Wall clock time and date at job start Tue Mar 31 2020 16:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46656 * 2 1 4 4 C 1.50693 * 109.47271 * 239.99500 * 2 1 3 5 5 H 1.07998 * 120.00342 * 239.99990 * 4 2 1 6 6 C 1.37882 * 119.99737 * 59.99865 * 4 2 1 7 7 N 1.31518 * 120.00167 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99743 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47393 * 270.00113 * 8 6 4 10 10 H 1.48490 * 109.47128 * 30.00455 * 8 6 4 11 11 H 1.48509 * 109.46700 * 150.00230 * 8 6 4 12 12 O 1.45204 * 109.47124 * 119.99552 * 2 1 3 13 13 C 1.34748 * 117.00147 * 270.00303 * 12 2 1 14 14 O 1.21510 * 119.99859 * 359.97438 * 13 12 2 15 15 C 1.47457 * 120.00331 * 180.02562 * 13 12 2 16 16 C 1.39803 * 120.08763 * 359.72344 * 15 13 12 17 17 C 1.37678 * 119.90700 * 179.67271 * 16 15 13 18 18 C 1.39038 * 120.08690 * 0.62494 * 17 16 15 19 19 O 1.35685 * 119.90558 * 179.69248 * 18 17 16 20 20 C 1.35927 * 118.00158 * 247.42631 * 19 18 17 21 21 C 1.38733 * 120.03337 * 5.84791 * 20 19 18 22 22 C 1.38139 * 119.96750 * 179.74226 * 21 20 19 23 23 C 1.38465 * 120.03014 * 0.53739 * 22 21 20 24 24 F 1.35101 * 119.96564 * 179.69549 * 23 22 21 25 25 C 1.38458 * 120.06322 * 359.71993 * 23 22 21 26 26 C 1.38136 * 120.03684 * 0.02562 * 25 23 22 27 27 C 1.39037 * 120.18546 * 359.67145 * 18 17 16 28 28 C 1.37669 * 120.09356 * 0.02562 * 27 18 17 29 29 H 1.09007 * 109.46921 * 300.00256 * 1 2 3 30 30 H 1.08999 * 109.47150 * 60.00606 * 1 2 3 31 31 H 1.08997 * 109.46873 * 180.02562 * 1 2 3 32 32 H 0.96998 * 119.99834 * 179.97438 * 7 6 4 33 33 H 1.08001 * 120.04790 * 359.97383 * 16 15 13 34 34 H 1.07996 * 119.95496 * 180.31770 * 17 16 15 35 35 H 1.08001 * 120.01550 * 0.02562 * 21 20 19 36 36 H 1.08001 * 119.98174 * 180.25269 * 22 21 20 37 37 H 1.08003 * 119.98155 * 180.02562 * 25 23 22 38 38 H 1.07999 * 120.01704 * 179.97438 * 26 25 23 39 39 H 1.08001 * 119.95842 * 180.02562 * 27 18 17 40 40 H 1.08001 * 120.05161 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 3.6305 -0.5443 -4.4118 10 1 2.4880 -2.5655 -3.7120 11 1 1.3444 -0.9493 -5.1122 12 8 2.0141 -0.6844 1.1856 13 6 2.2179 0.0670 2.2854 14 8 1.9977 1.2616 2.2544 15 6 2.7093 -0.5601 3.5262 16 6 2.9588 -1.9351 3.5654 17 6 3.4239 -2.5156 4.7239 18 6 3.6332 -1.7385 5.8577 19 8 4.0858 -2.3155 6.9993 20 6 3.2457 -2.3630 8.0668 21 6 1.9303 -1.9423 7.9345 22 6 1.0763 -1.9961 9.0190 23 6 1.5356 -2.4592 10.2404 24 9 0.7009 -2.5055 11.3017 25 6 2.8495 -2.8743 10.3752 26 6 3.7045 -2.8266 9.2913 27 6 3.3804 -0.3717 5.8247 28 6 2.9211 0.2177 4.6685 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.7095 1.1616 -3.4844 33 1 2.7915 -2.5403 2.6867 34 1 3.6218 -3.5769 4.7535 35 1 1.5730 -1.5772 6.9830 36 1 0.0512 -1.6725 8.9152 37 1 3.2063 -3.2357 11.3285 38 1 4.7294 -3.1501 9.3969 39 1 3.5447 0.2286 6.7074 40 1 2.7246 1.2794 4.6438 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733709708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:34 Heat of formation + Delta-G solvation = -109.231502 kcal Electronic energy + Delta-G solvation = -26211.860406 eV Core-core repulsion = 22064.965851 eV Total energy + Delta-G solvation = -4146.894556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.17948 -41.33397 -39.80188 -38.62626 -37.33817 -35.72351 -33.32699 -31.80778 -31.33596 -31.01821 -29.79216 -29.25051 -25.38621 -24.79755 -23.52308 -23.09900 -22.53912 -21.44325 -19.93320 -19.09631 -18.05826 -17.66447 -17.25979 -16.81626 -16.15579 -15.93592 -15.77910 -15.51759 -15.10257 -14.95575 -14.76485 -14.44938 -14.08317 -13.91163 -13.68734 -13.64241 -13.27923 -13.12465 -12.70549 -12.52393 -12.20016 -12.10936 -11.82688 -11.37122 -11.27124 -11.11692 -11.05347 -10.90450 -10.41620 -10.33066 -9.85967 -9.64495 -9.62153 -9.28382 -9.06801 -8.96541 -8.54044 -8.47786 -6.22807 -4.30012 0.42233 0.71263 0.78394 1.12037 2.52208 3.02196 3.12248 3.22031 3.27080 3.30487 3.50574 3.76822 3.90217 4.27305 4.29257 4.34612 4.59841 4.62929 4.70187 4.83715 4.97280 5.10042 5.11522 5.14706 5.38327 5.42026 5.53049 5.68056 5.71281 5.77172 5.78163 6.02581 6.02890 6.25526 6.28543 6.49028 6.58226 6.83753 6.84864 7.06842 7.16112 7.53463 7.66370 7.85916 8.07570 8.52274 8.80732 9.35471 10.84647 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.026843 B = 0.002105 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.865922 B =13299.765740 C =13616.265724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H 0.048 0.952 4 C -0.522 4.522 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.888 5.888 8 Si 0.913 3.087 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.284 1.284 12 O -0.349 6.349 13 C 0.494 3.506 14 O -0.514 6.514 15 C -0.110 4.110 16 C -0.045 4.045 17 C -0.133 4.133 18 C 0.102 3.898 19 O -0.252 6.252 20 C 0.115 3.885 21 C -0.165 4.165 22 C -0.113 4.113 23 C 0.063 3.937 24 F -0.141 7.141 25 C -0.117 4.117 26 C -0.117 4.117 27 C -0.153 4.153 28 C -0.045 4.045 29 H 0.016 0.984 30 H 0.100 0.900 31 H 0.037 0.963 32 H 0.267 0.733 33 H 0.153 0.847 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.137 0.863 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.796 -7.329 23.614 25.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.560 4.560 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.526 5.526 8 Si 0.740 3.260 9 H -0.204 1.204 10 H -0.196 1.196 11 H -0.209 1.209 12 O -0.266 6.266 13 C 0.338 3.662 14 O -0.405 6.405 15 C -0.111 4.111 16 C -0.063 4.063 17 C -0.151 4.151 18 C 0.060 3.940 19 O -0.164 6.164 20 C 0.072 3.928 21 C -0.183 4.183 22 C -0.132 4.132 23 C 0.044 3.956 24 F -0.119 7.119 25 C -0.135 4.135 26 C -0.135 4.135 27 C -0.172 4.172 28 C -0.063 4.063 29 H 0.035 0.965 30 H 0.119 0.881 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.171 0.829 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.155 0.845 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.779 -6.944 23.431 24.728 hybrid contribution -0.044 -0.133 -0.756 0.769 sum 3.736 -7.077 22.675 24.046 Atomic orbital electron populations 1.22172 0.97421 1.00199 1.01495 1.20697 0.91462 0.93994 0.77470 0.93436 1.21003 1.32604 1.13571 0.88783 0.91238 1.24897 0.94887 0.95117 0.99105 1.69896 1.35946 1.22514 1.24257 0.86257 0.78563 0.79876 0.81349 1.20379 1.19573 1.20931 1.86542 1.75711 1.43191 1.21112 1.20882 0.75209 0.85327 0.84748 1.90787 1.48730 1.16183 1.84815 1.19601 1.04176 0.94335 0.92963 1.21523 0.92994 0.93837 0.97919 1.21132 1.00891 1.00707 0.92354 1.18937 0.98558 0.91099 0.85416 1.84331 1.38999 1.74737 1.18328 1.19167 0.88988 0.97502 0.87176 1.21305 0.92631 1.03956 1.00429 1.21000 1.01110 0.99982 0.91064 1.17630 0.88760 1.04705 0.84489 1.91503 1.71023 1.94583 1.54823 1.20950 0.91741 1.00972 0.99879 1.20274 1.01121 1.02979 0.89163 1.21338 1.02449 0.93777 0.99612 1.21185 0.94017 1.00901 0.90180 0.96480 0.88142 0.94347 0.92337 0.82946 0.84176 0.83971 0.84154 0.83862 0.83841 0.84524 0.83685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 9.33 37.16 0.35 -3.51 16 2 C 0.22 5.68 2.56 -27.88 -0.07 5.61 16 3 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 4 C -0.52 -14.32 8.90 -34.44 -0.31 -14.63 16 5 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.88 11.32 55.43 0.63 -24.25 16 8 Si 0.91 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 O -0.35 -8.03 9.11 -40.62 -0.37 -8.40 16 13 C 0.49 10.16 7.86 34.49 0.27 10.44 16 14 O -0.51 -11.87 15.60 -19.27 -0.30 -12.17 16 15 C -0.11 -1.70 5.87 -104.97 -0.62 -2.32 16 16 C -0.04 -0.59 9.61 -39.20 -0.38 -0.96 16 17 C -0.13 -1.46 9.97 -39.49 -0.39 -1.85 16 18 C 0.10 1.12 4.73 -38.99 -0.18 0.94 16 19 O -0.25 -2.65 9.98 -3.04 -0.03 -2.68 16 20 C 0.11 1.07 6.54 -39.22 -0.26 0.82 16 21 C -0.16 -1.50 8.79 -39.43 -0.35 -1.85 16 22 C -0.11 -0.96 10.02 -39.53 -0.40 -1.36 16 23 C 0.06 0.55 7.30 -39.42 -0.29 0.26 16 24 F -0.14 -1.34 17.27 2.25 0.04 -1.30 16 25 C -0.12 -0.85 10.02 -39.54 -0.40 -1.24 16 26 C -0.12 -0.89 9.99 -39.44 -0.39 -1.29 16 27 C -0.15 -1.66 8.31 -39.49 -0.33 -1.99 16 28 C -0.04 -0.58 9.59 -39.20 -0.38 -0.96 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 2.67 6.07 -51.93 -0.32 2.36 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.15 1.98 7.60 -52.49 -0.40 1.58 16 34 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.14 1.31 6.18 -52.49 -0.32 0.99 16 36 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 38 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.15 1.84 7.64 -52.49 -0.40 1.44 16 LS Contribution 356.17 15.07 5.37 5.37 Total: -1.00 -30.39 356.17 -8.21 -38.60 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -4.32 Total: 1.41 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -4.21 Total: -12.30 kcal Atomic # 7 Polarization: -24.88 SS G_CDS: 0.63 Total: -24.25 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.70 Total: -23.25 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.39 -8.21 -38.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.631 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds