Wall clock time and date at job start Tue Mar 31 2020 16:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30950 * 123.02680 * 2 1 4 4 C 1.29374 * 117.45938 * 179.97438 * 3 2 1 5 5 C 1.50702 * 124.70905 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47136 * 119.99837 * 5 4 3 7 7 C 1.52998 * 109.46985 * 239.99732 * 5 4 3 8 8 S 1.70923 * 110.58455 * 359.97438 * 4 3 2 9 9 C 1.36706 * 123.03707 * 179.97438 * 2 1 3 10 10 C 1.46625 * 126.17201 * 0.06547 * 9 2 1 11 11 O 1.21704 * 120.00196 * 359.97438 * 10 9 2 12 12 N 1.34779 * 119.99776 * 179.97438 * 10 9 2 13 13 C 1.38984 * 120.00002 * 175.79914 * 12 10 9 14 14 C 1.38688 * 120.28958 * 34.57505 * 13 12 10 15 15 C 1.38195 * 120.03419 * 180.02562 * 14 13 12 16 16 C 1.38883 * 120.61857 * 0.02619 * 15 14 13 17 17 C 1.36457 * 120.59032 * 0.02562 * 16 15 14 18 18 C 1.40741 * 119.93775 * 359.67668 * 17 16 15 19 19 C 1.41056 * 120.30286 * 180.29860 * 18 17 16 20 20 H 1.07995 * 119.99878 * 215.00610 * 19 18 17 21 21 C 1.39954 * 119.99492 * 35.00854 * 19 18 17 22 22 N 1.30852 * 120.00409 * 355.63897 * 21 19 18 23 23 Si 1.86804 * 119.99593 * 175.64236 * 21 19 18 24 24 H 1.48494 * 109.47375 * 60.00032 * 23 21 19 25 25 H 1.48506 * 109.47130 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47020 * 299.99436 * 23 21 19 27 27 H 1.09006 * 109.46742 * 90.03403 * 1 2 3 28 28 H 1.09008 * 109.46819 * 210.02749 * 1 2 3 29 29 H 1.08998 * 109.47791 * 330.03470 * 1 2 3 30 30 H 1.08997 * 109.46928 * 359.97438 * 5 4 3 31 31 H 1.08997 * 109.47472 * 60.00014 * 6 5 4 32 32 H 1.09004 * 109.46987 * 180.02562 * 6 5 4 33 33 H 1.09008 * 109.46924 * 299.99806 * 6 5 4 34 34 H 1.08997 * 109.47286 * 60.00057 * 7 5 4 35 35 H 1.09004 * 109.46861 * 179.97438 * 7 5 4 36 36 H 1.08997 * 109.47113 * 299.99673 * 7 5 4 37 37 H 0.97000 * 120.00189 * 355.79614 * 12 10 9 38 38 H 1.07998 * 119.98428 * 0.03010 * 14 13 12 39 39 H 1.08001 * 119.69527 * 180.02562 * 15 14 13 40 40 H 1.08007 * 119.70758 * 179.97438 * 16 15 14 41 41 H 1.07996 * 120.02918 * 179.97438 * 17 16 15 42 42 H 0.97001 * 119.99713 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2207 1.0979 0.0000 4 6 3.5083 0.9724 0.0005 5 6 4.4826 2.1221 0.0000 6 6 5.3621 2.0459 1.2496 7 6 5.3630 2.0440 -1.2488 8 16 3.9512 -0.6785 0.0018 9 6 2.2523 -1.1460 0.0005 10 6 1.7318 -2.5168 -0.0002 11 8 0.5305 -2.7116 -0.0009 12 7 2.5839 -3.5611 -0.0001 13 6 2.0931 -4.8584 0.0874 14 6 0.8870 -5.1918 -0.5107 15 6 0.4036 -6.4833 -0.4200 16 6 1.1148 -7.4581 0.2676 17 6 2.3036 -7.1577 0.8664 18 6 2.8215 -5.8517 0.7838 19 6 4.0527 -5.5342 1.3946 20 1 4.2018 -4.5592 1.8344 21 6 5.0810 -6.4829 1.4305 22 7 4.8725 -7.6915 0.9745 23 14 6.7513 -6.0236 2.1297 24 1 6.5974 -5.6075 3.5468 25 1 7.6593 -7.1963 2.0534 26 1 7.3254 -4.9019 1.3438 27 1 -0.3633 -0.0006 -1.0277 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3634 0.8902 0.5133 30 1 3.9334 3.0637 -0.0012 31 1 5.9113 1.1043 1.2505 32 1 6.0665 2.8778 1.2495 33 1 4.7348 2.1015 2.1394 34 1 4.7365 2.0984 -2.1390 35 1 6.0674 2.8759 -1.2494 36 1 5.9122 1.1025 -1.2479 37 1 3.5397 -3.4073 -0.0611 38 1 0.3252 -4.4418 -1.0476 39 1 -0.5360 -6.7370 -0.8881 40 1 0.7231 -8.4627 0.3297 41 1 2.8490 -7.9227 1.3991 42 1 5.5852 -8.3491 0.9998 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558189830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:16 Heat of formation + Delta-G solvation = 13.708114 kcal Electronic energy + Delta-G solvation = -25223.684659 eV Core-core repulsion = 21680.627093 eV Total energy + Delta-G solvation = -3543.057567 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.25823 -39.26290 -37.21498 -35.82623 -33.90102 -33.66558 -31.22160 -29.68531 -29.19536 -27.52229 -27.48317 -25.29358 -25.02793 -22.45232 -21.19549 -21.05693 -20.06551 -19.15344 -17.73147 -17.45144 -16.87088 -15.83535 -15.40060 -15.29617 -14.91821 -14.64126 -14.31466 -14.12854 -13.82877 -13.54193 -13.40702 -13.02063 -12.70103 -12.65829 -12.50400 -12.36551 -12.20415 -11.82199 -11.80795 -11.49292 -11.47027 -11.28189 -11.21014 -11.10214 -11.00714 -10.52014 -10.16899 -9.84817 -9.81754 -9.44262 -9.38623 -9.25015 -8.93160 -8.65409 -7.35301 -7.01609 -6.67305 -4.49797 0.29568 1.21187 1.65283 2.44989 2.72036 2.92513 3.00947 3.02327 3.15805 3.58327 3.73056 3.86853 3.90072 4.52266 4.61615 4.74140 4.76973 5.08129 5.16444 5.27210 5.32483 5.46753 5.48053 5.57087 5.63074 5.77717 5.86981 5.88316 5.88965 5.96216 6.28175 6.41843 6.50197 6.52972 6.88028 7.01149 7.14168 7.22419 7.60726 7.62196 7.68432 7.91696 8.04457 8.06653 8.32654 8.50548 8.72788 8.79309 8.93523 10.18022 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.011220 B = 0.004359 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.835780 B = 6421.375552 C = 8592.330652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.138 3.862 3 N -0.477 5.477 4 C 0.056 3.944 5 C -0.021 4.021 6 C -0.149 4.149 7 C -0.149 4.149 8 S 0.169 5.831 9 C -0.286 4.286 10 C 0.578 3.422 11 O -0.522 6.522 12 N -0.627 5.627 13 C 0.018 3.982 14 C -0.090 4.090 15 C -0.216 4.216 16 C -0.117 4.117 17 C -0.139 4.139 18 C 0.099 3.901 19 C -0.471 4.471 20 H 0.073 0.927 21 C 0.075 3.925 22 N -0.805 5.805 23 Si 0.910 3.090 24 H -0.265 1.265 25 H -0.278 1.278 26 H -0.265 1.265 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.400 0.600 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.132 0.868 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.567 15.211 -1.867 15.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.000 4.000 3 N -0.191 5.191 4 C -0.219 4.219 5 C -0.043 4.043 6 C -0.208 4.208 7 C -0.207 4.207 8 S 0.427 5.573 9 C -0.410 4.410 10 C 0.364 3.636 11 O -0.401 6.401 12 N -0.269 5.269 13 C -0.075 4.075 14 C -0.110 4.110 15 C -0.235 4.235 16 C -0.136 4.136 17 C -0.159 4.159 18 C 0.096 3.904 19 C -0.502 4.502 20 H 0.091 0.909 21 C -0.141 4.141 22 N -0.432 5.432 23 Si 0.735 3.265 24 H -0.190 1.190 25 H -0.202 1.202 26 H -0.189 1.189 27 H 0.097 0.903 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.236 0.764 38 H 0.129 0.871 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.149 0.851 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.660 14.843 -1.884 15.403 hybrid contribution 0.439 0.178 0.241 0.531 sum 4.099 15.021 -1.643 15.657 Atomic orbital electron populations 1.20616 0.85986 1.04359 1.03512 1.20892 0.98444 0.84719 0.95899 1.66011 1.04327 1.31565 1.17202 1.27351 0.94209 0.98546 1.01818 1.19870 0.93133 0.94333 0.96977 1.21961 0.99420 1.02928 0.96474 1.21956 0.99400 1.02911 0.96464 1.83932 1.05822 1.01705 1.65850 1.25921 0.95805 0.99438 1.19871 1.16696 0.86448 0.82186 0.78228 1.90734 1.14255 1.84341 1.50817 1.42731 1.09494 1.04744 1.69888 1.17801 0.99402 0.83793 1.06526 1.20663 0.95528 0.95806 0.99026 1.20377 1.01047 0.93634 1.08478 1.20567 0.96234 0.97229 0.99601 1.21182 0.94524 0.97668 1.02495 1.17456 0.92235 0.91124 0.89633 1.19267 0.96907 1.00046 1.33943 0.90854 1.25839 1.00894 0.94209 0.93186 1.69749 1.34117 1.03496 1.35827 0.86323 0.80899 0.79006 0.80264 1.18965 1.20245 1.18945 0.90339 0.87992 0.91097 0.87994 0.91911 0.91018 0.91867 0.91911 0.91020 0.91942 0.76405 0.87105 0.89016 0.89199 0.85084 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.24 9.72 36.01 0.35 -0.89 16 2 C 0.14 2.22 6.83 -83.52 -0.57 1.65 16 3 N -0.48 -7.08 10.49 -7.48 -0.08 -7.16 16 4 C 0.06 0.72 6.03 -13.31 -0.08 0.63 16 5 C -0.02 -0.19 3.34 -91.77 -0.31 -0.50 16 6 C -0.15 -1.17 9.09 37.16 0.34 -0.83 16 7 C -0.15 -1.13 9.09 37.16 0.34 -0.79 16 8 S 0.17 2.31 21.62 -107.50 -2.32 -0.02 16 9 C -0.29 -4.88 6.51 -36.75 -0.24 -5.12 16 10 C 0.58 11.69 7.62 -12.88 -0.10 11.59 16 11 O -0.52 -11.51 11.73 5.19 0.06 -11.45 16 12 N -0.63 -13.32 4.95 -10.67 -0.05 -13.37 16 13 C 0.02 0.45 6.33 -83.21 -0.53 -0.08 16 14 C -0.09 -2.15 8.68 -39.43 -0.34 -2.49 16 15 C -0.22 -4.95 10.04 -39.36 -0.39 -5.35 16 16 C -0.12 -2.75 9.96 -39.99 -0.40 -3.15 16 17 C -0.14 -3.53 8.61 -39.28 -0.34 -3.87 16 18 C 0.10 2.55 5.56 -106.64 -0.59 1.96 16 19 C -0.47 -11.77 8.22 -37.87 -0.31 -12.08 16 20 H 0.07 1.76 7.63 -52.49 -0.40 1.36 16 21 C 0.07 1.79 5.42 -17.33 -0.09 1.70 16 22 N -0.81 -19.96 10.62 55.55 0.59 -19.36 16 23 Si 0.91 17.87 29.56 -169.99 -5.03 12.85 16 24 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 25 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 26 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.10 1.65 6.06 -51.92 -0.31 1.33 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.51 7.91 -51.93 -0.41 0.09 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.48 7.91 -51.93 -0.41 0.07 16 37 H 0.40 7.86 7.29 -40.82 -0.30 7.57 16 38 H 0.11 2.60 6.19 -52.49 -0.33 2.27 16 39 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.09 1.87 8.06 -52.48 -0.42 1.44 16 41 H 0.13 3.43 6.16 -52.49 -0.32 3.11 16 42 H 0.28 6.38 8.30 -40.82 -0.34 6.05 16 LS Contribution 361.92 15.07 5.45 5.45 Total: -1.00 -28.54 361.92 -10.07 -38.61 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -5.42 Total: 12.08 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -3.27 Total: -17.62 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.46 Total: -39.90 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.06 Total: -11.45 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.32 Total: -0.02 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.54 -10.07 -38.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558189830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.318 kcal (2) G-P(sol) polarization free energy of solvation -28.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds