Wall clock time and date at job start Tue Mar 31 2020 15:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30626 * 122.97992 * 2 1 4 4 C 1.30344 * 117.29879 * 180.02562 * 3 2 1 5 5 C 1.47799 * 124.75268 * 180.02562 * 4 3 2 6 6 C 1.39586 * 120.14781 * 179.69935 * 5 4 3 7 7 C 1.37962 * 119.84954 * 179.74352 * 6 5 4 8 8 C 1.38358 * 120.14393 * 0.53328 * 7 6 5 9 9 C 1.50699 * 119.85306 * 179.69898 * 8 7 6 10 10 C 1.38360 * 120.29992 * 359.72359 * 8 7 6 11 11 C 1.37956 * 120.14347 * 0.02562 * 10 8 7 12 12 S 1.70924 * 110.49845 * 0.02562 * 4 3 2 13 13 C 1.36886 * 122.97978 * 180.02562 * 2 1 3 14 14 C 1.46596 * 126.12147 * 359.96112 * 13 2 1 15 15 O 1.21703 * 119.99995 * 350.72231 * 14 13 2 16 16 N 1.34772 * 119.99549 * 170.72395 * 14 13 2 17 17 C 1.46494 * 120.00644 * 0.67067 * 16 14 13 18 18 C 1.46508 * 119.99655 * 180.66540 * 16 14 13 19 19 C 1.50697 * 109.46722 * 90.00008 * 18 16 14 20 20 H 1.08003 * 120.00389 * 0.02562 * 19 18 16 21 21 C 1.37882 * 119.99662 * 179.97438 * 19 18 16 22 22 N 1.31508 * 119.99940 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99961 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47268 * 89.99691 * 23 21 19 25 25 H 1.48502 * 109.47464 * 210.00118 * 23 21 19 26 26 H 1.48504 * 109.47140 * 330.00062 * 23 21 19 27 27 H 1.09000 * 109.46986 * 269.97786 * 1 2 3 28 28 H 1.08997 * 109.47029 * 29.98234 * 1 2 3 29 29 H 1.09001 * 109.46848 * 149.97981 * 1 2 3 30 30 H 1.07999 * 120.07341 * 0.02562 * 6 5 4 31 31 H 1.07999 * 119.92429 * 180.25661 * 7 6 5 32 32 H 1.09000 * 109.47381 * 270.02731 * 9 8 7 33 33 H 1.09006 * 109.47054 * 30.01748 * 9 8 7 34 34 H 1.08998 * 109.47799 * 150.02535 * 9 8 7 35 35 H 1.08001 * 119.92980 * 180.02562 * 10 8 7 36 36 H 1.07999 * 120.07382 * 179.97438 * 11 10 8 37 37 H 1.09000 * 109.47498 * 83.51702 * 17 16 14 38 38 H 1.08997 * 109.47272 * 203.51835 * 17 16 14 39 39 H 1.08997 * 109.47014 * 323.51753 * 17 16 14 40 40 H 1.08995 * 109.47052 * 210.00202 * 18 16 14 41 41 H 1.09007 * 109.46647 * 330.00343 * 18 16 14 42 42 H 0.96999 * 120.00269 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2181 1.0958 0.0000 4 6 3.5151 0.9667 -0.0005 5 6 4.4737 2.0917 -0.0001 6 6 5.8471 1.8425 0.0056 7 6 6.7365 2.8972 0.0007 8 6 6.2696 4.1997 0.0012 9 6 7.2469 5.3468 0.0026 10 6 4.9095 4.4537 0.0009 11 6 4.0095 3.4082 0.0007 12 16 3.9523 -0.6857 -0.0018 13 6 2.2522 -1.1483 -0.0005 14 6 1.7292 -2.5178 -0.0003 15 8 0.5405 -2.7152 0.1703 16 7 2.5650 -3.5582 -0.1890 17 6 3.9980 -3.3215 -0.3797 18 6 2.0402 -4.9260 -0.2034 19 6 1.6583 -5.3026 -1.6117 20 1 1.7933 -4.5942 -2.4157 21 6 1.1374 -6.5520 -1.8739 22 7 0.9734 -7.4148 -0.8950 23 14 0.6646 -7.0192 -3.6196 24 1 1.8315 -7.6359 -4.3003 25 1 -0.4585 -7.9901 -3.5853 26 1 0.2450 -5.8029 -4.3611 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 6.2127 0.8263 0.0093 31 1 7.7993 2.7057 0.0009 32 1 7.4822 5.6224 1.0306 33 1 8.1603 5.0466 -0.5111 34 1 6.8053 6.2011 -0.5105 35 1 4.5517 5.4727 0.0009 36 1 2.9481 3.6078 0.0009 37 1 4.4811 -3.2148 0.5916 38 1 4.4376 -4.1640 -0.9135 39 1 4.1417 -2.4094 -0.9589 40 1 2.8043 -5.6121 0.1617 41 1 1.1618 -4.9848 0.4394 42 1 0.6067 -8.2936 -1.0794 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874173030.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:55 Heat of formation + Delta-G solvation = 11.910333 kcal Electronic energy + Delta-G solvation = -24628.852497 eV Core-core repulsion = 21085.716973 eV Total energy + Delta-G solvation = -3543.135524 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.39506 -40.53745 -39.76000 -36.76827 -34.88351 -34.59007 -32.31500 -31.96195 -30.58864 -29.00630 -28.57128 -27.48801 -25.21730 -24.94472 -23.80689 -22.09544 -21.85077 -19.53615 -19.42492 -18.73052 -17.76260 -17.58205 -16.85948 -16.73764 -16.25674 -16.07451 -15.84409 -15.61026 -15.10086 -14.65468 -14.58986 -14.44980 -14.33743 -14.21848 -14.11800 -13.86106 -13.65775 -13.39234 -13.22041 -12.98478 -12.91205 -12.80438 -12.59509 -12.49237 -12.28251 -12.19971 -11.95109 -11.78786 -10.96642 -10.71101 -10.66981 -10.60571 -10.22357 -9.95157 -9.62679 -9.04537 -8.24883 -6.39598 -1.11886 0.09178 0.32493 0.43098 0.50864 1.35909 1.38942 1.48279 1.50830 2.04413 2.22772 2.39077 2.80794 2.82171 3.05050 3.58312 3.70562 3.90305 3.97358 4.02900 4.04025 4.07061 4.40250 4.40951 4.46346 4.62620 4.66155 4.69542 4.77729 4.81345 4.85732 4.91016 4.94884 5.11693 5.16496 5.23526 5.28718 5.40502 5.46303 5.47026 5.63349 5.73925 5.97394 6.00858 6.45887 6.59005 6.67805 7.14688 7.32930 8.82260 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.022529 B = 0.002674 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.553163 B =10468.460221 C =11011.773262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.144 3.856 3 N -0.496 5.496 4 C 0.055 3.945 5 C -0.063 4.063 6 C -0.095 4.095 7 C -0.120 4.120 8 C -0.067 4.067 9 C -0.117 4.117 10 C -0.128 4.128 11 C -0.078 4.078 12 S 0.280 5.720 13 C -0.338 4.338 14 C 0.576 3.424 15 O -0.569 6.569 16 N -0.602 5.602 17 C 0.065 3.935 18 C 0.263 3.737 19 C -0.545 4.545 20 H 0.051 0.949 21 C 0.011 3.989 22 N -0.925 5.925 23 Si 0.967 3.033 24 H -0.261 1.261 25 H -0.280 1.280 26 H -0.276 1.276 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.139 0.861 31 H 0.158 0.842 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.148 0.852 36 H 0.125 0.875 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.035 0.965 41 H 0.006 0.994 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.874 24.604 1.938 29.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.003 3.997 3 N -0.211 5.211 4 C -0.213 4.213 5 C -0.067 4.067 6 C -0.116 4.116 7 C -0.138 4.138 8 C -0.068 4.068 9 C -0.173 4.173 10 C -0.146 4.146 11 C -0.100 4.100 12 S 0.544 5.456 13 C -0.462 4.462 14 C 0.364 3.636 15 O -0.451 6.451 16 N -0.333 5.333 17 C -0.079 4.079 18 C 0.142 3.858 19 C -0.584 4.584 20 H 0.069 0.931 21 C -0.188 4.188 22 N -0.564 5.564 23 Si 0.791 3.209 24 H -0.186 1.186 25 H -0.205 1.205 26 H -0.201 1.201 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.157 0.843 31 H 0.175 0.825 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.165 0.835 36 H 0.143 0.857 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.053 0.947 41 H 0.024 0.976 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.005 24.228 2.076 29.672 hybrid contribution -1.895 -0.831 -0.672 2.175 sum 15.110 23.397 1.404 27.887 Atomic orbital electron populations 1.20496 0.85920 1.03622 1.03751 1.20978 0.98937 0.85149 0.94617 1.66306 1.04782 1.31136 1.18901 1.26309 0.93621 1.01134 1.00277 1.18050 0.91330 0.90430 1.06869 1.21394 0.90732 1.00959 0.98508 1.21276 1.00887 0.91245 1.00405 1.20527 0.94689 0.95980 0.95614 1.20921 0.97692 0.95157 1.03544 1.21298 0.92681 0.99593 1.01019 1.21385 1.00784 0.91274 0.96561 1.83560 1.02036 0.95966 1.64068 1.25853 0.98744 0.98116 1.23466 1.17110 0.85754 0.83324 0.77376 1.90730 1.16692 1.85253 1.52387 1.48004 1.08669 1.07391 1.69187 1.22150 0.80070 1.02666 1.03020 1.18889 0.94028 0.76539 0.96345 1.21636 1.43286 0.99346 0.94096 0.93106 1.25811 0.95027 0.96120 1.01854 1.70032 1.45487 1.07298 1.33568 0.85427 0.78440 0.77866 0.79151 1.18630 1.20493 1.20102 0.89702 0.89158 0.90972 0.84344 0.82475 0.89791 0.90010 0.90457 0.83455 0.85711 0.89648 0.88110 0.90657 0.94716 0.97630 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.66 9.61 71.24 0.68 -1.98 16 2 C 0.14 5.13 6.83 42.42 0.29 5.42 16 3 N -0.50 -15.99 10.02 -179.88 -1.80 -17.79 16 4 C 0.06 1.53 7.13 87.45 0.62 2.15 16 5 C -0.06 -1.41 5.87 -20.10 -0.12 -1.53 16 6 C -0.10 -1.58 9.57 22.53 0.22 -1.37 16 7 C -0.12 -1.49 9.68 22.23 0.22 -1.28 16 8 C -0.07 -0.80 5.89 -19.81 -0.12 -0.92 16 9 C -0.12 -0.69 10.00 71.24 0.71 0.02 16 10 C -0.13 -1.88 9.68 22.23 0.22 -1.66 16 11 C -0.08 -1.60 9.67 22.53 0.22 -1.38 16 12 S 0.28 7.29 16.94 -56.49 -0.96 6.34 16 13 C -0.34 -12.53 6.27 24.13 0.15 -12.38 16 14 C 0.58 26.50 7.60 86.42 0.66 27.15 16 15 O -0.57 -30.57 14.05 -4.36 -0.06 -30.64 16 16 N -0.60 -26.82 2.86 -855.99 -2.45 -29.27 16 17 C 0.07 2.05 8.95 127.77 1.14 3.19 16 18 C 0.26 14.20 5.14 85.63 0.44 14.64 16 19 C -0.55 -31.49 9.39 25.60 0.24 -31.25 16 20 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 21 C 0.01 0.66 5.46 84.66 0.46 1.12 16 22 N -0.92 -55.39 13.29 21.45 0.28 -55.11 16 23 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 24 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 27 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.07 2.83 6.29 -2.39 -0.02 2.82 16 30 H 0.14 1.84 7.22 -2.91 -0.02 1.82 16 31 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 32 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.08 0.31 8.08 -2.38 -0.02 0.30 16 34 H 0.08 0.36 8.08 -2.39 -0.02 0.34 16 35 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 36 H 0.12 2.74 7.79 -2.91 -0.02 2.72 16 37 H 0.09 2.17 7.81 -2.39 -0.02 2.15 16 38 H 0.10 3.07 8.02 -2.39 -0.02 3.05 16 39 H 0.08 2.10 4.62 -20.27 -0.09 2.01 16 40 H 0.03 1.86 8.07 -2.39 -0.02 1.84 16 41 H 0.01 0.35 7.41 -2.38 -0.02 0.33 16 42 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -75.73 364.81 4.03 -71.69 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 0.96 Total: 7.88 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 6.03 Total: -0.05 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -3.96 Total: -102.17 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.06 Total: -30.64 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: 7.29 SS G_CDS: -0.96 Total: 6.34 kcal Total: -75.73 4.03 -71.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874173030.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.602 kcal (2) G-P(sol) polarization free energy of solvation -75.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds