Wall clock time and date at job start Tue Mar 31 2020 15:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99879 * 2 1 4 4 H 1.48499 * 109.47146 * 90.00078 * 3 2 1 5 5 H 1.48509 * 109.47175 * 210.00386 * 3 2 1 6 6 H 1.48501 * 109.47260 * 330.00081 * 3 2 1 7 7 C 1.38805 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00150 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00261 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00123 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47049 * 173.66869 * 10 9 7 12 12 H 1.08999 * 109.87190 * 47.36063 * 11 10 9 13 13 C 1.54321 * 109.88526 * 168.37858 * 11 10 9 14 14 C 1.55153 * 102.94297 * 141.61219 * 13 11 10 15 15 C 1.54907 * 101.58372 * 324.49534 * 14 13 11 16 16 N 1.47024 * 109.88369 * 286.18929 * 11 10 9 17 17 C 1.34777 * 125.65100 * 61.59198 * 16 11 10 18 18 O 1.21594 * 119.99820 * 2.81777 * 17 16 11 19 19 C 1.47491 * 120.00115 * 182.81398 * 17 16 11 20 20 C 1.39086 * 120.01766 * 29.68426 * 19 17 16 21 21 C 1.38315 * 120.01565 * 180.02562 * 20 19 17 22 22 C 1.37387 * 120.67380 * 359.95691 * 21 20 19 23 23 C 1.41060 * 120.68362 * 0.02562 * 22 21 20 24 24 C 1.45469 * 129.27848 * 179.97438 * 23 22 21 25 25 C 1.31763 * 114.90773 * 180.02562 * 24 23 22 26 26 S 1.75292 * 111.40850 * 0.02562 * 25 24 23 27 27 C 1.39733 * 118.92837 * 359.74487 * 23 22 21 28 28 H 0.97002 * 120.00309 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99639 * 0.02562 * 9 7 2 30 30 H 1.08990 * 109.47579 * 293.67037 * 10 9 7 31 31 H 1.08999 * 109.47211 * 53.67208 * 10 9 7 32 32 H 1.08999 * 110.72098 * 259.97707 * 13 11 10 33 33 H 1.09003 * 110.71891 * 23.24717 * 13 11 10 34 34 H 1.08997 * 111.00829 * 82.57809 * 14 13 11 35 35 H 1.09011 * 111.00508 * 206.38703 * 14 13 11 36 36 H 1.09001 * 110.36787 * 155.84441 * 15 14 13 37 37 H 1.08996 * 110.36790 * 278.17407 * 15 14 13 38 38 H 1.07995 * 119.99003 * 359.97438 * 20 19 17 39 39 H 1.08009 * 119.66308 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.66313 * 180.02562 * 22 21 20 41 41 H 1.08007 * 122.54610 * 0.05077 * 24 23 22 42 42 H 1.07999 * 124.29446 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5477 1.4402 -0.7002 6 1 1.4476 2.6527 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0716 -4.8153 0.1576 12 1 0.2336 -4.6852 -0.5271 13 6 1.7829 -6.1539 -0.1317 14 6 1.1649 -7.1107 0.9217 15 6 0.9807 -6.1627 2.1329 16 7 0.5847 -4.8705 1.5438 17 6 -0.1079 -3.9001 2.1723 18 8 -0.4238 -2.8917 1.5708 19 6 -0.4829 -4.0614 3.5896 20 6 0.3192 -4.8149 4.4401 21 6 -0.0327 -4.9666 5.7691 22 6 -1.1712 -4.3782 6.2642 23 6 -2.0055 -3.6076 5.4276 24 6 -3.2403 -2.9092 5.7494 25 6 -3.7950 -2.2691 4.7401 26 16 -2.8564 -2.4545 3.2713 27 6 -1.6530 -3.4464 4.0851 28 1 -0.4851 0.8400 -0.0004 29 1 0.3555 -2.3880 -0.0005 30 1 2.5963 -3.7647 -0.9432 31 1 2.7676 -3.6673 0.8257 32 1 1.5614 -6.4978 -1.1420 33 1 2.8586 -6.0591 0.0174 34 1 0.2056 -7.5000 0.5808 35 1 1.8508 -7.9233 1.1616 36 1 0.1960 -6.5359 2.7909 37 1 1.9180 -6.0591 2.6795 38 1 1.2165 -5.2824 4.0625 39 1 0.5941 -5.5533 6.4245 40 1 -1.4303 -4.5070 7.3048 41 1 -3.6696 -2.9146 6.7404 42 1 -4.7120 -1.7027 4.8088 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753601833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:43 Heat of formation + Delta-G solvation = 56.906514 kcal Electronic energy + Delta-G solvation = -26323.319553 eV Core-core repulsion = 22782.135209 eV Total energy + Delta-G solvation = -3541.184343 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.26846 -38.91003 -36.91308 -35.14944 -34.12839 -31.87508 -31.15993 -30.54316 -29.30918 -28.55583 -25.12489 -24.25183 -23.51352 -22.59455 -21.46116 -21.03687 -20.56453 -18.94126 -17.51938 -17.09992 -16.39953 -16.32104 -15.80155 -15.07679 -14.81723 -14.52069 -14.25788 -14.01211 -13.63576 -13.47914 -13.41102 -13.16648 -12.90151 -12.78473 -12.43150 -12.28602 -11.82189 -11.64211 -11.51770 -11.34970 -11.26339 -11.10025 -10.90368 -10.66372 -10.57584 -10.43643 -10.31981 -9.89535 -9.55170 -9.45021 -8.91810 -8.62779 -8.47887 -8.10641 -7.50376 -6.54242 -5.41914 -2.69798 0.70714 1.12154 1.78456 2.25132 2.31836 3.29614 3.33940 3.57907 3.62095 3.63879 3.91078 4.55124 4.58327 4.62886 4.79938 4.85797 4.91970 4.99074 5.16894 5.21083 5.34854 5.39153 5.46804 5.57707 5.63746 5.72201 5.76619 5.83728 5.88233 5.93609 6.00011 6.02009 6.10273 6.23120 6.27525 6.33625 6.46043 6.50796 6.67229 6.79370 6.86317 7.03761 7.91958 7.96982 8.65664 8.86737 9.88160 10.53703 10.94992 11.78266 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.009248 B = 0.005663 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.012896 B = 4943.329916 C = 7021.154028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.008 4.008 3 Si 0.894 3.106 4 H -0.294 1.294 5 H -0.285 1.285 6 H -0.293 1.293 7 C -0.239 4.239 8 H 0.060 0.940 9 N -0.722 5.722 10 C 0.145 3.855 11 C 0.131 3.869 12 H 0.074 0.926 13 C -0.124 4.124 14 C -0.133 4.133 15 C 0.097 3.903 16 N -0.611 5.611 17 C 0.546 3.454 18 O -0.445 6.445 19 C -0.077 4.077 20 C -0.084 4.084 21 C -0.131 4.131 22 C -0.065 4.065 23 C -0.087 4.087 24 C -0.130 4.130 25 C -0.216 4.216 26 S 0.176 5.824 27 C -0.105 4.105 28 H 0.248 0.752 29 H 0.401 0.599 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.140 0.860 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.140 0.860 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.833 -17.454 11.596 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.205 4.205 3 Si 0.726 3.274 4 H -0.222 1.222 5 H -0.211 1.211 6 H -0.220 1.220 7 C -0.371 4.371 8 H 0.078 0.922 9 N -0.375 5.375 10 C 0.016 3.984 11 C 0.028 3.972 12 H 0.092 0.908 13 C -0.162 4.162 14 C -0.171 4.171 15 C -0.027 4.027 16 N -0.349 5.349 17 C 0.333 3.667 18 O -0.314 6.314 19 C -0.084 4.084 20 C -0.106 4.106 21 C -0.151 4.151 22 C -0.085 4.085 23 C -0.096 4.096 24 C -0.161 4.161 25 C -0.350 4.350 26 S 0.443 5.557 27 C -0.223 4.223 28 H 0.059 0.941 29 H 0.244 0.756 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.157 0.843 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.158 0.842 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.287 -16.060 9.788 19.290 hybrid contribution 0.591 0.563 1.666 1.855 sum -3.696 -15.498 11.454 19.622 Atomic orbital electron populations 1.69746 1.04624 1.24483 1.57042 1.24665 0.95349 0.96954 1.03554 0.86390 0.78683 0.85049 0.77262 1.22169 1.21106 1.21984 1.19111 0.90432 0.84737 1.42814 0.92243 1.42951 1.07321 0.98778 1.88457 1.20996 0.93230 0.86719 0.97474 1.21886 0.97224 0.95492 0.82581 0.90763 1.22635 1.00476 0.93666 0.99467 1.22786 1.01593 0.97321 0.95436 1.22497 0.99741 0.84047 0.96389 1.48281 1.56184 1.16588 1.13811 1.17883 0.79680 0.83173 0.85973 1.90942 1.50150 1.25560 1.64785 1.19340 0.94763 0.99854 0.94492 1.21588 0.98938 0.96518 0.93519 1.20812 0.97412 1.01530 0.95387 1.21014 0.93536 0.95173 0.98784 1.19276 0.96560 1.01372 0.92363 1.20770 0.95076 1.00090 1.00115 1.25484 1.05115 1.05502 0.98904 1.85408 1.13320 1.49543 1.07389 1.22824 0.99660 1.02529 0.97238 0.94148 0.75567 0.96512 0.96547 0.90158 0.90354 0.90733 0.90104 0.90652 0.91593 0.84287 0.85218 0.85587 0.84233 0.81775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.76 13.06 55.49 0.72 -29.04 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.89 24.10 29.55 -169.99 -5.02 19.08 16 4 H -0.29 -7.94 7.11 56.52 0.40 -7.54 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.29 -7.89 7.11 56.52 0.40 -7.49 16 7 C -0.24 -7.32 9.99 -15.06 -0.15 -7.47 16 8 H 0.06 1.77 7.83 -52.48 -0.41 1.36 16 9 N -0.72 -20.21 4.37 -59.92 -0.26 -20.47 16 10 C 0.15 3.17 5.62 -4.04 -0.02 3.15 16 11 C 0.13 2.27 3.06 -66.95 -0.20 2.07 16 12 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 13 C -0.12 -1.47 6.46 -24.90 -0.16 -1.63 16 14 C -0.13 -1.27 7.08 -24.59 -0.17 -1.44 16 15 C 0.10 1.11 5.04 -2.53 -0.01 1.10 16 16 N -0.61 -10.31 3.07 -164.25 -0.50 -10.82 16 17 C 0.55 11.11 7.31 -12.49 -0.09 11.02 16 18 O -0.44 -11.30 11.92 5.28 0.06 -11.24 16 19 C -0.08 -1.34 5.62 -104.70 -0.59 -1.92 16 20 C -0.08 -1.14 8.00 -39.24 -0.31 -1.45 16 21 C -0.13 -1.46 9.98 -39.86 -0.40 -1.86 16 22 C -0.07 -0.76 10.08 -38.82 -0.39 -1.15 16 23 C -0.09 -1.26 6.04 -105.39 -0.64 -1.89 16 24 C -0.13 -1.65 10.39 -38.59 -0.40 -2.05 16 25 C -0.22 -2.90 11.02 28.85 0.32 -2.58 16 26 S 0.18 3.13 21.89 -107.50 -2.35 0.78 16 27 C -0.11 -1.84 6.29 -37.91 -0.24 -2.08 16 28 H 0.25 7.87 8.31 -40.82 -0.34 7.53 16 29 H 0.40 11.97 4.76 -40.82 -0.19 11.77 16 30 H 0.02 0.37 8.11 -51.93 -0.42 -0.05 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.89 7.85 -51.93 -0.41 0.48 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.08 0.79 6.83 -51.93 -0.35 0.43 16 37 H 0.07 0.68 6.92 -51.93 -0.36 0.32 16 38 H 0.14 1.60 4.96 -52.49 -0.26 1.34 16 39 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 41 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 42 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 351.14 15.07 5.29 5.29 Total: -1.00 -37.68 351.14 -10.97 -48.66 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -5.35 Total: 6.30 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -3.56 Total: -8.55 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.04 Total: -60.32 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.06 Total: -11.24 kcal Atomic # 14 Polarization: 24.10 SS G_CDS: -5.02 Total: 19.08 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -2.35 Total: 0.78 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -37.68 -10.97 -48.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753601833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.563 kcal (2) G-P(sol) polarization free energy of solvation -37.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds