Wall clock time and date at job start Tue Mar 31 2020 15:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30626 * 122.97992 * 2 1 4 4 C 1.30344 * 117.29879 * 180.02562 * 3 2 1 5 5 C 1.47799 * 124.75268 * 180.02562 * 4 3 2 6 6 C 1.39586 * 120.14781 * 179.69935 * 5 4 3 7 7 C 1.37962 * 119.84954 * 179.74352 * 6 5 4 8 8 C 1.38358 * 120.14393 * 0.53328 * 7 6 5 9 9 C 1.50699 * 119.85306 * 179.69898 * 8 7 6 10 10 C 1.38360 * 120.29992 * 359.72359 * 8 7 6 11 11 C 1.37956 * 120.14347 * 0.02562 * 10 8 7 12 12 S 1.70924 * 110.49845 * 0.02562 * 4 3 2 13 13 C 1.36886 * 122.97978 * 180.02562 * 2 1 3 14 14 C 1.46596 * 126.12147 * 359.96112 * 13 2 1 15 15 O 1.21703 * 119.99995 * 350.72231 * 14 13 2 16 16 N 1.34772 * 119.99549 * 170.72395 * 14 13 2 17 17 C 1.46494 * 120.00644 * 0.67067 * 16 14 13 18 18 C 1.46508 * 119.99655 * 180.66540 * 16 14 13 19 19 C 1.50697 * 109.46722 * 90.00008 * 18 16 14 20 20 H 1.08003 * 120.00389 * 0.02562 * 19 18 16 21 21 C 1.37882 * 119.99662 * 179.97438 * 19 18 16 22 22 N 1.31508 * 119.99940 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99961 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47268 * 89.99691 * 23 21 19 25 25 H 1.48502 * 109.47464 * 210.00118 * 23 21 19 26 26 H 1.48504 * 109.47140 * 330.00062 * 23 21 19 27 27 H 1.09000 * 109.46986 * 269.97786 * 1 2 3 28 28 H 1.08997 * 109.47029 * 29.98234 * 1 2 3 29 29 H 1.09001 * 109.46848 * 149.97981 * 1 2 3 30 30 H 1.07999 * 120.07341 * 0.02562 * 6 5 4 31 31 H 1.07999 * 119.92429 * 180.25661 * 7 6 5 32 32 H 1.09000 * 109.47381 * 270.02731 * 9 8 7 33 33 H 1.09006 * 109.47054 * 30.01748 * 9 8 7 34 34 H 1.08998 * 109.47799 * 150.02535 * 9 8 7 35 35 H 1.08001 * 119.92980 * 180.02562 * 10 8 7 36 36 H 1.07999 * 120.07382 * 179.97438 * 11 10 8 37 37 H 1.09000 * 109.47498 * 83.51702 * 17 16 14 38 38 H 1.08997 * 109.47272 * 203.51835 * 17 16 14 39 39 H 1.08997 * 109.47014 * 323.51753 * 17 16 14 40 40 H 1.08995 * 109.47052 * 210.00202 * 18 16 14 41 41 H 1.09007 * 109.46647 * 330.00343 * 18 16 14 42 42 H 0.96999 * 120.00269 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2181 1.0958 0.0000 4 6 3.5151 0.9667 -0.0005 5 6 4.4737 2.0917 -0.0001 6 6 5.8471 1.8425 0.0056 7 6 6.7365 2.8972 0.0007 8 6 6.2696 4.1997 0.0012 9 6 7.2469 5.3468 0.0026 10 6 4.9095 4.4537 0.0009 11 6 4.0095 3.4082 0.0007 12 16 3.9523 -0.6857 -0.0018 13 6 2.2522 -1.1483 -0.0005 14 6 1.7292 -2.5178 -0.0003 15 8 0.5405 -2.7152 0.1703 16 7 2.5650 -3.5582 -0.1890 17 6 3.9980 -3.3215 -0.3797 18 6 2.0402 -4.9260 -0.2034 19 6 1.6583 -5.3026 -1.6117 20 1 1.7933 -4.5942 -2.4157 21 6 1.1374 -6.5520 -1.8739 22 7 0.9734 -7.4148 -0.8950 23 14 0.6646 -7.0192 -3.6196 24 1 1.8315 -7.6359 -4.3003 25 1 -0.4585 -7.9901 -3.5853 26 1 0.2450 -5.8029 -4.3611 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 6.2127 0.8263 0.0093 31 1 7.7993 2.7057 0.0009 32 1 7.4822 5.6224 1.0306 33 1 8.1603 5.0466 -0.5111 34 1 6.8053 6.2011 -0.5105 35 1 4.5517 5.4727 0.0009 36 1 2.9481 3.6078 0.0009 37 1 4.4811 -3.2148 0.5916 38 1 4.4376 -4.1640 -0.9135 39 1 4.1417 -2.4094 -0.9589 40 1 2.8043 -5.6121 0.1617 41 1 1.1618 -4.9848 0.4394 42 1 0.6067 -8.2936 -1.0794 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874173030.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:55 Heat of formation + Delta-G solvation = 31.399350 kcal Electronic energy + Delta-G solvation = -24628.007390 eV Core-core repulsion = 21085.716973 eV Total energy + Delta-G solvation = -3542.290417 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.15487 -39.43242 -38.48206 -35.01280 -33.84254 -32.70787 -31.35026 -31.12699 -28.86205 -27.84999 -27.42103 -25.85080 -24.09519 -23.38545 -22.87495 -21.28522 -20.34942 -18.37288 -18.01223 -16.63110 -16.55303 -16.20972 -15.56816 -15.30737 -15.19137 -15.01951 -14.37862 -14.28193 -13.99243 -13.80216 -13.71716 -13.40120 -13.00686 -12.85537 -12.64100 -12.53451 -12.41106 -12.22012 -11.97899 -11.90261 -11.65006 -11.35165 -11.29048 -11.11391 -10.93436 -10.66656 -10.21135 -9.78507 -9.59494 -9.50757 -9.25547 -9.14937 -9.08925 -8.48725 -8.18667 -7.72414 -6.09760 -4.15065 0.00819 1.12211 1.25443 1.29736 1.72027 2.71111 3.27449 3.34462 3.38614 3.54824 3.65905 3.80857 3.92657 4.40826 4.49330 4.55618 4.71654 4.84216 5.00047 5.02487 5.12453 5.23037 5.24488 5.27108 5.36719 5.38120 5.44689 5.65133 5.70062 5.75773 5.89494 5.92776 5.99593 6.04029 6.13226 6.23184 6.27145 6.58187 6.64270 6.92029 7.32736 7.39699 7.75536 7.85814 8.14695 8.20760 8.77680 8.93311 9.50181 10.98260 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.022529 B = 0.002674 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.553163 B =10468.460221 C =11011.773262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.140 3.860 3 N -0.474 5.474 4 C 0.043 3.957 5 C -0.028 4.028 6 C -0.096 4.096 7 C -0.119 4.119 8 C -0.076 4.076 9 C -0.116 4.116 10 C -0.124 4.124 11 C -0.069 4.069 12 S 0.211 5.789 13 C -0.286 4.286 14 C 0.581 3.419 15 O -0.519 6.519 16 N -0.593 5.593 17 C 0.071 3.929 18 C 0.247 3.753 19 C -0.529 4.529 20 H 0.058 0.942 21 C 0.062 3.938 22 N -0.893 5.893 23 Si 0.899 3.101 24 H -0.280 1.280 25 H -0.284 1.284 26 H -0.274 1.274 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.127 0.873 36 H 0.135 0.865 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.060 0.940 40 H 0.036 0.964 41 H 0.049 0.951 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.552 22.198 2.848 26.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.001 3.999 3 N -0.189 5.189 4 C -0.226 4.226 5 C -0.031 4.031 6 C -0.116 4.116 7 C -0.137 4.137 8 C -0.077 4.077 9 C -0.173 4.173 10 C -0.142 4.142 11 C -0.090 4.090 12 S 0.473 5.527 13 C -0.410 4.410 14 C 0.367 3.633 15 O -0.398 6.398 16 N -0.324 5.324 17 C -0.075 4.075 18 C 0.129 3.871 19 C -0.568 4.568 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.532 5.532 23 Si 0.727 3.273 24 H -0.206 1.206 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.145 0.855 36 H 0.153 0.847 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.622 21.818 2.987 25.894 hybrid contribution -1.041 -0.336 -1.010 1.489 sum 12.581 21.483 1.977 24.974 Atomic orbital electron populations 1.20558 0.85936 1.04055 1.03532 1.20793 0.98399 0.84835 0.95892 1.66219 1.03942 1.31899 1.16815 1.25717 0.93642 0.99794 1.03477 1.17913 0.90805 0.90846 1.03557 1.21173 0.91578 0.99611 0.99276 1.20893 0.99633 0.91655 1.01521 1.20090 0.94502 0.94942 0.98185 1.20833 0.97925 0.96032 1.02505 1.21028 0.92421 0.99175 1.01541 1.21324 1.00689 0.90872 0.96123 1.84137 1.06201 0.97314 1.65085 1.26268 0.95328 1.00135 1.19314 1.16650 0.86255 0.81920 0.78488 1.90780 1.14610 1.84104 1.50311 1.48056 1.06383 1.08975 1.69018 1.21873 0.83163 1.01601 1.00890 1.19398 0.95583 0.74058 0.98092 1.21406 1.42828 0.99162 0.93432 0.92381 1.24929 0.95307 0.96215 0.97553 1.69923 1.44949 1.06858 1.31454 0.86478 0.78184 0.78361 0.84315 1.20593 1.21004 1.19850 0.90245 0.91199 0.88314 0.85613 0.85372 0.90937 0.91354 0.91380 0.85535 0.84668 0.92644 0.88613 0.92304 0.94556 0.93340 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 9.61 36.01 0.35 -0.96 16 2 C 0.14 2.43 6.83 -83.59 -0.57 1.86 16 3 N -0.47 -7.65 10.02 -8.21 -0.08 -7.73 16 4 C 0.04 0.62 7.13 -14.27 -0.10 0.52 16 5 C -0.03 -0.34 5.87 -104.98 -0.62 -0.95 16 6 C -0.10 -0.94 9.57 -39.18 -0.37 -1.32 16 7 C -0.12 -0.97 9.68 -39.64 -0.38 -1.36 16 8 C -0.08 -0.60 5.89 -104.53 -0.62 -1.22 16 9 C -0.12 -0.60 10.00 36.01 0.36 -0.24 16 10 C -0.12 -1.08 9.68 -39.64 -0.38 -1.46 16 11 C -0.07 -0.75 9.67 -39.18 -0.38 -1.13 16 12 S 0.21 2.89 16.94 -107.50 -1.82 1.07 16 13 C -0.29 -5.19 6.27 -36.70 -0.23 -5.42 16 14 C 0.58 12.71 7.60 -12.89 -0.10 12.62 16 15 O -0.52 -12.99 14.05 5.19 0.07 -12.91 16 16 N -0.59 -12.77 2.86 -184.54 -0.53 -13.30 16 17 C 0.07 1.14 8.95 59.84 0.54 1.68 16 18 C 0.25 6.37 5.14 -5.19 -0.03 6.35 16 19 C -0.53 -14.83 9.39 -34.44 -0.32 -15.15 16 20 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 23 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.10 1.79 6.29 -51.93 -0.33 1.46 16 30 H 0.13 1.06 7.22 -52.49 -0.38 0.68 16 31 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 34 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.14 1.51 7.79 -52.49 -0.41 1.10 16 37 H 0.06 0.75 7.81 -51.93 -0.41 0.35 16 38 H 0.10 1.50 8.02 -51.93 -0.42 1.09 16 39 H 0.06 0.87 4.62 -23.81 -0.11 0.76 16 40 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 41 H 0.05 1.40 7.41 -51.93 -0.38 1.01 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 364.81 15.07 5.50 5.50 Total: -1.00 -33.12 364.81 -9.45 -42.57 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -5.35 Total: -1.91 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -2.96 Total: -4.53 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.13 Total: -46.44 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.07 Total: -12.91 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -1.82 Total: 1.07 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.12 -9.45 -42.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874173030.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.972 kcal (2) G-P(sol) polarization free energy of solvation -33.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds