Wall clock time and date at job start Tue Mar 31 2020 15:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00104 * 2 1 4 4 H 1.48502 * 109.46868 * 240.00093 * 3 2 1 5 5 H 1.48493 * 109.47208 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46879 * 120.00614 * 3 2 1 7 7 C 1.38814 * 119.99626 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99711 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00413 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00479 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.90477 * 336.25133 * 10 9 7 12 12 C 1.53779 * 113.61581 * 107.50306 * 10 9 7 13 13 C 1.53779 * 87.08402 * 139.98450 * 12 10 9 14 14 H 1.09000 * 113.61527 * 89.11480 * 13 12 10 15 15 C 1.53005 * 113.69064 * 220.00975 * 13 12 10 16 16 N 1.46499 * 109.46872 * 272.52979 * 15 13 12 17 17 C 1.34777 * 119.99733 * 179.97438 * 16 15 13 18 18 O 1.21685 * 120.00095 * 0.02562 * 17 16 15 19 19 C 1.46821 * 120.00039 * 180.02562 * 17 16 15 20 20 C 1.33919 * 123.03333 * 359.71607 * 19 17 16 21 21 S 1.70026 * 112.24254 * 179.84839 * 20 19 17 22 22 C 1.75809 * 93.00042 * 0.35140 * 21 20 19 23 23 C 1.39829 * 130.51495 * 179.81298 * 22 21 20 24 24 C 1.37492 * 120.29942 * 180.02562 * 23 22 21 25 25 C 1.38768 * 120.21858 * 359.97038 * 24 23 22 26 26 C 1.37278 * 120.32975 * 0.05182 * 25 24 23 27 27 C 1.39445 * 109.77663 * 359.80672 * 22 21 20 28 28 C 1.53784 * 113.61569 * 205.00086 * 10 9 7 29 29 H 0.97001 * 119.99577 * 359.97438 * 1 2 3 30 30 H 0.97009 * 119.99987 * 0.02562 * 9 7 2 31 31 H 1.09006 * 113.61307 * 25.43652 * 12 10 9 32 32 H 1.09007 * 113.61642 * 254.53409 * 12 10 9 33 33 H 1.08995 * 109.46809 * 32.53527 * 15 13 12 34 34 H 1.09006 * 109.46737 * 152.53023 * 15 13 12 35 35 H 0.96993 * 120.00253 * 0.02562 * 16 15 13 36 36 H 1.08002 * 123.87625 * 359.96936 * 20 19 17 37 37 H 1.07993 * 119.84810 * 359.96823 * 23 22 21 38 38 H 1.08000 * 119.89209 * 179.97438 * 24 23 22 39 39 H 1.07988 * 119.83189 * 180.02562 * 25 24 23 40 40 H 1.08003 * 119.85516 * 180.02562 * 26 25 24 41 41 H 1.09004 * 113.61451 * 105.47149 * 28 10 9 42 42 H 1.08994 * 113.61477 * 334.56451 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6962 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 3.0660 -3.5648 -0.4049 12 6 1.9989 -4.4022 1.3432 13 6 1.8478 -5.6977 0.5285 14 1 2.7984 -6.1635 0.2688 15 6 0.8452 -6.6866 1.1266 16 7 1.5265 -7.5445 2.0993 17 6 0.8366 -8.4973 2.7570 18 8 -0.3521 -8.6454 2.5426 19 6 1.5192 -9.3567 3.7323 20 6 2.8247 -9.2506 4.0110 21 16 3.3264 -10.3767 5.1819 22 6 1.7186 -11.0707 5.3371 23 6 1.2536 -12.1145 6.1429 24 6 -0.0677 -12.4918 6.0955 25 6 -0.9506 -11.8384 5.2474 26 6 -0.5127 -10.8116 4.4484 27 6 0.8355 -10.4108 4.4832 28 6 1.2599 -4.8288 -0.5960 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 1.1205 -4.1570 1.9403 32 1 2.9270 -4.3502 1.9126 33 1 0.0456 -6.1374 1.6236 34 1 0.4237 -7.3021 0.3317 35 1 2.4738 -7.4263 2.2705 36 1 3.4828 -8.5309 3.5469 37 1 1.9356 -12.6274 6.8048 38 1 -0.4197 -13.2992 6.7205 39 1 -1.9871 -12.1395 5.2155 40 1 -1.2065 -10.3081 3.7915 41 1 1.5915 -5.1213 -1.5924 42 1 0.1797 -4.7002 -0.5291 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086161970.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:26 Heat of formation + Delta-G solvation = 36.472585 kcal Electronic energy + Delta-G solvation = -23989.789299 eV Core-core repulsion = 20447.718874 eV Total energy + Delta-G solvation = -3542.070425 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.47581 -39.25856 -38.36303 -35.50746 -34.72251 -33.29186 -31.23900 -30.46252 -29.75399 -27.48417 -25.13231 -24.96220 -23.83296 -23.07945 -22.31443 -21.09082 -20.01844 -19.01760 -18.49702 -17.39101 -17.03019 -16.46539 -15.75247 -15.60629 -15.39429 -15.10353 -14.73647 -14.70169 -14.03420 -14.02992 -13.79260 -13.50295 -13.23069 -13.05765 -12.91163 -12.27160 -11.94817 -11.91200 -11.84829 -11.69131 -11.41578 -11.25003 -11.02829 -10.83692 -10.55468 -10.28007 -10.18280 -9.95943 -9.90394 -9.84978 -9.51034 -9.10863 -8.99044 -8.87895 -8.07740 -6.97864 -5.79293 -3.08322 0.19686 0.85206 1.04321 1.40475 1.51104 3.00394 3.05667 3.42220 3.46634 3.47898 3.48289 4.12992 4.44989 4.57086 4.61781 4.75202 4.83294 4.93975 4.97875 5.05169 5.13697 5.20033 5.28144 5.37840 5.45000 5.48027 5.71411 5.79631 5.82189 5.87948 5.91312 6.07274 6.07661 6.17511 6.22738 6.28912 6.33620 6.41297 6.54720 6.56772 6.80132 7.09018 7.37776 7.67126 8.08607 8.39204 9.50104 10.08329 10.42487 11.42951 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.023792 B = 0.001968 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.584892 B =14227.450346 C =14625.767397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.712 5.712 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.161 4.161 13 C -0.128 4.128 14 H 0.088 0.912 15 C 0.133 3.867 16 N -0.718 5.718 17 C 0.572 3.428 18 O -0.535 6.535 19 C -0.130 4.130 20 C -0.190 4.190 21 S 0.173 5.827 22 C -0.160 4.160 23 C -0.086 4.086 24 C -0.103 4.103 25 C -0.119 4.119 26 C -0.066 4.066 27 C -0.042 4.042 28 C -0.142 4.142 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.398 0.602 36 H 0.174 0.826 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.145 0.855 41 H 0.062 0.938 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.414 -27.697 11.370 30.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.202 4.202 13 C -0.147 4.147 14 H 0.106 0.894 15 C 0.010 3.990 16 N -0.369 5.369 17 C 0.357 3.643 18 O -0.413 6.413 19 C -0.148 4.148 20 C -0.327 4.327 21 S 0.441 5.559 22 C -0.275 4.275 23 C -0.108 4.108 24 C -0.124 4.124 25 C -0.139 4.139 26 C -0.086 4.086 27 C -0.049 4.049 28 C -0.182 4.182 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.232 0.768 36 H 0.191 0.809 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.163 0.837 41 H 0.080 0.920 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.113 -27.820 11.823 30.840 hybrid contribution -0.623 1.400 -0.581 1.639 sum 5.489 -26.420 11.242 29.232 Atomic orbital electron populations 1.69653 1.05132 1.25883 1.57306 1.24780 0.95539 0.97812 1.02810 0.86257 0.78529 0.83492 0.77835 1.21239 1.21674 1.21249 1.19253 0.91023 0.84258 1.43124 0.91163 1.42404 1.05767 0.99862 1.86988 1.21511 0.95310 0.85066 0.92723 0.90680 1.23964 1.01368 0.94912 1.00004 1.22652 0.98359 0.94395 0.99329 0.89407 1.21487 0.95356 0.91466 0.90694 1.45916 1.13162 1.35050 1.42738 1.17509 0.86507 0.80003 0.80330 1.90768 1.14817 1.70182 1.65530 1.19682 0.93092 1.00034 1.01948 1.25059 0.99180 1.04927 1.03570 1.82986 1.06832 1.28223 1.37900 1.22780 0.97913 1.03031 1.03808 1.20417 0.96200 0.95624 0.98555 1.21084 0.92768 0.99737 0.98778 1.21101 1.00162 0.96200 0.96435 1.21302 0.93730 0.95657 0.97885 1.18744 0.94538 0.95212 0.96439 1.23450 1.01090 0.96956 0.96660 0.93380 0.78044 0.90300 0.92816 0.90942 0.91490 0.76755 0.80859 0.85445 0.85143 0.85157 0.83749 0.91960 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.25 -6.76 9.97 -15.06 -0.15 -6.91 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.71 -17.68 5.40 -52.64 -0.28 -17.97 16 10 C 0.17 3.17 4.48 -67.12 -0.30 2.87 16 11 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 12 C -0.16 -2.62 7.43 -25.92 -0.19 -2.81 16 13 C -0.13 -1.67 3.75 -89.80 -0.34 -2.01 16 14 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 15 C 0.13 1.73 5.51 -4.04 -0.02 1.70 16 16 N -0.72 -8.26 5.52 -61.57 -0.34 -8.60 16 17 C 0.57 7.68 7.77 -12.79 -0.10 7.58 16 18 O -0.53 -8.88 14.89 5.20 0.08 -8.80 16 19 C -0.13 -1.49 5.95 -104.68 -0.62 -2.11 16 20 C -0.19 -1.64 10.20 29.21 0.30 -1.34 16 21 S 0.17 1.32 22.98 -107.50 -2.47 -1.15 16 22 C -0.16 -1.56 6.47 -38.54 -0.25 -1.81 16 23 C -0.09 -0.68 10.06 -39.26 -0.40 -1.08 16 24 C -0.10 -0.76 10.03 -39.66 -0.40 -1.15 16 25 C -0.12 -1.03 10.01 -39.73 -0.40 -1.42 16 26 C -0.07 -0.75 9.59 -39.00 -0.37 -1.12 16 27 C -0.04 -0.49 6.03 -105.25 -0.63 -1.13 16 28 C -0.14 -2.22 7.39 -25.91 -0.19 -2.41 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.39 10.21 7.92 -40.82 -0.32 9.89 16 31 H 0.08 1.43 7.90 -51.93 -0.41 1.02 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.08 7.85 -51.93 -0.41 0.67 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.40 3.50 6.87 -40.82 -0.28 3.22 16 36 H 0.17 1.01 6.87 -52.49 -0.36 0.65 16 37 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 38 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 39 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.14 1.80 6.45 -52.48 -0.34 1.46 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.08 1.34 8.08 -51.93 -0.42 0.93 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -32.95 365.78 -11.43 -44.38 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -5.47 Total: 10.41 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -4.16 Total: -13.63 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.10 Total: -53.99 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.08 Total: -8.80 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.47 Total: -1.15 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.95 -11.43 -44.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086161970.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.855 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds