Wall clock time and date at job start Tue Mar 31 2020 16:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30950 * 123.02680 * 2 1 4 4 C 1.29374 * 117.45938 * 179.97438 * 3 2 1 5 5 C 1.50702 * 124.70905 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47136 * 119.99837 * 5 4 3 7 7 C 1.52998 * 109.46985 * 239.99732 * 5 4 3 8 8 S 1.70923 * 110.58455 * 359.97438 * 4 3 2 9 9 C 1.36706 * 123.03707 * 179.97438 * 2 1 3 10 10 C 1.46625 * 126.17201 * 0.06547 * 9 2 1 11 11 O 1.21704 * 120.00196 * 359.97438 * 10 9 2 12 12 N 1.34779 * 119.99776 * 179.97438 * 10 9 2 13 13 C 1.38984 * 120.00002 * 175.79914 * 12 10 9 14 14 C 1.38688 * 120.28958 * 34.57505 * 13 12 10 15 15 C 1.38195 * 120.03419 * 180.02562 * 14 13 12 16 16 C 1.38883 * 120.61857 * 0.02619 * 15 14 13 17 17 C 1.36457 * 120.59032 * 0.02562 * 16 15 14 18 18 C 1.40741 * 119.93775 * 359.67668 * 17 16 15 19 19 C 1.41056 * 120.30286 * 180.29860 * 18 17 16 20 20 H 1.07995 * 119.99878 * 215.00610 * 19 18 17 21 21 C 1.39954 * 119.99492 * 35.00854 * 19 18 17 22 22 N 1.30852 * 120.00409 * 355.63897 * 21 19 18 23 23 Si 1.86804 * 119.99593 * 175.64236 * 21 19 18 24 24 H 1.48494 * 109.47375 * 60.00032 * 23 21 19 25 25 H 1.48506 * 109.47130 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47020 * 299.99436 * 23 21 19 27 27 H 1.09006 * 109.46742 * 90.03403 * 1 2 3 28 28 H 1.09008 * 109.46819 * 210.02749 * 1 2 3 29 29 H 1.08998 * 109.47791 * 330.03470 * 1 2 3 30 30 H 1.08997 * 109.46928 * 359.97438 * 5 4 3 31 31 H 1.08997 * 109.47472 * 60.00014 * 6 5 4 32 32 H 1.09004 * 109.46987 * 180.02562 * 6 5 4 33 33 H 1.09008 * 109.46924 * 299.99806 * 6 5 4 34 34 H 1.08997 * 109.47286 * 60.00057 * 7 5 4 35 35 H 1.09004 * 109.46861 * 179.97438 * 7 5 4 36 36 H 1.08997 * 109.47113 * 299.99673 * 7 5 4 37 37 H 0.97000 * 120.00189 * 355.79614 * 12 10 9 38 38 H 1.07998 * 119.98428 * 0.03010 * 14 13 12 39 39 H 1.08001 * 119.69527 * 180.02562 * 15 14 13 40 40 H 1.08007 * 119.70758 * 179.97438 * 16 15 14 41 41 H 1.07996 * 120.02918 * 179.97438 * 17 16 15 42 42 H 0.97001 * 119.99713 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2207 1.0979 0.0000 4 6 3.5083 0.9724 0.0005 5 6 4.4826 2.1221 0.0000 6 6 5.3621 2.0459 1.2496 7 6 5.3630 2.0440 -1.2488 8 16 3.9512 -0.6785 0.0018 9 6 2.2523 -1.1460 0.0005 10 6 1.7318 -2.5168 -0.0002 11 8 0.5305 -2.7116 -0.0009 12 7 2.5839 -3.5611 -0.0001 13 6 2.0931 -4.8584 0.0874 14 6 0.8870 -5.1918 -0.5107 15 6 0.4036 -6.4833 -0.4200 16 6 1.1148 -7.4581 0.2676 17 6 2.3036 -7.1577 0.8664 18 6 2.8215 -5.8517 0.7838 19 6 4.0527 -5.5342 1.3946 20 1 4.2018 -4.5592 1.8344 21 6 5.0810 -6.4829 1.4305 22 7 4.8725 -7.6915 0.9745 23 14 6.7513 -6.0236 2.1297 24 1 6.5974 -5.6075 3.5468 25 1 7.6593 -7.1963 2.0534 26 1 7.3254 -4.9019 1.3438 27 1 -0.3633 -0.0006 -1.0277 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3634 0.8902 0.5133 30 1 3.9334 3.0637 -0.0012 31 1 5.9113 1.1043 1.2505 32 1 6.0665 2.8778 1.2495 33 1 4.7348 2.1015 2.1394 34 1 4.7365 2.0984 -2.1390 35 1 6.0674 2.8759 -1.2494 36 1 5.9122 1.1025 -1.2479 37 1 3.5397 -3.4073 -0.0611 38 1 0.3252 -4.4418 -1.0476 39 1 -0.5360 -6.7370 -0.8881 40 1 0.7231 -8.4627 0.3297 41 1 2.8490 -7.9227 1.3991 42 1 5.5852 -8.3491 0.9998 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558189830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:15 Heat of formation + Delta-G solvation = -0.953832 kcal Electronic energy + Delta-G solvation = -25224.320449 eV Core-core repulsion = 21680.627093 eV Total energy + Delta-G solvation = -3543.693356 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62333 -40.72595 -38.94895 -36.65479 -35.60595 -35.49799 -32.38076 -31.53304 -30.81740 -28.96736 -28.11070 -27.08709 -26.07632 -24.03705 -22.95017 -21.98378 -21.67780 -20.59558 -19.23462 -18.94119 -18.40972 -17.41904 -17.00665 -16.62049 -16.26971 -15.90794 -15.63460 -15.42863 -15.12109 -14.77622 -14.66272 -14.44814 -14.25733 -14.13451 -13.63490 -13.62850 -13.42715 -13.01736 -12.97358 -12.85356 -12.76669 -12.59133 -12.48282 -12.16563 -12.14995 -11.99607 -11.91831 -11.64843 -11.16232 -11.06139 -10.88121 -10.64305 -10.60270 -9.81374 -9.25714 -8.84358 -8.47622 -6.39593 -0.89978 0.07120 0.50243 0.82812 1.05773 1.37683 1.40731 1.51007 1.53232 2.05357 2.21937 2.24391 2.78972 2.82822 3.63878 3.68291 3.74998 3.95375 4.01343 4.07965 4.41176 4.49321 4.60865 4.65478 4.69516 4.73205 4.74709 4.78992 4.88141 4.90183 5.05110 5.07823 5.16251 5.26850 5.29232 5.29735 5.31033 5.40929 5.75296 5.82627 6.08809 6.15572 6.22927 6.47412 6.57724 6.66739 6.91969 6.95638 7.19491 8.39962 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.011220 B = 0.004359 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.835780 B = 6421.375552 C = 8592.330652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.146 3.854 3 N -0.494 5.494 4 C 0.076 3.924 5 C -0.023 4.023 6 C -0.149 4.149 7 C -0.148 4.148 8 S 0.196 5.804 9 C -0.330 4.330 10 C 0.581 3.419 11 O -0.548 6.548 12 N -0.631 5.631 13 C 0.012 3.988 14 C -0.103 4.103 15 C -0.216 4.216 16 C -0.121 4.121 17 C -0.162 4.162 18 C 0.071 3.929 19 C -0.493 4.493 20 H 0.075 0.925 21 C 0.035 3.965 22 N -0.834 5.834 23 Si 0.979 3.021 24 H -0.263 1.263 25 H -0.271 1.271 26 H -0.252 1.252 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.405 0.595 38 H 0.112 0.888 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.303 17.426 -1.922 18.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.007 3.993 3 N -0.209 5.209 4 C -0.199 4.199 5 C -0.045 4.045 6 C -0.207 4.207 7 C -0.206 4.206 8 S 0.455 5.545 9 C -0.454 4.454 10 C 0.369 3.631 11 O -0.429 6.429 12 N -0.272 5.272 13 C -0.082 4.082 14 C -0.123 4.123 15 C -0.236 4.236 16 C -0.139 4.139 17 C -0.182 4.182 18 C 0.067 3.933 19 C -0.524 4.524 20 H 0.093 0.907 21 C -0.178 4.178 22 N -0.461 5.461 23 Si 0.799 3.201 24 H -0.187 1.187 25 H -0.195 1.195 26 H -0.176 1.176 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.130 0.870 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.242 0.758 38 H 0.130 0.870 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.399 17.064 -1.948 18.003 hybrid contribution -0.128 -0.389 0.229 0.469 sum 5.271 16.675 -1.719 17.572 Atomic orbital electron populations 1.20605 0.85421 1.04255 1.04013 1.21174 0.99187 0.84813 0.94128 1.66131 1.05099 1.30779 1.18886 1.28220 0.94292 0.99236 0.98135 1.20161 0.92835 0.92993 0.98520 1.21994 0.99460 1.04019 0.95213 1.21986 0.99424 1.04026 0.95152 1.83783 1.03232 1.02004 1.65491 1.25593 0.98218 0.97887 1.23698 1.17038 0.86040 0.83092 0.76950 1.90700 1.15279 1.85123 1.51775 1.42700 1.09926 1.04097 1.70514 1.17961 0.99417 0.84907 1.05928 1.20839 0.95704 0.96386 0.99409 1.20702 1.01873 0.93129 1.07898 1.20814 0.95564 0.98593 0.98949 1.21205 0.95568 0.97659 1.03776 1.17786 0.93143 0.91755 0.90605 1.19452 0.97398 1.00637 1.34870 0.90719 1.26689 1.04313 0.93806 0.93002 1.69827 1.35470 1.04433 1.36356 0.85288 0.76122 0.79164 0.79487 1.18743 1.19548 1.17591 0.89450 0.90020 0.89120 0.86981 0.92152 0.88304 0.92629 0.92473 0.88353 0.92106 0.75807 0.87036 0.86316 0.86695 0.86430 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.41 9.72 71.24 0.69 -1.72 16 2 C 0.15 4.62 6.83 42.33 0.29 4.91 16 3 N -0.49 -13.95 10.49 -177.58 -1.86 -15.82 16 4 C 0.08 1.79 6.03 88.47 0.53 2.32 16 5 C -0.02 -0.35 3.34 -11.54 -0.04 -0.39 16 6 C -0.15 -1.85 9.09 71.98 0.65 -1.20 16 7 C -0.15 -1.76 9.09 71.98 0.65 -1.10 16 8 S 0.20 5.14 21.62 -56.49 -1.22 3.92 16 9 C -0.33 -11.29 6.51 24.10 0.16 -11.13 16 10 C 0.58 24.07 7.62 86.43 0.66 24.73 16 11 O -0.55 -24.92 11.73 -4.36 -0.05 -24.97 16 12 N -0.63 -27.51 4.95 -305.89 -1.51 -29.02 16 13 C 0.01 0.60 6.33 38.92 0.25 0.85 16 14 C -0.10 -5.02 8.68 22.37 0.19 -4.83 16 15 C -0.22 -9.94 10.04 22.41 0.22 -9.72 16 16 C -0.12 -5.68 9.96 22.01 0.22 -5.46 16 17 C -0.16 -8.49 8.61 22.47 0.19 -8.30 16 18 C 0.07 3.76 5.56 -21.17 -0.12 3.64 16 19 C -0.49 -25.19 8.22 23.38 0.19 -25.00 16 20 H 0.07 3.66 7.63 -2.91 -0.02 3.63 16 21 C 0.04 1.70 5.42 85.25 0.46 2.17 16 22 N -0.83 -42.00 10.62 21.83 0.23 -41.77 16 23 Si 0.98 36.16 29.56 68.60 2.03 38.19 16 24 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 25 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 26 H -0.25 -8.73 7.11 99.48 0.71 -8.03 16 27 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.08 2.71 6.06 -2.38 -0.01 2.69 16 29 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 0.79 7.91 -2.39 -0.02 0.78 16 32 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.06 0.76 7.91 -2.39 -0.02 0.74 16 37 H 0.41 16.33 7.29 -92.71 -0.68 15.65 16 38 H 0.11 5.34 6.19 -2.91 -0.02 5.33 16 39 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 40 H 0.12 4.71 8.06 -2.91 -0.02 4.68 16 41 H 0.12 6.39 6.16 -2.91 -0.02 6.37 16 42 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 Total: -1.00 -62.87 361.92 3.21 -59.66 By element: Atomic # 1 Polarization: 39.65 SS G_CDS: 0.38 Total: 40.04 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 5.21 Total: -30.23 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -3.14 Total: -86.61 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.05 Total: -24.97 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.19 kcal Atomic # 16 Polarization: 5.14 SS G_CDS: -1.22 Total: 3.92 kcal Total: -62.87 3.21 -59.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558189830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.711 kcal (2) G-P(sol) polarization free energy of solvation -62.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds