Wall clock time and date at job start Tue Mar 31 2020 16:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47272 * 2 1 4 4 C 1.52999 * 109.47223 * 239.99255 * 2 1 3 5 5 C 1.50707 * 109.46609 * 119.99771 * 2 1 3 6 6 N 1.28643 * 124.71118 * 61.52794 * 5 2 1 7 7 C 1.33578 * 115.77158 * 180.02562 * 6 5 2 8 8 C 1.47138 * 123.15616 * 179.97438 * 7 6 5 9 9 O 1.21656 * 120.00080 * 187.43979 * 8 7 6 10 10 N 1.34777 * 119.99871 * 7.71046 * 8 7 6 11 11 C 1.36991 * 119.99956 * 185.99076 * 10 8 7 12 12 H 1.08004 * 119.99584 * 245.68070 * 11 10 8 13 13 C 1.38910 * 120.00349 * 65.68474 * 11 10 8 14 14 N 1.31419 * 120.00308 * 43.90824 * 13 11 10 15 15 Si 1.86799 * 120.00015 * 223.91843 * 13 11 10 16 16 H 1.48502 * 109.47565 * 94.99310 * 15 13 11 17 17 H 1.48501 * 109.47119 * 214.99501 * 15 13 11 18 18 H 1.48502 * 109.47073 * 334.99385 * 15 13 11 19 19 C 1.39705 * 119.99875 * 5.99418 * 10 8 7 20 20 C 1.38976 * 120.08059 * 55.03669 * 19 10 8 21 21 C 1.38082 * 119.91458 * 179.81231 * 20 19 10 22 22 C 1.38309 * 120.08384 * 0.44471 * 21 20 19 23 23 C 1.38311 * 120.15848 * 359.79030 * 22 21 20 24 24 C 1.38080 * 120.08072 * 359.97438 * 23 22 21 25 25 C 1.35324 * 113.68854 * 0.26782 * 7 6 5 26 26 S 1.70769 * 124.70518 * 241.54318 * 5 2 1 27 27 H 1.09003 * 109.47148 * 295.18014 * 1 2 3 28 28 H 1.08998 * 109.46551 * 55.17539 * 1 2 3 29 29 H 1.08997 * 109.47479 * 175.17619 * 1 2 3 30 30 H 1.08999 * 109.47215 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47116 * 299.99506 * 3 2 1 32 32 H 1.09000 * 109.47492 * 59.99703 * 3 2 1 33 33 H 1.09000 * 109.47214 * 319.23173 * 4 2 1 34 34 H 1.09002 * 109.46405 * 79.22454 * 4 2 1 35 35 H 1.08994 * 109.47412 * 199.22190 * 4 2 1 36 36 H 0.97000 * 120.00519 * 184.95490 * 14 13 11 37 37 H 1.08002 * 120.04547 * 0.02562 * 20 19 10 38 38 H 1.08004 * 119.95651 * 180.20987 * 21 20 19 39 39 H 1.08002 * 119.91985 * 179.76610 * 22 21 20 40 40 H 1.07999 * 119.96034 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.03777 * 179.97438 * 24 23 22 42 42 H 1.07998 * 125.59044 * 179.70150 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 2.0323 -0.7104 1.2306 6 7 1.8011 -1.9448 1.5095 7 6 2.3337 -2.3921 2.6499 8 6 2.1711 -3.7748 3.1260 9 8 2.5638 -4.0867 4.2344 10 7 1.5921 -4.6972 2.3320 11 6 1.3291 -5.9509 2.8175 12 1 1.8465 -6.8071 2.4104 13 6 0.3971 -6.1210 3.8334 14 7 -0.7502 -5.4818 3.7864 15 14 0.7746 -7.2582 5.2665 16 1 1.3318 -6.4670 6.3929 17 1 -0.4735 -7.9329 5.7051 18 1 1.7657 -8.2789 4.8407 19 6 1.2602 -4.3748 1.0138 20 6 2.2316 -3.8796 0.1521 21 6 1.9006 -3.5657 -1.1512 22 6 0.6022 -3.7349 -1.5968 23 6 -0.3682 -4.2229 -0.7406 24 6 -0.0435 -4.5435 0.5627 25 6 3.0315 -1.4527 3.3293 26 16 2.9870 0.0116 2.4485 27 1 -0.3633 0.4372 0.9300 28 1 -0.3632 0.5869 -0.8436 29 1 -0.3634 -1.0240 -0.0864 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.4274 -1.6036 -1.4348 34 1 1.9800 -0.0504 -2.1061 35 1 3.0760 -1.0239 -1.0965 36 1 -1.3707 -5.5437 4.5294 37 1 3.2449 -3.7438 0.5003 38 1 2.6558 -3.1841 -1.8225 39 1 0.3454 -3.4849 -2.6156 40 1 -1.3812 -4.3533 -1.0917 41 1 -0.8020 -4.9241 1.2308 42 1 3.5355 -1.6038 4.2725 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264010021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:10 Heat of formation + Delta-G solvation = 55.815981 kcal Electronic energy + Delta-G solvation = -27291.470702 eV Core-core repulsion = 23750.239069 eV Total energy + Delta-G solvation = -3541.231632 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -40.29735 -38.48614 -37.66298 -36.21540 -34.48046 -32.18268 -30.14423 -29.59674 -28.60222 -27.37350 -27.03764 -26.18907 -24.39885 -22.64021 -21.54280 -21.22347 -19.17610 -18.99336 -17.91915 -17.36300 -15.96371 -15.41989 -15.26290 -15.13410 -14.74860 -14.22628 -14.06493 -14.02789 -13.74926 -13.55915 -13.21138 -12.86062 -12.66722 -12.51384 -12.23955 -12.15681 -11.96652 -11.83960 -11.50396 -11.42303 -11.32876 -11.27055 -10.90218 -10.78369 -10.64280 -10.62044 -10.26868 -10.17793 -9.40037 -9.21540 -8.95835 -8.53428 -8.44383 -8.16691 -7.81038 -7.01089 -6.44718 -4.22356 0.98746 1.62675 2.01923 2.18077 2.38448 2.82710 3.28366 3.39266 3.45984 4.07802 4.24828 4.38773 4.61899 4.82039 4.91974 4.94197 4.95926 5.14769 5.46126 5.52023 5.60893 5.64542 5.66106 5.76194 5.76869 5.79640 5.85491 5.93066 6.01026 6.08467 6.10811 6.31681 6.34591 6.45233 6.52636 6.56160 6.78355 6.97073 7.23768 7.38430 7.48783 7.63747 7.82875 7.97582 8.29054 8.80883 8.85167 9.27569 9.90177 10.45809 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.005711 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.686104 B = 4901.837445 C = 6106.770534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.018 3.982 3 C -0.152 4.152 4 C -0.151 4.151 5 C 0.035 3.965 6 N -0.405 5.405 7 C 0.031 3.969 8 C 0.560 3.440 9 O -0.540 6.540 10 N -0.388 5.388 11 C -0.377 4.377 12 H 0.085 0.915 13 C 0.101 3.899 14 N -0.809 5.809 15 Si 0.890 3.110 16 H -0.270 1.270 17 H -0.290 1.290 18 H -0.266 1.266 19 C 0.187 3.813 20 C -0.108 4.108 21 C -0.112 4.112 22 C -0.157 4.157 23 C -0.119 4.119 24 C -0.109 4.109 25 C -0.244 4.244 26 S 0.149 5.851 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.270 0.730 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.136 0.864 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.069 13.231 -9.764 16.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.014 3.986 3 C -0.210 4.210 4 C -0.209 4.209 5 C -0.246 4.246 6 N -0.118 5.118 7 C -0.103 4.103 8 C 0.347 3.653 9 O -0.419 6.419 10 N -0.103 5.103 11 C -0.500 4.500 12 H 0.102 0.898 13 C -0.114 4.114 14 N -0.437 5.437 15 Si 0.715 3.285 16 H -0.196 1.196 17 H -0.216 1.216 18 H -0.190 1.190 19 C 0.094 3.906 20 C -0.129 4.129 21 C -0.131 4.131 22 C -0.176 4.176 23 C -0.138 4.138 24 C -0.129 4.129 25 C -0.385 4.385 26 S 0.407 5.593 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.154 0.846 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.155 13.670 -9.251 16.805 hybrid contribution -0.026 -1.289 1.297 1.828 sum 3.130 12.381 -7.954 15.045 Atomic orbital electron populations 1.21842 0.92458 1.03499 1.01379 1.19112 0.96447 0.93280 0.89722 1.22032 1.01474 0.94779 1.02720 1.22362 1.01971 1.01944 0.94657 1.27347 1.02096 0.93558 1.01569 1.67462 1.19523 1.10462 1.14348 1.21090 0.99724 0.97935 0.91600 1.17538 0.79266 0.82494 0.86001 1.90650 1.50755 1.79925 1.20572 1.40745 1.51071 1.11061 1.07385 1.18665 1.25082 0.83358 1.22916 0.89787 1.25399 0.91477 0.96016 0.98519 1.70306 1.03742 1.40743 1.28952 0.86594 0.78096 0.80630 0.83227 1.19576 1.21627 1.18976 1.18257 0.92056 0.93375 0.86878 1.20734 0.97600 1.01287 0.93283 1.20536 0.95976 1.01376 0.95197 1.20700 0.93661 1.04467 0.98749 1.20822 0.98357 1.00727 0.93886 1.21340 0.96022 0.99904 0.95665 1.26506 1.08033 0.96986 1.07011 1.82473 1.49013 1.13250 1.14589 0.92933 0.92132 0.90878 0.92044 0.91038 0.92111 0.88795 0.92604 0.92839 0.91935 0.88563 0.87683 0.87797 0.87535 0.84626 0.80231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 8.40 37.16 0.31 -1.34 16 2 C 0.02 0.22 0.99 -155.66 -0.15 0.07 16 3 C -0.15 -1.41 7.44 37.16 0.28 -1.13 16 4 C -0.15 -1.76 7.41 37.16 0.28 -1.48 16 5 C 0.03 0.54 5.65 -13.61 -0.08 0.46 16 6 N -0.40 -7.73 6.05 -8.52 -0.05 -7.78 16 7 C 0.03 0.67 5.91 -84.53 -0.50 0.17 16 8 C 0.56 14.62 7.25 -12.65 -0.09 14.53 16 9 O -0.54 -15.46 16.41 5.23 0.09 -15.38 16 10 N -0.39 -10.19 2.61 -60.20 -0.16 -10.35 16 11 C -0.38 -10.54 8.04 -15.00 -0.12 -10.66 16 12 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 13 C 0.10 2.79 4.83 -17.48 -0.08 2.71 16 14 N -0.81 -22.46 13.34 55.49 0.74 -21.72 16 15 Si 0.89 21.79 29.69 -169.99 -5.05 16.74 16 16 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 C 0.19 4.30 4.13 -83.72 -0.35 3.95 16 20 C -0.11 -2.15 6.53 -39.36 -0.26 -2.40 16 21 C -0.11 -1.83 6.89 -39.61 -0.27 -2.11 16 22 C -0.16 -2.49 8.93 -39.53 -0.35 -2.84 16 23 C -0.12 -2.15 10.04 -39.61 -0.40 -2.55 16 24 C -0.11 -2.43 9.56 -39.36 -0.38 -2.81 16 25 C -0.24 -4.42 10.63 29.69 0.32 -4.11 16 26 S 0.15 2.05 21.28 -107.50 -2.29 -0.24 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.09 8.04 -51.93 -0.42 0.67 16 30 H 0.06 0.54 7.94 -51.93 -0.41 0.13 16 31 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 32 H 0.06 0.55 7.88 -51.93 -0.41 0.14 16 33 H 0.09 1.23 3.72 -51.93 -0.19 1.03 16 34 H 0.05 0.52 7.99 -51.93 -0.41 0.10 16 35 H 0.05 0.65 7.86 -51.93 -0.41 0.24 16 36 H 0.27 7.08 8.32 -40.82 -0.34 6.74 16 37 H 0.10 1.96 7.71 -52.49 -0.40 1.56 16 38 H 0.11 1.45 7.42 -52.48 -0.39 1.06 16 39 H 0.10 1.35 8.06 -52.49 -0.42 0.92 16 40 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.14 3.39 7.47 -52.48 -0.39 3.00 16 42 H 0.18 3.12 8.04 -52.49 -0.42 2.69 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -31.02 354.30 -8.76 -39.78 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.53 Total: 3.14 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -1.85 Total: -9.53 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.53 Total: -39.85 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.09 Total: -15.38 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.05 Total: 16.74 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.29 Total: -0.24 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.02 -8.76 -39.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264010021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.596 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds