Wall clock time and date at job start Tue Mar 31 2020 16:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46656 * 2 1 4 4 C 1.50693 * 109.47271 * 239.99500 * 2 1 3 5 5 H 1.07998 * 120.00342 * 239.99990 * 4 2 1 6 6 C 1.37882 * 119.99737 * 59.99865 * 4 2 1 7 7 N 1.31518 * 120.00167 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99743 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47393 * 270.00113 * 8 6 4 10 10 H 1.48490 * 109.47128 * 30.00455 * 8 6 4 11 11 H 1.48509 * 109.46700 * 150.00230 * 8 6 4 12 12 O 1.45204 * 109.47124 * 119.99552 * 2 1 3 13 13 C 1.34748 * 117.00147 * 270.00303 * 12 2 1 14 14 O 1.21510 * 119.99859 * 359.97438 * 13 12 2 15 15 C 1.47457 * 120.00331 * 180.02562 * 13 12 2 16 16 C 1.39803 * 120.08763 * 359.72344 * 15 13 12 17 17 C 1.37678 * 119.90700 * 179.67271 * 16 15 13 18 18 C 1.39038 * 120.08690 * 0.62494 * 17 16 15 19 19 O 1.35685 * 119.90558 * 179.69248 * 18 17 16 20 20 C 1.35927 * 118.00158 * 247.42631 * 19 18 17 21 21 C 1.38733 * 120.03337 * 5.84791 * 20 19 18 22 22 C 1.38139 * 119.96750 * 179.74226 * 21 20 19 23 23 C 1.38465 * 120.03014 * 0.53739 * 22 21 20 24 24 F 1.35101 * 119.96564 * 179.69549 * 23 22 21 25 25 C 1.38458 * 120.06322 * 359.71993 * 23 22 21 26 26 C 1.38136 * 120.03684 * 0.02562 * 25 23 22 27 27 C 1.39037 * 120.18546 * 359.67145 * 18 17 16 28 28 C 1.37669 * 120.09356 * 0.02562 * 27 18 17 29 29 H 1.09007 * 109.46921 * 300.00256 * 1 2 3 30 30 H 1.08999 * 109.47150 * 60.00606 * 1 2 3 31 31 H 1.08997 * 109.46873 * 180.02562 * 1 2 3 32 32 H 0.96998 * 119.99834 * 179.97438 * 7 6 4 33 33 H 1.08001 * 120.04790 * 359.97383 * 16 15 13 34 34 H 1.07996 * 119.95496 * 180.31770 * 17 16 15 35 35 H 1.08001 * 120.01550 * 0.02562 * 21 20 19 36 36 H 1.08001 * 119.98174 * 180.25269 * 22 21 20 37 37 H 1.08003 * 119.98155 * 180.02562 * 25 23 22 38 38 H 1.07999 * 120.01704 * 179.97438 * 26 25 23 39 39 H 1.08001 * 119.95842 * 180.02562 * 27 18 17 40 40 H 1.08001 * 120.05161 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 3.6305 -0.5443 -4.4118 10 1 2.4880 -2.5655 -3.7120 11 1 1.3444 -0.9493 -5.1122 12 8 2.0141 -0.6844 1.1856 13 6 2.2179 0.0670 2.2854 14 8 1.9977 1.2616 2.2544 15 6 2.7093 -0.5601 3.5262 16 6 2.9588 -1.9351 3.5654 17 6 3.4239 -2.5156 4.7239 18 6 3.6332 -1.7385 5.8577 19 8 4.0858 -2.3155 6.9993 20 6 3.2457 -2.3630 8.0668 21 6 1.9303 -1.9423 7.9345 22 6 1.0763 -1.9961 9.0190 23 6 1.5356 -2.4592 10.2404 24 9 0.7009 -2.5055 11.3017 25 6 2.8495 -2.8743 10.3752 26 6 3.7045 -2.8266 9.2913 27 6 3.3804 -0.3717 5.8247 28 6 2.9211 0.2177 4.6685 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.7095 1.1616 -3.4844 33 1 2.7915 -2.5403 2.6867 34 1 3.6218 -3.5769 4.7535 35 1 1.5730 -1.5772 6.9830 36 1 0.0512 -1.6725 8.9152 37 1 3.2063 -3.2357 11.3285 38 1 4.7294 -3.1501 9.3969 39 1 3.5447 0.2286 6.7074 40 1 2.7246 1.2794 4.6438 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733709708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:33 Heat of formation + Delta-G solvation = -123.264818 kcal Electronic energy + Delta-G solvation = -26212.468937 eV Core-core repulsion = 22064.965851 eV Total energy + Delta-G solvation = -4147.503086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.86645 -42.18316 -41.32236 -39.59307 -38.27306 -37.48968 -35.34804 -32.62312 -32.29457 -32.07454 -31.34419 -30.27384 -27.47238 -25.94968 -24.26500 -24.15161 -23.48227 -22.85342 -21.52983 -19.89300 -19.30589 -18.68606 -18.58079 -17.99547 -17.71258 -17.11987 -16.79930 -16.59471 -16.51402 -16.30825 -15.63619 -15.58662 -15.02883 -14.79596 -14.67166 -14.59809 -14.31662 -14.30251 -14.03629 -13.81531 -13.71259 -13.36127 -13.17109 -13.00093 -12.84258 -12.80141 -12.39630 -12.16278 -12.01209 -11.94981 -11.63124 -11.54142 -11.00930 -10.61360 -10.28248 -10.20031 -10.05412 -9.21575 -8.29430 -6.46262 -0.64426 0.08175 0.10730 0.18296 1.33733 1.42473 1.44375 1.55814 1.89253 1.98664 2.40567 2.48082 2.61928 3.01583 3.27174 3.61711 3.66067 3.70907 3.76886 3.81562 3.99374 4.10511 4.21780 4.25968 4.34017 4.49671 4.68017 4.76741 4.79182 4.86033 4.86654 4.95215 5.04239 5.07827 5.08701 5.13588 5.16285 5.25023 5.41821 5.47222 5.60343 5.72615 5.87828 6.03159 6.36092 6.57872 6.87392 7.24959 8.78411 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.026843 B = 0.002105 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.865922 B =13299.765740 C =13616.265724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.218 3.782 3 H 0.008 0.992 4 C -0.547 4.547 5 H 0.070 0.930 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.984 3.016 9 H -0.273 1.273 10 H -0.261 1.261 11 H -0.276 1.276 12 O -0.353 6.353 13 C 0.491 3.509 14 O -0.550 6.550 15 C -0.137 4.137 16 C -0.041 4.041 17 C -0.124 4.124 18 C 0.117 3.883 19 O -0.254 6.254 20 C 0.100 3.900 21 C -0.171 4.171 22 C -0.119 4.119 23 C 0.051 3.949 24 F -0.148 7.148 25 C -0.110 4.110 26 C -0.111 4.111 27 C -0.142 4.142 28 C -0.042 4.042 29 H 0.023 0.977 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.271 0.729 33 H 0.151 0.849 34 H 0.167 0.833 35 H 0.138 0.862 36 H 0.149 0.851 37 H 0.169 0.831 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.006 -9.328 25.289 27.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.165 3.835 3 H 0.026 0.974 4 C -0.584 4.584 5 H 0.088 0.912 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.807 3.193 9 H -0.198 1.198 10 H -0.185 1.185 11 H -0.201 1.201 12 O -0.269 6.269 13 C 0.337 3.663 14 O -0.443 6.443 15 C -0.138 4.138 16 C -0.060 4.060 17 C -0.142 4.142 18 C 0.074 3.926 19 O -0.166 6.166 20 C 0.057 3.943 21 C -0.190 4.190 22 C -0.137 4.137 23 C 0.032 3.968 24 F -0.126 7.126 25 C -0.128 4.128 26 C -0.129 4.129 27 C -0.161 4.161 28 C -0.060 4.060 29 H 0.042 0.958 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.169 0.831 34 H 0.184 0.816 35 H 0.156 0.844 36 H 0.167 0.833 37 H 0.186 0.814 38 H 0.183 0.817 39 H 0.178 0.822 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.989 -8.952 25.138 27.146 hybrid contribution -0.392 0.477 -1.047 1.216 sum 4.597 -8.475 24.090 25.948 Atomic orbital electron populations 1.21993 0.96630 1.00549 1.00852 1.20401 0.92105 0.92135 0.78905 0.97440 1.21282 1.33412 1.13981 0.89729 0.91152 1.25853 0.94720 0.95709 1.02204 1.70020 1.36555 1.23663 1.25252 0.85163 0.78057 0.78998 0.77085 1.19834 1.18497 1.20123 1.86521 1.76143 1.43102 1.21165 1.21780 0.74112 0.85085 0.85279 1.90755 1.50514 1.17681 1.85333 1.19376 1.07508 0.95608 0.91309 1.21497 0.92985 0.92669 0.98808 1.21301 0.99734 1.01917 0.91293 1.19031 0.96651 0.91095 0.85811 1.84310 1.39199 1.74819 1.18277 1.19352 0.88972 0.98636 0.87326 1.21292 0.92830 1.04439 1.00433 1.21127 1.01624 0.99968 0.91020 1.17865 0.89400 1.05177 0.84342 1.91488 1.71366 1.94682 1.55103 1.21235 0.90926 0.99794 1.00853 1.20543 1.02148 1.01901 0.88324 1.21475 1.01209 0.94072 0.99298 1.21180 0.94014 1.00723 0.90080 0.95824 0.89981 0.93333 0.91977 0.83143 0.81586 0.84415 0.83307 0.81372 0.81699 0.82224 0.83952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.33 9.33 71.98 0.67 -6.66 16 2 C 0.22 11.94 2.56 29.85 0.08 12.02 16 3 H 0.01 0.48 7.16 -2.39 -0.02 0.46 16 4 C -0.55 -30.70 8.90 25.60 0.23 -30.47 16 5 H 0.07 3.83 7.81 -2.91 -0.02 3.81 16 6 C 0.01 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -52.43 11.32 21.45 0.24 -52.18 16 8 Si 0.98 42.41 29.54 68.60 2.03 44.44 16 9 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 10 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 11 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 12 O -0.35 -16.87 9.11 -56.58 -0.52 -17.39 16 13 C 0.49 21.08 7.86 70.25 0.55 21.63 16 14 O -0.55 -26.82 15.60 19.80 0.31 -26.51 16 15 C -0.14 -4.30 5.87 -20.09 -0.12 -4.42 16 16 C -0.04 -1.06 9.61 22.52 0.22 -0.84 16 17 C -0.12 -2.46 9.97 22.33 0.22 -2.24 16 18 C 0.12 2.27 4.73 22.65 0.11 2.38 16 19 O -0.25 -4.56 9.98 -33.78 -0.34 -4.90 16 20 C 0.10 1.59 6.54 22.51 0.15 1.74 16 21 C -0.17 -2.79 8.79 22.36 0.20 -2.60 16 22 C -0.12 -1.83 10.02 22.30 0.22 -1.60 16 23 C 0.05 0.79 7.30 22.38 0.16 0.95 16 24 F -0.15 -2.57 17.27 44.97 0.78 -1.79 16 25 C -0.11 -1.26 10.02 22.30 0.22 -1.03 16 26 C -0.11 -1.33 9.99 22.36 0.22 -1.11 16 27 C -0.14 -2.81 8.31 22.33 0.19 -2.62 16 28 C -0.04 -1.07 9.59 22.51 0.22 -0.86 16 29 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.08 4.52 6.07 -2.39 -0.01 4.51 16 31 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 33 H 0.15 3.87 7.60 -2.91 -0.02 3.85 16 34 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 35 H 0.14 2.33 6.18 -2.91 -0.02 2.31 16 36 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.17 1.05 8.06 -2.91 -0.02 1.02 16 38 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 39 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 40 H 0.14 3.69 7.64 -2.91 -0.02 3.67 16 Total: -1.00 -67.30 356.17 7.56 -59.74 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 1.08 Total: 13.05 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 3.98 Total: -14.45 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.24 Total: -52.18 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -0.54 Total: -48.80 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.78 Total: -1.79 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -67.30 7.56 -59.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.528 kcal (2) G-P(sol) polarization free energy of solvation -67.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds