Wall clock time and date at job start Tue Mar 31 2020 16:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 S 1.81391 * 109.47469 * 23.00591 * 3 2 1 5 5 C 1.76206 * 103.00287 * 179.97438 * 4 3 2 6 6 C 1.39040 * 120.18000 * 0.02588 * 5 4 3 7 7 C 1.37913 * 120.05871 * 179.97438 * 6 5 4 8 8 C 1.38655 * 120.43113 * 359.97438 * 7 6 5 9 9 C 1.37729 * 120.36790 * 359.72344 * 8 7 6 10 10 C 1.39745 * 119.93597 * 0.55560 * 9 8 7 11 11 C 1.47386 * 120.21470 * 179.72158 * 10 9 8 12 12 O 1.21609 * 119.99971 * 125.93884 * 11 10 9 13 13 N 1.34776 * 120.00113 * 305.93013 * 11 10 9 14 14 C 1.46928 * 120.62919 * 354.27823 * 13 11 10 15 15 C 1.53189 * 108.77806 * 233.60439 * 14 13 11 16 16 C 1.53044 * 109.31235 * 305.36906 * 15 14 13 17 17 C 1.53039 * 109.53937 * 61.36073 * 16 15 14 18 18 H 1.09002 * 109.50017 * 58.61910 * 17 16 15 19 19 C 1.50701 * 109.49774 * 178.68126 * 17 16 15 20 20 H 1.08001 * 119.99827 * 359.93720 * 19 17 16 21 21 C 1.37878 * 119.99924 * 179.65928 * 19 17 16 22 22 N 1.31517 * 119.99891 * 0.27860 * 21 19 17 23 23 Si 1.86797 * 119.99913 * 180.27878 * 21 19 17 24 24 H 1.48494 * 109.47213 * 90.00061 * 23 21 19 25 25 H 1.48505 * 109.47164 * 210.00223 * 23 21 19 26 26 H 1.48504 * 109.47023 * 330.00057 * 23 21 19 27 27 C 1.46933 * 120.60617 * 174.29741 * 13 11 10 28 28 H 1.09002 * 109.46918 * 263.00121 * 3 2 1 29 29 H 1.09006 * 109.47000 * 143.00890 * 3 2 1 30 30 H 1.08005 * 119.97115 * 359.94857 * 6 5 4 31 31 H 1.07997 * 119.78362 * 179.97438 * 7 6 5 32 32 H 1.07994 * 119.81058 * 180.02562 * 8 7 6 33 33 H 1.08005 * 120.03446 * 180.30316 * 9 8 7 34 34 H 1.09000 * 109.58661 * 113.81726 * 14 13 11 35 35 H 1.09000 * 109.59107 * 353.39942 * 14 13 11 36 36 H 1.08996 * 109.49759 * 185.41353 * 15 14 13 37 37 H 1.08999 * 109.52132 * 65.33323 * 15 14 13 38 38 H 1.08999 * 109.45658 * 301.33832 * 16 15 14 39 39 H 1.08998 * 109.45679 * 181.38175 * 16 15 14 40 40 H 0.97001 * 119.99615 * 179.97438 * 22 21 19 41 41 H 1.09001 * 109.61445 * 6.62040 * 27 13 11 42 42 H 1.09004 * 109.55846 * 246.19702 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 16 3.2134 -1.5732 -0.6684 5 6 4.9642 -1.3893 -0.5915 6 6 5.5227 -0.2173 -0.0938 7 6 6.8933 -0.0762 -0.0342 8 6 7.7240 -1.0982 -0.4679 9 6 7.1897 -2.2691 -0.9583 10 6 5.8030 -2.4261 -1.0310 11 6 5.2246 -3.6741 -1.5605 12 8 4.4138 -4.2962 -0.9012 13 7 5.5942 -4.1259 -2.7753 14 6 6.4751 -3.3245 -3.6358 15 6 5.8061 -3.1535 -5.0033 16 6 5.4558 -4.5308 -5.5712 17 6 4.4701 -5.2346 -4.6358 18 1 3.5724 -4.6256 -4.5282 19 6 4.1008 -6.5772 -5.2121 20 1 4.5257 -6.8966 -6.1522 21 6 3.2250 -7.4002 -4.5363 22 7 2.7076 -7.0112 -3.3915 23 14 2.7734 -9.0677 -5.2469 24 1 3.7280 -10.0917 -4.7518 25 1 1.3964 -9.4293 -4.8244 26 1 2.8366 -9.0076 -6.7293 27 6 5.1232 -5.4292 -3.2638 28 1 2.9712 0.1260 1.0200 29 1 2.9709 0.8217 -0.6184 30 1 4.8826 0.5835 0.2460 31 1 7.3224 0.8362 0.3527 32 1 8.7959 -0.9772 -0.4164 33 1 7.8418 -3.0636 -1.2901 34 1 7.4302 -3.8353 -3.7577 35 1 6.6369 -2.3462 -3.1832 36 1 6.4900 -2.6434 -5.6816 37 1 4.8962 -2.5636 -4.8924 38 1 6.3630 -5.1286 -5.6592 39 1 5.0019 -4.4130 -6.5551 40 1 2.0912 -7.5901 -2.9163 41 1 4.3930 -5.8393 -2.5662 42 1 5.9681 -6.1118 -3.3549 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855260310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:31 Heat of formation + Delta-G solvation = 23.019561 kcal Electronic energy + Delta-G solvation = -25603.108898 eV Core-core repulsion = 22060.455106 eV Total energy + Delta-G solvation = -3542.653792 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.09283 -38.32606 -36.88084 -36.60151 -33.44655 -32.01725 -31.59401 -31.15517 -30.22921 -29.63586 -25.34103 -24.99305 -23.04713 -22.94730 -21.79392 -20.18303 -19.01598 -18.17865 -17.17131 -16.96569 -16.20421 -15.92811 -15.72370 -15.37550 -15.13346 -14.62346 -14.54494 -14.10542 -14.00497 -13.67352 -13.28736 -13.04520 -13.01831 -12.87129 -12.64696 -12.58375 -12.33616 -12.09043 -12.01190 -11.76913 -11.35244 -10.99306 -10.90288 -10.50850 -10.42083 -10.32921 -10.21339 -9.97645 -9.86117 -9.36509 -9.14706 -9.00832 -8.85761 -8.41829 -7.75207 -7.51181 -5.97041 -4.06312 0.85585 0.89312 1.05175 2.09290 2.47524 2.86079 3.08942 3.32133 3.39956 3.41953 3.48165 3.50205 3.77365 4.44684 4.57710 4.59306 4.66504 4.79412 4.83444 5.12992 5.15690 5.31992 5.35275 5.42273 5.52175 5.64270 5.71469 5.92357 6.00136 6.11390 6.19049 6.23592 6.32018 6.59477 6.62866 6.68084 6.85709 6.98558 7.13969 7.21437 7.26630 7.65261 7.88841 8.00812 8.21949 8.40118 8.78483 8.97852 9.59376 11.07917 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.011627 B = 0.004100 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.678765 B = 6827.312678 C = 8340.625617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C 0.221 3.779 3 C -0.050 4.050 4 S -0.002 6.002 5 C -0.059 4.059 6 C -0.141 4.141 7 C -0.087 4.087 8 C -0.129 4.129 9 C -0.070 4.070 10 C -0.093 4.093 11 C 0.541 3.459 12 O -0.513 6.513 13 N -0.595 5.595 14 C 0.106 3.894 15 C -0.133 4.133 16 C -0.110 4.110 17 C 0.040 3.960 18 H 0.030 0.970 19 C -0.522 4.522 20 H 0.058 0.942 21 C 0.063 3.937 22 N -0.878 5.878 23 Si 0.891 3.109 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.275 1.275 27 C 0.112 3.888 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.264 0.736 41 H 0.124 0.876 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.748 17.356 6.321 21.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.080 5.080 2 C -0.098 4.098 3 C -0.201 4.201 4 S 0.242 5.758 5 C -0.174 4.174 6 C -0.165 4.165 7 C -0.107 4.107 8 C -0.150 4.150 9 C -0.091 4.091 10 C -0.103 4.103 11 C 0.327 3.673 12 O -0.389 6.389 13 N -0.327 5.327 14 C -0.017 4.017 15 C -0.172 4.172 16 C -0.148 4.148 17 C 0.021 3.979 18 H 0.048 0.952 19 C -0.561 4.561 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.515 5.515 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.007 4.007 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.142 0.858 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.641 16.047 6.433 19.327 hybrid contribution 1.166 0.146 0.036 1.175 sum 9.807 16.192 6.469 20.005 Atomic orbital electron populations 1.81276 1.11975 1.07085 1.07689 1.27648 0.93601 0.94425 0.94154 1.21154 0.86510 1.04278 1.08116 1.87374 0.96208 1.14227 1.77967 1.21930 0.97204 0.96616 1.01642 1.21052 0.96163 0.96281 1.03013 1.21112 0.92850 0.98845 0.97903 1.21089 1.00118 0.93570 1.00229 1.21267 0.92955 0.97791 0.97054 1.19794 0.93559 0.94570 1.02396 1.18139 0.82319 0.84491 0.82400 1.90868 1.32144 1.57675 1.58254 1.48452 1.47943 1.21447 1.14882 1.21744 0.93140 0.95189 0.91658 1.21940 1.00277 0.99490 0.95450 1.21626 0.99986 0.93714 0.99474 1.18959 0.93211 0.95757 0.89953 0.95203 1.21068 1.26818 1.01437 1.06742 0.92398 1.25049 0.95722 0.98255 0.94938 1.69887 1.30392 1.36810 1.14455 0.86614 0.77798 0.84388 0.79330 1.20666 1.21217 1.19950 1.22347 0.98598 0.79480 1.00321 0.85004 0.85124 0.85372 0.85427 0.85311 0.84898 0.92032 0.90875 0.92232 0.92072 0.93214 0.93018 0.92628 0.85791 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.90 18.54 42.15 0.78 -5.12 16 2 C 0.22 2.57 15.44 -20.76 -0.32 2.25 16 3 C -0.05 -0.41 4.82 34.37 0.17 -0.25 16 4 S 0.00 -0.03 20.12 -107.50 -2.16 -2.20 16 5 C -0.06 -0.77 6.16 -38.46 -0.24 -1.01 16 6 C -0.14 -1.25 9.36 -39.40 -0.37 -1.62 16 7 C -0.09 -0.67 10.03 -39.55 -0.40 -1.07 16 8 C -0.13 -1.11 10.02 -39.61 -0.40 -1.50 16 9 C -0.07 -0.81 7.78 -39.20 -0.30 -1.11 16 10 C -0.09 -1.39 4.61 -104.79 -0.48 -1.88 16 11 C 0.54 10.69 6.53 -12.54 -0.08 10.61 16 12 O -0.51 -12.37 15.43 5.27 0.08 -12.29 16 13 N -0.60 -11.65 2.97 -174.05 -0.52 -12.17 16 14 C 0.11 1.61 5.58 -3.71 -0.02 1.59 16 15 C -0.13 -2.12 6.08 -26.61 -0.16 -2.28 16 16 C -0.11 -2.16 5.11 -26.69 -0.14 -2.30 16 17 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 18 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 19 C -0.52 -14.08 8.57 -34.44 -0.30 -14.38 16 20 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 22 N -0.88 -25.71 11.39 55.43 0.63 -25.08 16 23 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.11 2.67 5.41 -3.71 -0.02 2.65 16 28 H 0.13 0.69 7.75 -51.92 -0.40 0.29 16 29 H 0.13 0.66 7.75 -51.92 -0.40 0.26 16 30 H 0.13 0.71 5.90 -52.48 -0.31 0.40 16 31 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 33 H 0.13 1.41 7.77 -52.48 -0.41 1.00 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.95 5.39 -51.93 -0.28 0.67 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.12 3.48 5.11 -51.93 -0.27 3.21 16 42 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 361.17 15.07 5.44 5.44 Total: -1.00 -34.13 361.17 -9.54 -43.67 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -5.41 Total: -0.71 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -3.36 Total: -7.85 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.90 Total: -42.36 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.08 Total: -12.29 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.16 Total: -2.20 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.13 -9.54 -43.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855260310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.688 kcal (2) G-P(sol) polarization free energy of solvation -34.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds