 H 0.22 0.10 8.06 -2.91 -0.02 0.08 16 38 H 0.19 0.74 8.06 -2.91 -0.02 0.72 16 39 H 0.17 2.07 8.05 -2.39 -0.02 2.06 16 Total: -1.00 -82.92 343.16 2.95 -79.97 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 0.40 Total: 7.51 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 4.77 Total: 14.00 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -4.35 Total: -115.79 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.06 Total: -25.02 kcal Atomic # 9 Polarization: -14.08 SS G_CDS: 1.42 Total: -12.66 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.40 kcal Atomic # 16 Polarization: 3.83 SS G_CDS: -1.25 Total: 2.58 kcal Total: -82.92 2.95 -79.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028291925.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.755 kcal (2) G-P(sol) polarization free energy of solvation -82.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds