Wall clock time and date at job start Tue Mar 31 2020 16:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00068 * 2 1 4 4 H 1.48505 * 109.47074 * 267.13416 * 3 2 1 5 5 H 1.48506 * 109.47017 * 27.13404 * 3 2 1 6 6 H 1.48500 * 109.46994 * 147.13504 * 3 2 1 7 7 C 1.38812 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99620 * 340.09970 * 7 2 1 9 9 N 1.36936 * 120.00235 * 160.10583 * 7 2 1 10 10 C 1.47418 * 125.64707 * 336.02026 * 9 7 2 11 11 C 1.54910 * 104.83471 * 204.14482 * 10 9 7 12 12 C 1.55158 * 101.57980 * 322.99532 * 11 10 9 13 13 C 1.47023 * 125.64970 * 156.04170 * 9 7 2 14 14 H 1.09000 * 110.00629 * 59.43306 * 13 9 7 15 15 C 1.53006 * 109.88338 * 298.34113 * 13 9 7 16 16 N 1.46495 * 109.47070 * 62.31007 * 15 13 9 17 17 C 1.34781 * 119.99900 * 185.14247 * 16 15 13 18 18 O 1.21699 * 119.99604 * 359.97438 * 17 16 15 19 19 C 1.46580 * 119.99848 * 179.97438 * 17 16 15 20 20 S 1.75827 * 125.46216 * 4.09450 * 19 17 16 21 21 C 1.70615 * 91.56419 * 179.91239 * 20 19 17 22 22 C 1.33816 * 110.95149 * 0.35533 * 21 20 19 23 23 C 1.36649 * 125.45436 * 184.39827 * 19 17 16 24 24 C 1.50705 * 123.35311 * 359.97438 * 23 19 17 25 25 F 1.39895 * 109.47016 * 188.49387 * 24 23 19 26 26 F 1.39897 * 109.47034 * 308.49662 * 24 23 19 27 27 H 0.97001 * 120.00179 * 359.97438 * 1 2 3 28 28 H 1.09009 * 110.37066 * 85.31275 * 10 9 7 29 29 H 1.09001 * 110.46290 * 323.03538 * 10 9 7 30 30 H 1.08995 * 111.01236 * 204.91429 * 11 10 9 31 31 H 1.09010 * 110.99838 * 81.06376 * 11 10 9 32 32 H 1.08997 * 110.71854 * 277.12648 * 12 11 10 33 33 H 1.09003 * 110.71487 * 153.86019 * 12 11 10 34 34 H 1.08999 * 109.46448 * 302.30534 * 15 13 9 35 35 H 1.09000 * 109.46601 * 182.31010 * 15 13 9 36 36 H 0.96997 * 120.00327 * 5.13918 * 16 15 13 37 37 H 1.07997 * 124.52416 * 180.02562 * 21 20 19 38 38 H 1.08005 * 122.44893 * 179.74157 * 22 21 20 39 39 H 1.08999 * 109.47057 * 68.49361 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5583 2.0114 -1.3984 5 1 1.4186 2.6694 0.6386 6 1 3.5161 1.4584 0.7598 7 6 2.0102 -1.2021 -0.0005 8 1 1.5185 -2.1096 0.3174 9 7 3.3183 -1.2374 -0.4041 10 6 3.9672 -0.2638 -1.3009 11 6 5.1582 -1.0326 -1.9256 12 6 5.6298 -1.9014 -0.7297 13 6 4.3080 -2.2526 -0.0151 14 1 3.9699 -3.2412 -0.3258 15 6 4.5129 -2.2256 1.5009 16 7 3.2540 -2.5630 2.1699 17 6 3.1670 -2.5005 3.5134 18 8 4.1344 -2.1643 4.1708 19 6 1.9072 -2.8375 4.1828 20 16 0.4578 -3.4358 3.3874 21 6 -0.3779 -3.5221 4.8723 22 6 0.3990 -3.1154 5.8830 23 6 1.6693 -2.7315 5.5242 24 6 2.6973 -2.2428 6.5120 25 9 2.2201 -2.4317 7.8134 26 9 3.8856 -2.9613 6.3421 27 1 -0.4850 0.8400 0.0004 28 1 4.3260 0.5947 -0.7330 29 1 3.2745 0.0591 -2.0781 30 1 5.9430 -0.3461 -2.2434 31 1 4.8278 -1.6570 -2.7558 32 1 6.2838 -1.3292 -0.0717 33 1 6.1294 -2.8038 -1.0821 34 1 4.8313 -1.2291 1.8067 35 1 5.2772 -2.9520 1.7772 36 1 2.4830 -2.8313 1.6460 37 1 -1.3995 -3.8551 4.9813 38 1 0.0535 -3.0909 6.9060 39 1 2.8867 -1.1826 6.3447 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028291927.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:00 Heat of formation + Delta-G solvation = -73.809276 kcal Electronic energy + Delta-G solvation = -26781.300043 eV Core-core repulsion = 22680.217908 eV Total energy + Delta-G solvation = -4101.082135 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.095 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -48.70027 -46.65687 -39.49938 -38.19802 -37.33657 -34.04810 -32.74346 -30.61395 -30.07014 -29.46807 -27.17544 -24.97401 -23.94941 -23.32721 -21.42106 -20.55362 -19.86556 -18.95344 -18.34358 -17.25772 -17.03813 -16.78160 -16.20022 -15.82940 -15.44041 -15.17289 -14.83128 -14.65074 -14.18494 -13.54688 -13.46997 -13.34319 -13.22937 -13.02409 -12.99123 -12.64160 -12.48408 -12.46138 -12.27730 -11.76809 -11.37393 -11.26611 -11.22104 -11.01384 -10.80243 -10.61248 -10.57971 -10.12720 -10.03199 -9.65109 -9.50342 -8.91223 -8.81118 -8.55005 -8.41072 -7.14243 -6.09258 -3.43676 0.51926 1.50452 1.93536 2.30355 3.27007 3.41440 3.43431 3.45064 3.63226 3.99525 4.43765 4.46783 4.73996 4.82992 5.09664 5.15403 5.18622 5.19238 5.25705 5.32819 5.40755 5.50551 5.75529 5.84448 5.86191 6.03302 6.05233 6.14758 6.16567 6.19537 6.26366 6.33229 6.58164 6.71416 6.76281 6.93302 7.58193 7.96741 8.14410 8.56724 8.66940 9.54125 10.06453 11.05538 Molecular weight = 330.10amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.004658 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.875109 B = 6009.174123 C = 6788.088576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.032 3.968 3 Si 0.883 3.117 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.274 1.274 7 C -0.245 4.245 8 H 0.086 0.914 9 N -0.602 5.602 10 C 0.110 3.890 11 C -0.131 4.131 12 C -0.123 4.123 13 C 0.144 3.856 14 H 0.050 0.950 15 C 0.115 3.885 16 N -0.694 5.694 17 C 0.577 3.423 18 O -0.534 6.534 19 C -0.225 4.225 20 S 0.279 5.721 21 C -0.248 4.248 22 C -0.129 4.129 23 C -0.126 4.126 24 C 0.339 3.661 25 F -0.207 7.207 26 F -0.179 7.179 27 H 0.264 0.736 28 H 0.026 0.974 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.407 0.593 37 H 0.172 0.828 38 H 0.148 0.852 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.171 -6.978 5.640 9.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.168 4.168 3 Si 0.714 3.286 4 H -0.213 1.213 5 H -0.231 1.231 6 H -0.199 1.199 7 C -0.373 4.373 8 H 0.104 0.896 9 N -0.328 5.328 10 C -0.015 4.015 11 C -0.169 4.169 12 C -0.161 4.161 13 C 0.037 3.963 14 H 0.068 0.932 15 C -0.010 4.010 16 N -0.346 5.346 17 C 0.361 3.639 18 O -0.414 6.414 19 C -0.347 4.347 20 S 0.549 5.451 21 C -0.387 4.387 22 C -0.159 4.159 23 C -0.143 4.143 24 C 0.283 3.717 25 F -0.189 7.189 26 F -0.160 7.160 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.247 0.753 37 H 0.190 0.810 38 H 0.166 0.834 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.185 -7.019 4.581 8.967 hybrid contribution 0.142 1.302 1.461 1.963 sum 3.328 -5.717 6.043 8.960 Atomic orbital electron populations 1.69788 1.05472 1.26788 1.52299 1.25061 0.95140 0.97452 0.99124 0.86945 0.79413 0.84543 0.77741 1.21257 1.23099 1.19932 1.18343 0.83051 0.94295 1.41569 0.89620 1.44855 1.07242 1.28384 1.52289 1.21961 0.93632 0.92750 0.93115 1.22718 0.98040 0.98758 0.97385 1.22511 0.96405 0.99843 0.97359 1.21343 0.89933 0.94370 0.90688 0.93220 1.22001 0.84676 1.00349 0.94013 1.45939 1.16122 1.67213 1.05325 1.16903 0.85738 0.78540 0.82701 1.90829 1.37038 1.48532 1.64975 1.24712 1.00343 1.12572 0.97060 1.83591 1.00033 1.55407 1.06085 1.25328 1.05865 1.09284 0.98175 1.19613 0.92238 1.02839 1.01201 1.19872 0.96569 1.04734 0.93147 1.19728 0.78837 0.96787 0.76328 1.92942 1.88736 1.96893 1.40294 1.93062 1.47303 1.80624 1.95037 0.92583 0.95691 0.92411 0.91685 0.91220 0.91303 0.91222 0.91549 0.92470 0.75340 0.81031 0.83391 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.49 13.97 55.49 0.78 -24.71 16 2 C 0.03 0.87 5.45 -17.43 -0.10 0.78 16 3 Si 0.88 21.89 24.34 -169.99 -4.14 17.76 16 4 H -0.29 -6.87 6.81 56.52 0.38 -6.48 16 5 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 6 H -0.27 -6.84 6.55 56.52 0.37 -6.47 16 7 C -0.25 -6.11 8.89 -15.06 -0.13 -6.24 16 8 H 0.09 2.18 6.54 -52.49 -0.34 1.83 16 9 N -0.60 -13.02 2.87 -162.57 -0.47 -13.49 16 10 C 0.11 2.22 4.76 -2.53 -0.01 2.21 16 11 C -0.13 -1.99 7.09 -24.58 -0.17 -2.17 16 12 C -0.12 -1.77 6.48 -24.90 -0.16 -1.93 16 13 C 0.14 2.53 3.34 -66.95 -0.22 2.31 16 14 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 15 C 0.12 2.08 5.17 -4.04 -0.02 2.06 16 16 N -0.69 -13.12 4.82 -61.65 -0.30 -13.42 16 17 C 0.58 11.18 7.74 -12.89 -0.10 11.08 16 18 O -0.53 -11.31 13.54 5.19 0.07 -11.24 16 19 C -0.22 -3.86 6.41 -36.79 -0.24 -4.10 16 20 S 0.28 4.09 22.17 -107.50 -2.38 1.71 16 21 C -0.25 -3.10 10.92 29.18 0.32 -2.78 16 22 C -0.13 -1.72 9.55 -41.41 -0.40 -2.12 16 23 C -0.13 -1.99 5.66 -105.48 -0.60 -2.59 16 24 C 0.34 5.26 4.87 36.01 0.18 5.43 16 25 F -0.21 -2.99 16.46 2.25 0.04 -2.95 16 26 F -0.18 -3.22 14.79 2.25 0.03 -3.19 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.03 0.54 5.33 -51.92 -0.28 0.27 16 29 H 0.06 1.24 7.17 -51.93 -0.37 0.87 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 32 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.34 8.13 -51.93 -0.42 0.91 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.41 7.71 5.05 -40.82 -0.21 7.50 16 37 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.15 1.67 7.63 -52.48 -0.40 1.27 16 39 H 0.12 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 332.68 15.07 5.01 5.01 Total: -1.00 -30.34 332.68 -7.58 -37.92 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -4.57 Total: 4.67 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -1.65 Total: 1.95 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 0.01 Total: -51.62 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.07 Total: -11.24 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 0.07 Total: -6.14 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.14 Total: 17.76 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -2.38 Total: 1.71 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.34 -7.58 -37.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028291927.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.891 kcal (2) G-P(sol) polarization free energy of solvation -30.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds