Wall clock time and date at job start Tue Mar 31 2020 15:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.47119 * 2 1 4 4 C 1.34223 * 117.00068 * 180.02562 * 3 2 1 5 5 O 1.20828 * 120.00189 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00166 * 179.97438 * 4 3 2 7 7 N 1.46902 * 109.47143 * 175.03385 * 6 4 3 8 8 C 1.46897 * 110.99890 * 160.97483 * 7 6 4 9 9 C 1.50705 * 109.47220 * 287.53912 * 8 7 6 10 10 H 1.07999 * 119.99464 * 358.73159 * 9 8 7 11 11 C 1.37875 * 119.99848 * 178.73205 * 9 8 7 12 12 N 1.31515 * 119.99714 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 120.00311 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47476 * 89.99716 * 13 11 9 15 15 H 1.48507 * 109.47382 * 210.00114 * 13 11 9 16 16 H 1.48501 * 109.47153 * 329.99743 * 13 11 9 17 17 C 1.46898 * 111.00420 * 284.92813 * 7 6 4 18 18 C 1.50695 * 109.47364 * 170.00033 * 17 7 6 19 19 C 1.38187 * 120.39097 * 90.00317 * 18 17 7 20 20 N 1.31874 * 120.83388 * 180.02562 * 19 18 17 21 21 C 1.31961 * 121.73313 * 359.97438 * 20 19 18 22 22 Cl 1.73601 * 119.64971 * 179.97438 * 21 20 19 23 23 C 1.38586 * 120.69483 * 359.97438 * 21 20 19 24 24 F 1.35094 * 120.44503 * 180.02562 * 23 21 20 25 25 C 1.38646 * 120.39123 * 270.02297 * 18 17 7 26 26 H 1.09001 * 109.47544 * 59.99908 * 1 2 3 27 27 H 1.09003 * 109.47196 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47111 * 299.99581 * 1 2 3 29 29 H 1.09000 * 109.47111 * 240.00419 * 2 1 3 30 30 H 1.09001 * 109.47215 * 120.00526 * 2 1 3 31 31 H 1.09003 * 109.46660 * 55.04095 * 6 4 3 32 32 H 1.08996 * 109.47182 * 295.03502 * 6 4 3 33 33 H 1.09004 * 109.47275 * 47.53451 * 8 7 6 34 34 H 1.09005 * 109.47541 * 167.53930 * 8 7 6 35 35 H 0.97000 * 120.00351 * 180.02562 * 12 11 9 36 36 H 1.09006 * 109.47009 * 49.99662 * 17 7 6 37 37 H 1.08999 * 109.47407 * 290.00573 * 17 7 6 38 38 H 1.07998 * 119.58287 * 359.74264 * 19 18 17 39 39 H 1.08006 * 120.78965 * 359.95369 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9374 -0.0012 7 7 5.3829 2.8625 0.1182 8 6 6.0119 4.1149 -0.3222 9 6 5.9192 4.2231 -1.8225 10 1 5.4591 3.4302 -2.3936 11 6 6.4216 5.3342 -2.4659 12 7 6.3403 5.4288 -3.7751 13 14 7.2180 6.7051 -1.4781 14 1 8.6717 6.4352 -1.3392 15 1 7.0195 7.9996 -2.1783 16 1 6.5958 6.7705 -0.1312 17 6 5.7826 2.5273 1.4915 18 6 7.2573 2.2188 1.5244 19 6 8.1771 3.2248 1.7516 20 7 9.4696 2.9647 1.7817 21 6 9.9364 1.7442 1.5984 22 17 11.6488 1.4631 1.6485 23 6 9.0741 0.6844 1.3663 24 9 9.5575 -0.5633 1.1798 25 6 7.7073 0.9224 1.3266 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.5157 3.4984 0.8411 32 1 3.6574 3.4391 -0.9323 33 1 5.4978 4.9602 0.1354 34 1 7.0596 4.1207 -0.0216 35 1 6.6941 6.2103 -4.2278 36 1 5.2215 1.6566 1.8309 37 1 5.5735 3.3724 2.1474 38 1 7.8333 4.2375 1.9019 39 1 7.0107 0.1167 1.1473 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237408239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:24 Heat of formation + Delta-G solvation = -88.726531 kcal Electronic energy + Delta-G solvation = -25924.172361 eV Core-core repulsion = 21808.026869 eV Total energy + Delta-G solvation = -4116.145492 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.093 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.98792 -40.42988 -40.04990 -37.40652 -36.65216 -35.94607 -33.08049 -32.41329 -31.79242 -31.10216 -28.76169 -27.64082 -24.82834 -23.99833 -23.11302 -22.25299 -21.19159 -20.03433 -17.62444 -17.57813 -17.43130 -17.23097 -16.72964 -16.46476 -16.20259 -15.91695 -14.98704 -14.72451 -14.33363 -14.24995 -13.87736 -13.66715 -13.58972 -13.22705 -13.10002 -12.85058 -12.58601 -12.42038 -12.21618 -12.00474 -11.75185 -11.67045 -11.58491 -11.36704 -11.31181 -10.79376 -10.63728 -10.44174 -10.12732 -10.00082 -9.73802 -9.70682 -9.46661 -8.77697 -8.65181 -7.76266 -6.15869 -4.15563 0.72783 1.02483 1.70529 2.55090 2.78485 3.22182 3.26552 3.31434 3.43571 3.89920 4.31508 4.35545 4.46832 4.61344 4.86125 4.87461 4.87676 4.97836 5.03118 5.14892 5.20697 5.31578 5.45544 5.47888 5.62013 5.66857 5.69651 5.80009 5.86398 5.92013 6.13377 6.41591 6.50038 6.57542 6.66193 7.31043 7.48675 7.57901 7.65877 8.12017 8.47856 8.92654 9.43787 10.96791 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.008145 B = 0.004764 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3436.891855 B = 5875.508522 C = 8588.947796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.365 6.365 4 C 0.461 3.539 5 O -0.494 6.494 6 C 0.072 3.928 7 N -0.509 5.509 8 C 0.158 3.842 9 C -0.517 4.517 10 H 0.082 0.918 11 C 0.074 3.926 12 N -0.893 5.893 13 Si 0.868 3.132 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.266 1.266 17 C 0.091 3.909 18 C -0.079 4.079 19 C 0.119 3.881 20 N -0.452 5.452 21 C 0.138 3.862 22 Cl -0.023 7.023 23 C 0.064 3.936 24 F -0.121 7.121 25 C -0.070 4.070 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.135 0.865 33 H -0.001 1.001 34 H 0.034 0.966 35 H 0.265 0.735 36 H 0.085 0.915 37 H 0.048 0.952 38 H 0.170 0.830 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.581 -8.279 13.333 16.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.283 6.283 4 C 0.303 3.697 5 O -0.379 6.379 6 C -0.057 4.057 7 N -0.234 5.234 8 C 0.033 3.967 9 C -0.555 4.555 10 H 0.100 0.900 11 C -0.129 4.129 12 N -0.531 5.531 13 Si 0.694 3.306 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.190 1.190 17 C -0.037 4.037 18 C -0.082 4.082 19 C -0.039 4.039 20 N -0.161 5.161 21 C -0.028 4.028 22 Cl 0.005 6.995 23 C 0.042 3.958 24 F -0.099 7.099 25 C -0.097 4.097 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.153 0.847 33 H 0.017 0.983 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.187 0.813 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.401 -8.244 13.006 15.770 hybrid contribution -0.001 0.355 0.505 0.618 sum -3.402 -7.889 13.511 16.011 Atomic orbital electron populations 1.21795 0.92976 1.02639 1.03471 1.22923 0.95056 0.80841 1.02352 1.86512 1.25311 1.31834 1.84612 1.24052 0.79962 0.93375 0.72353 1.90611 1.60156 1.42894 1.44270 1.21551 0.89075 0.89325 1.05773 1.61528 1.04883 1.38043 1.18907 1.20406 0.94367 0.83964 0.97994 1.20936 1.39945 1.05611 0.89006 0.90011 1.24870 0.95398 0.97892 0.94745 1.69878 1.45979 1.29626 1.07654 0.86979 0.80712 0.82179 0.80683 1.19780 1.20980 1.19032 1.21071 0.90168 1.01010 0.91484 1.20712 0.97762 0.92620 0.97059 1.22712 0.86123 0.99965 0.95063 1.67076 1.16950 1.19207 1.12908 1.21667 0.87716 0.90060 1.03329 1.98403 1.09293 1.95246 1.96541 1.18187 0.92244 0.80210 1.05195 1.91541 1.88246 1.37541 1.92590 1.21572 0.92721 0.98910 0.96453 0.91412 0.90563 0.91656 0.91332 0.91642 0.91328 0.84694 0.98305 0.94826 0.92449 0.89679 0.93404 0.81283 0.82164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.29 37.16 0.38 -0.85 16 2 C 0.06 0.70 6.19 37.16 0.23 0.93 16 3 O -0.37 -5.10 10.22 -39.24 -0.40 -5.50 16 4 C 0.46 7.35 7.51 36.00 0.27 7.62 16 5 O -0.49 -8.94 15.17 -18.75 -0.28 -9.22 16 6 C 0.07 1.16 5.42 -4.98 -0.03 1.13 16 7 N -0.51 -9.33 3.98 -238.96 -0.95 -10.28 16 8 C 0.16 3.36 3.64 -4.97 -0.02 3.34 16 9 C -0.52 -13.63 8.91 -34.44 -0.31 -13.94 16 10 H 0.08 2.40 7.99 -52.49 -0.42 1.98 16 11 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 12 N -0.89 -26.35 13.96 55.43 0.77 -25.58 16 13 Si 0.87 20.25 27.49 -169.99 -4.67 15.58 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.27 -5.71 6.51 56.52 0.37 -5.34 16 17 C 0.09 1.33 4.78 -4.98 -0.02 1.31 16 18 C -0.08 -1.20 4.95 -104.49 -0.52 -1.72 16 19 C 0.12 1.87 9.04 -17.55 -0.16 1.71 16 20 N -0.45 -7.60 10.34 -10.31 -0.11 -7.71 16 21 C 0.14 2.22 7.28 -17.37 -0.13 2.10 16 22 Cl -0.02 -0.34 28.78 -51.86 -1.49 -1.83 16 23 C 0.06 1.00 7.31 -39.25 -0.29 0.71 16 24 F -0.12 -1.81 16.86 2.25 0.04 -1.77 16 25 C -0.07 -1.05 9.85 -39.22 -0.39 -1.43 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 30 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 31 H 0.07 0.91 8.01 -51.93 -0.42 0.49 16 32 H 0.14 2.41 7.11 -51.93 -0.37 2.04 16 33 H 0.00 -0.01 7.02 -51.93 -0.36 -0.38 16 34 H 0.03 0.73 4.60 -51.93 -0.24 0.49 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.08 1.16 6.76 -51.93 -0.35 0.81 16 37 H 0.05 0.60 8.07 -51.93 -0.42 0.18 16 38 H 0.17 2.36 7.70 -52.49 -0.40 1.95 16 39 H 0.16 2.24 8.06 -52.48 -0.42 1.81 16 LS Contribution 352.47 15.07 5.31 5.31 Total: -1.00 -30.95 352.47 -7.54 -38.49 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -4.69 Total: -0.32 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.07 Total: 2.83 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: -0.28 Total: -43.57 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.69 Total: -14.72 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.67 Total: 15.58 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.49 Total: -1.83 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.95 -7.54 -38.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237408239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.235 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds