Wall clock time and date at job start Tue Mar 31 2020 15:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 120.00234 * 2 1 4 4 H 1.48498 * 109.47115 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46875 * 300.00009 * 3 2 1 6 6 H 1.48497 * 109.47091 * 60.00254 * 3 2 1 7 7 C 1.38820 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99871 * 197.26604 * 7 2 1 9 9 N 1.36934 * 119.99795 * 17.26991 * 7 2 1 10 10 C 1.46928 * 120.63084 * 207.39526 * 9 7 2 11 11 C 1.53194 * 108.88836 * 233.67060 * 10 9 7 12 12 C 1.53034 * 109.31631 * 305.29172 * 11 10 9 13 13 N 1.46500 * 109.46529 * 181.38799 * 12 11 10 14 14 C 1.34772 * 120.00435 * 154.99802 * 13 12 11 15 15 O 1.21597 * 120.00003 * 359.97438 * 14 13 12 16 16 C 1.47494 * 119.99951 * 179.97438 * 14 13 12 17 17 C 1.39074 * 120.01963 * 359.72705 * 16 14 13 18 18 C 1.38324 * 120.01859 * 179.76540 * 17 16 14 19 19 C 1.37389 * 120.66329 * 0.51109 * 18 17 16 20 20 C 1.41059 * 120.69314 * 359.74448 * 19 18 17 21 21 C 1.45461 * 129.28332 * 179.97438 * 20 19 18 22 22 C 1.31755 * 114.91187 * 179.97438 * 21 20 19 23 23 S 1.75297 * 111.40563 * 0.02562 * 22 21 20 24 24 C 1.39728 * 118.92476 * 359.97438 * 20 19 18 25 25 C 1.53045 * 109.53746 * 61.36443 * 12 11 10 26 26 C 1.47211 * 120.81293 * 27.52334 * 9 7 2 27 27 H 0.97008 * 119.99917 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.58841 * 113.81417 * 10 9 7 29 29 H 1.09000 * 109.58556 * 353.52432 * 10 9 7 30 30 H 1.08997 * 109.49689 * 65.24193 * 11 10 9 31 31 H 1.09004 * 109.49506 * 185.33876 * 11 10 9 32 32 H 1.08998 * 109.46101 * 301.34725 * 12 11 10 33 33 H 0.97000 * 119.99720 * 335.00078 * 13 12 11 34 34 H 1.08004 * 119.99361 * 0.02562 * 17 16 14 35 35 H 1.07996 * 119.66818 * 180.23032 * 18 17 16 36 36 H 1.08004 * 119.65527 * 179.76650 * 19 18 17 37 37 H 1.08003 * 122.54800 * 0.02562 * 21 20 19 38 38 H 1.07996 * 124.30365 * 180.02562 * 22 21 20 39 39 H 1.09000 * 109.49621 * 58.58963 * 25 12 11 40 40 H 1.09003 * 109.49716 * 178.65330 * 25 12 11 41 41 H 1.08998 * 109.53679 * 6.54866 * 26 9 7 42 42 H 1.08996 * 109.68174 * 246.23216 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0537 -1.2234 0.2770 9 7 1.3719 -2.3612 -0.3531 10 6 1.8235 -3.6554 0.1759 11 6 2.0758 -4.6094 -0.9959 12 6 0.8163 -4.6924 -1.8612 13 7 1.0428 -5.6295 -2.9643 14 6 -0.0019 -6.2523 -3.5448 15 8 -1.1326 -6.0368 -3.1527 16 6 0.2262 -7.1952 -4.6558 17 6 1.5187 -7.4377 -5.1083 18 6 1.7330 -8.3257 -6.1470 19 6 0.6781 -8.9681 -6.7486 20 6 -0.6451 -8.7397 -6.3165 21 6 -1.8876 -9.3106 -6.8128 22 6 -2.9748 -8.8952 -6.1953 23 16 -2.5913 -7.7478 -4.9267 24 6 -0.8679 -7.8482 -5.2638 25 6 0.4917 -3.3079 -2.4268 26 6 0.2214 -2.3391 -1.2713 27 1 -0.4850 0.8401 0.0004 28 1 1.0553 -4.0720 0.8274 29 1 2.7459 -3.5177 0.7401 30 1 2.9056 -4.2367 -1.5962 31 1 2.3196 -5.6001 -0.6123 32 1 -0.0190 -5.0416 -1.2542 33 1 1.9448 -5.8017 -3.2768 34 1 2.3557 -6.9357 -4.6459 35 1 2.7394 -8.5126 -6.4914 36 1 0.8638 -9.6554 -7.5608 37 1 -1.9166 -10.0216 -7.6252 38 1 -3.9753 -9.2203 -6.4396 39 1 1.3366 -2.9475 -3.0137 40 1 -0.3915 -3.3724 -3.0623 41 1 0.0874 -1.3310 -1.6635 42 1 -0.6788 -2.6470 -0.7394 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395425310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:09 Heat of formation + Delta-G solvation = 32.360030 kcal Electronic energy + Delta-G solvation = -25128.703491 eV Core-core repulsion = 21586.454732 eV Total energy + Delta-G solvation = -3542.248759 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.36545 -38.99431 -37.27730 -35.40039 -34.45174 -32.32187 -31.34735 -30.05958 -29.71105 -29.16142 -25.38610 -24.02758 -23.78401 -22.24850 -21.90189 -21.07549 -20.15662 -19.45502 -18.35199 -16.99206 -16.61728 -16.27052 -15.73326 -15.19191 -15.04107 -14.89699 -14.73513 -13.98433 -13.90740 -13.79310 -13.56355 -13.50605 -13.00643 -12.75349 -12.57671 -12.42206 -11.98562 -11.76567 -11.53904 -11.49514 -11.14935 -10.94912 -10.77295 -10.73905 -10.39922 -10.22735 -10.07702 -9.85983 -9.82700 -9.76280 -9.49271 -8.84050 -8.75774 -8.43803 -7.88369 -6.69469 -5.78249 -3.20643 0.31889 0.75341 1.42377 1.90725 1.97473 2.89756 3.25575 3.37841 3.45299 3.47321 3.61372 4.29183 4.46454 4.49597 4.55976 4.78393 4.93294 5.05852 5.23925 5.33089 5.38240 5.44562 5.45147 5.58841 5.61836 5.67732 5.81362 5.87359 6.02264 6.07312 6.14319 6.22514 6.31801 6.41257 6.45070 6.59209 6.64526 6.77018 6.89215 6.92874 7.37303 7.62976 7.69510 7.79942 8.30274 8.44541 9.20549 9.84179 10.41105 11.30449 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.023359 B = 0.002619 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.398160 B =10688.461497 C =11217.790077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.253 4.253 8 H 0.067 0.933 9 N -0.593 5.593 10 C 0.149 3.851 11 C -0.139 4.139 12 C 0.151 3.849 13 N -0.716 5.716 14 C 0.549 3.451 15 O -0.527 6.527 16 C -0.097 4.097 17 C -0.068 4.068 18 C -0.130 4.130 19 C -0.056 4.056 20 C -0.087 4.087 21 C -0.126 4.126 22 C -0.217 4.217 23 S 0.169 5.831 24 C -0.103 4.103 25 C -0.146 4.146 26 C 0.173 3.827 27 H 0.254 0.746 28 H 0.020 0.980 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.394 0.606 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.143 0.857 38 H 0.166 0.834 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.090 0.910 42 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.188 -20.660 -14.734 25.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.021 3.979 11 C -0.179 4.179 12 C 0.048 3.952 13 N -0.366 5.366 14 C 0.335 3.665 15 O -0.405 6.405 16 C -0.105 4.105 17 C -0.089 4.089 18 C -0.150 4.150 19 C -0.076 4.076 20 C -0.096 4.096 21 C -0.156 4.156 22 C -0.351 4.351 23 S 0.434 5.566 24 C -0.221 4.221 25 C -0.186 4.186 26 C 0.047 3.953 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.229 0.771 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.160 0.840 38 H 0.184 0.816 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -0.720 -19.548 -13.381 23.700 hybrid contribution 1.706 -0.041 -1.302 2.147 sum 0.986 -19.589 -14.683 24.501 Atomic orbital electron populations 1.70044 1.05264 1.25435 1.53739 1.25054 0.95280 0.98443 1.00911 0.86240 0.79320 0.84010 0.77283 1.20276 1.21573 1.21720 1.19210 0.92676 0.84810 1.41589 0.91559 1.44176 1.35513 1.01314 1.50574 1.20830 0.98003 0.86763 0.92281 1.22345 0.96584 0.99810 0.99161 1.21101 0.98898 0.88770 0.86432 1.46223 1.08881 1.44844 1.36649 1.18128 0.85448 0.80544 0.82376 1.90780 1.22197 1.64076 1.63458 1.19418 0.92369 1.00088 0.98595 1.21280 0.95135 0.96620 0.95898 1.20866 0.99311 0.97774 0.97061 1.21109 0.90232 0.97899 0.98384 1.19319 0.94462 0.98826 0.96991 1.20821 0.89971 1.02594 1.02209 1.25554 1.02883 1.04076 1.02626 1.85187 0.95907 1.42301 1.33157 1.22805 0.98434 1.00954 0.99866 1.22563 1.00527 0.94986 1.00565 1.20806 0.88579 0.98242 0.87690 0.93626 0.96175 0.92319 0.91816 0.92566 0.89815 0.77132 0.84794 0.84766 0.85196 0.83983 0.81613 0.92648 0.92769 0.89179 0.96065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 11.18 55.49 0.62 -25.76 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.25 -6.91 9.59 -15.06 -0.14 -7.05 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -14.79 3.01 -172.09 -0.52 -15.31 16 10 C 0.15 3.04 6.51 -3.71 -0.02 3.01 16 11 C -0.14 -2.28 5.55 -26.61 -0.15 -2.43 16 12 C 0.15 2.63 2.42 -67.89 -0.16 2.47 16 13 N -0.72 -10.27 5.02 -54.82 -0.28 -10.54 16 14 C 0.55 8.68 7.72 -12.49 -0.10 8.58 16 15 O -0.53 -10.15 14.65 5.28 0.08 -10.07 16 16 C -0.10 -1.28 5.90 -104.70 -0.62 -1.89 16 17 C -0.07 -0.66 9.52 -39.24 -0.37 -1.03 16 18 C -0.13 -1.03 9.98 -39.86 -0.40 -1.43 16 19 C -0.06 -0.48 10.08 -38.82 -0.39 -0.87 16 20 C -0.09 -0.95 6.04 -105.40 -0.64 -1.58 16 21 C -0.13 -1.16 10.39 -38.59 -0.40 -1.56 16 22 C -0.22 -2.09 11.02 28.85 0.32 -1.77 16 23 S 0.17 2.20 21.37 -107.50 -2.30 -0.09 16 24 C -0.10 -1.38 6.33 -37.91 -0.24 -1.62 16 25 C -0.15 -2.94 5.65 -26.61 -0.15 -3.09 16 26 C 0.17 4.23 5.33 -3.55 -0.02 4.21 16 27 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 33 H 0.39 4.37 6.61 -40.82 -0.27 4.10 16 34 H 0.13 0.97 6.37 -52.48 -0.33 0.64 16 35 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 37 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 38 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.09 2.46 6.04 -51.93 -0.31 2.15 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 354.88 15.07 5.35 5.35 Total: -1.00 -32.81 354.88 -11.15 -43.96 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.50 Total: 1.93 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -3.57 Total: -6.09 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.17 Total: -51.61 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.30 Total: -0.09 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.81 -11.15 -43.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395425310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.320 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds