Wall clock time and date at job start Tue Mar 31 2020 15:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99879 * 2 1 4 4 H 1.48499 * 109.47146 * 90.00078 * 3 2 1 5 5 H 1.48509 * 109.47175 * 210.00386 * 3 2 1 6 6 H 1.48501 * 109.47260 * 330.00081 * 3 2 1 7 7 C 1.38805 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00150 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00261 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00123 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47049 * 173.66869 * 10 9 7 12 12 H 1.08999 * 109.87190 * 47.36063 * 11 10 9 13 13 C 1.54321 * 109.88526 * 168.37858 * 11 10 9 14 14 C 1.55153 * 102.94297 * 141.61219 * 13 11 10 15 15 C 1.54907 * 101.58372 * 324.49534 * 14 13 11 16 16 N 1.47024 * 109.88369 * 286.18929 * 11 10 9 17 17 C 1.34777 * 125.65100 * 61.59198 * 16 11 10 18 18 O 1.21594 * 119.99820 * 2.81777 * 17 16 11 19 19 C 1.47491 * 120.00115 * 182.81398 * 17 16 11 20 20 C 1.39086 * 120.01766 * 29.68426 * 19 17 16 21 21 C 1.38315 * 120.01565 * 180.02562 * 20 19 17 22 22 C 1.37387 * 120.67380 * 359.95691 * 21 20 19 23 23 C 1.41060 * 120.68362 * 0.02562 * 22 21 20 24 24 C 1.45469 * 129.27848 * 179.97438 * 23 22 21 25 25 C 1.31763 * 114.90773 * 180.02562 * 24 23 22 26 26 S 1.75292 * 111.40850 * 0.02562 * 25 24 23 27 27 C 1.39733 * 118.92837 * 359.74487 * 23 22 21 28 28 H 0.97002 * 120.00309 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99639 * 0.02562 * 9 7 2 30 30 H 1.08990 * 109.47579 * 293.67037 * 10 9 7 31 31 H 1.08999 * 109.47211 * 53.67208 * 10 9 7 32 32 H 1.08999 * 110.72098 * 259.97707 * 13 11 10 33 33 H 1.09003 * 110.71891 * 23.24717 * 13 11 10 34 34 H 1.08997 * 111.00829 * 82.57809 * 14 13 11 35 35 H 1.09011 * 111.00508 * 206.38703 * 14 13 11 36 36 H 1.09001 * 110.36787 * 155.84441 * 15 14 13 37 37 H 1.08996 * 110.36790 * 278.17407 * 15 14 13 38 38 H 1.07995 * 119.99003 * 359.97438 * 20 19 17 39 39 H 1.08009 * 119.66308 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.66313 * 180.02562 * 22 21 20 41 41 H 1.08007 * 122.54610 * 0.05077 * 24 23 22 42 42 H 1.07999 * 124.29446 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5477 1.4402 -0.7002 6 1 1.4476 2.6527 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0716 -4.8153 0.1576 12 1 0.2336 -4.6852 -0.5271 13 6 1.7829 -6.1539 -0.1317 14 6 1.1649 -7.1107 0.9217 15 6 0.9807 -6.1627 2.1329 16 7 0.5847 -4.8705 1.5438 17 6 -0.1079 -3.9001 2.1723 18 8 -0.4238 -2.8917 1.5708 19 6 -0.4829 -4.0614 3.5896 20 6 0.3192 -4.8149 4.4401 21 6 -0.0327 -4.9666 5.7691 22 6 -1.1712 -4.3782 6.2642 23 6 -2.0055 -3.6076 5.4276 24 6 -3.2403 -2.9092 5.7494 25 6 -3.7950 -2.2691 4.7401 26 16 -2.8564 -2.4545 3.2713 27 6 -1.6530 -3.4464 4.0851 28 1 -0.4851 0.8400 -0.0004 29 1 0.3555 -2.3880 -0.0005 30 1 2.5963 -3.7647 -0.9432 31 1 2.7676 -3.6673 0.8257 32 1 1.5614 -6.4978 -1.1420 33 1 2.8586 -6.0591 0.0174 34 1 0.2056 -7.5000 0.5808 35 1 1.8508 -7.9233 1.1616 36 1 0.1960 -6.5359 2.7909 37 1 1.9180 -6.0591 2.6795 38 1 1.2165 -5.2824 4.0625 39 1 0.5941 -5.5533 6.4245 40 1 -1.4303 -4.5070 7.3048 41 1 -3.6696 -2.9146 6.7404 42 1 -4.7120 -1.7027 4.8088 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753601833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:42 Heat of formation + Delta-G solvation = 31.668379 kcal Electronic energy + Delta-G solvation = -26324.413960 eV Core-core repulsion = 22782.135209 eV Total energy + Delta-G solvation = -3542.278751 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.51915 -40.02721 -38.28014 -36.43166 -35.91072 -33.45914 -32.76952 -31.64852 -30.57351 -29.98067 -26.75228 -25.64556 -24.68376 -24.17927 -22.86860 -22.07877 -21.59875 -20.31703 -19.19485 -18.57773 -17.78291 -17.51936 -17.00897 -16.62102 -16.18823 -15.97711 -15.52415 -15.28295 -15.11998 -14.85644 -14.69767 -14.53662 -14.37414 -14.02073 -13.72433 -13.37335 -13.30820 -13.11143 -12.94170 -12.74250 -12.66019 -12.44029 -12.28300 -12.26205 -12.00905 -11.79683 -11.60871 -11.49755 -11.47001 -10.90617 -10.68615 -10.44538 -9.55772 -9.51602 -8.79626 -8.73883 -7.79035 -5.07726 -0.33502 0.01303 0.61603 1.19937 1.24590 1.38395 1.42632 1.50534 2.04324 2.07106 2.57642 2.76999 3.45973 3.49212 3.60775 3.68874 3.79454 3.92656 4.01298 4.13316 4.27616 4.29220 4.40147 4.43355 4.45941 4.60024 4.65978 4.75234 4.81051 4.84244 4.89814 4.97353 4.99471 5.01265 5.15484 5.17054 5.25007 5.36501 5.40634 5.46869 5.48122 5.61217 5.86162 6.36407 6.64635 7.31179 7.51827 8.35397 8.63824 9.41569 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.009248 B = 0.005663 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.012896 B = 4943.329916 C = 7021.154028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.075 4.075 3 Si 0.966 3.034 4 H -0.294 1.294 5 H -0.267 1.267 6 H -0.294 1.294 7 C -0.248 4.248 8 H 0.063 0.937 9 N -0.739 5.739 10 C 0.143 3.857 11 C 0.131 3.869 12 H 0.043 0.957 13 C -0.113 4.113 14 C -0.118 4.118 15 C 0.087 3.913 16 N -0.612 5.612 17 C 0.533 3.467 18 O -0.513 6.513 19 C -0.116 4.116 20 C -0.074 4.074 21 C -0.121 4.121 22 C -0.051 4.051 23 C -0.101 4.101 24 C -0.116 4.116 25 C -0.210 4.210 26 S 0.054 5.946 27 C -0.125 4.125 28 H 0.241 0.759 29 H 0.390 0.610 30 H 0.024 0.976 31 H 0.012 0.988 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.159 0.841 39 H 0.179 0.821 40 H 0.172 0.828 41 H 0.185 0.815 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.000 -20.576 15.146 25.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.268 4.268 3 Si 0.795 3.205 4 H -0.222 1.222 5 H -0.192 1.192 6 H -0.220 1.220 7 C -0.380 4.380 8 H 0.081 0.919 9 N -0.390 5.390 10 C 0.015 3.985 11 C 0.027 3.973 12 H 0.061 0.939 13 C -0.151 4.151 14 C -0.156 4.156 15 C -0.034 4.034 16 N -0.347 5.347 17 C 0.321 3.679 18 O -0.388 6.388 19 C -0.124 4.124 20 C -0.095 4.095 21 C -0.141 4.141 22 C -0.071 4.071 23 C -0.110 4.110 24 C -0.145 4.145 25 C -0.343 4.343 26 S 0.319 5.681 27 C -0.242 4.242 28 H 0.050 0.950 29 H 0.231 0.769 30 H 0.042 0.958 31 H 0.030 0.970 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.140 0.860 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.176 0.824 39 H 0.196 0.804 40 H 0.189 0.811 41 H 0.202 0.798 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -2.396 -19.278 13.358 23.575 hybrid contribution 0.079 1.386 0.669 1.541 sum -2.317 -17.892 14.027 22.853 Atomic orbital electron populations 1.69984 1.06370 1.24693 1.58705 1.25548 0.96297 1.00684 1.04267 0.85262 0.77895 0.80279 0.77061 1.22161 1.19208 1.22043 1.19535 0.90745 0.86187 1.41551 0.91888 1.43233 1.07233 1.00226 1.88338 1.21200 0.93948 0.86210 0.97178 1.21852 0.95570 0.96916 0.82936 0.93899 1.22630 1.00574 0.90603 1.01321 1.22814 1.02572 0.97130 0.93050 1.22891 1.00994 0.81808 0.97702 1.48418 1.54857 1.17818 1.13622 1.18589 0.79112 0.82862 0.87327 1.90895 1.52966 1.28446 1.66492 1.19366 0.96495 1.03027 0.93550 1.21919 0.98459 0.94857 0.94237 1.21371 0.97435 1.00697 0.94567 1.21596 0.92430 0.92710 1.00329 1.19803 0.97717 1.02092 0.91387 1.21246 0.93892 0.97949 1.01418 1.25605 1.05633 1.06788 0.96279 1.85720 1.17094 1.52627 1.12667 1.22959 0.99763 1.03040 0.98410 0.94975 0.76895 0.95815 0.96997 0.88591 0.89092 0.90460 0.85998 0.89244 0.89505 0.82380 0.80351 0.81079 0.79753 0.79136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -65.93 13.06 21.65 0.28 -65.65 16 2 C -0.07 -4.87 5.50 84.86 0.47 -4.41 16 3 Si 0.97 51.60 29.55 68.60 2.03 53.62 16 4 H -0.29 -15.57 7.11 99.48 0.71 -14.86 16 5 H -0.27 -13.33 7.11 99.48 0.71 -12.63 16 6 H -0.29 -15.58 7.11 99.48 0.71 -14.87 16 7 C -0.25 -15.82 9.99 84.03 0.84 -14.98 16 8 H 0.06 3.86 7.83 -2.91 -0.02 3.83 16 9 N -0.74 -43.90 4.37 -343.47 -1.50 -45.40 16 10 C 0.14 6.47 5.62 86.38 0.49 6.96 16 11 C 0.13 4.69 3.06 45.34 0.14 4.83 16 12 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 13 C -0.11 -2.44 6.46 31.78 0.21 -2.24 16 14 C -0.12 -1.82 7.08 31.98 0.23 -1.59 16 15 C 0.09 1.80 5.04 86.85 0.44 2.23 16 16 N -0.61 -21.13 3.07 -791.82 -2.43 -23.55 16 17 C 0.53 23.16 7.31 86.68 0.63 23.79 16 18 O -0.51 -28.75 11.92 -4.01 -0.05 -28.80 16 19 C -0.12 -4.17 5.62 -19.92 -0.11 -4.28 16 20 C -0.07 -1.82 8.00 22.49 0.18 -1.64 16 21 C -0.12 -2.09 9.98 22.09 0.22 -1.87 16 22 C -0.05 -0.96 10.08 22.76 0.23 -0.73 16 23 C -0.10 -2.76 6.04 -20.36 -0.12 -2.88 16 24 C -0.12 -2.70 10.39 23.40 0.24 -2.46 16 25 C -0.21 -5.73 11.02 67.08 0.74 -4.99 16 26 S 0.05 2.12 21.89 -56.49 -1.24 0.88 16 27 C -0.12 -4.56 6.29 23.35 0.15 -4.41 16 28 H 0.24 16.31 8.31 -92.71 -0.77 15.54 16 29 H 0.39 25.23 4.76 -92.71 -0.44 24.79 16 30 H 0.02 1.05 8.11 -2.39 -0.02 1.03 16 31 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.09 1.78 7.85 -2.39 -0.02 1.76 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 35 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.09 1.62 6.83 -2.39 -0.02 1.60 16 37 H 0.09 1.46 6.92 -2.39 -0.02 1.44 16 38 H 0.16 3.11 4.96 -2.91 -0.01 3.10 16 39 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.19 2.61 8.06 -2.91 -0.02 2.59 16 42 H 0.19 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -93.66 351.14 2.67 -90.99 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.61 Total: 26.57 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 4.96 Total: -8.67 kcal Atomic # 7 Polarization: -130.96 SS G_CDS: -3.65 Total: -134.60 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.05 Total: -28.80 kcal Atomic # 14 Polarization: 51.60 SS G_CDS: 2.03 Total: 53.62 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -1.24 Total: 0.88 kcal Total: -93.66 2.67 -90.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753601833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.662 kcal (2) G-P(sol) polarization free energy of solvation -93.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds