Wall clock time and date at job start Tue Mar 31 2020 15:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08996 * 109.47623 * 2 1 4 4 C 1.53002 * 109.47375 * 240.00006 * 2 1 3 5 5 N 1.46500 * 109.46962 * 64.99661 * 4 2 1 6 6 C 1.46500 * 120.00316 * 270.00276 * 5 4 2 7 7 C 1.34773 * 119.99781 * 90.00415 * 5 4 2 8 8 O 1.21613 * 120.00011 * 355.01764 * 7 5 4 9 9 C 1.47432 * 120.00013 * 175.01517 * 7 5 4 10 10 C 1.39220 * 120.28453 * 317.49027 * 9 7 5 11 11 C 1.38219 * 120.09278 * 180.02562 * 10 9 7 12 12 C 1.38825 * 120.67767 * 0.02562 * 11 10 9 13 13 C 1.37596 * 120.56998 * 0.02562 * 12 11 10 14 14 C 1.40714 * 119.88210 * 359.97438 * 13 12 11 15 15 C 1.40888 * 120.33065 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00393 * 153.01683 * 15 14 13 17 17 C 1.40273 * 119.99704 * 333.01847 * 15 14 13 18 18 N 1.30633 * 120.00075 * 345.61916 * 17 15 14 19 19 Si 1.86796 * 120.00161 * 165.62237 * 17 15 14 20 20 H 1.48501 * 109.47300 * 59.99429 * 19 17 15 21 21 H 1.48500 * 109.47356 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47228 * 299.99869 * 19 17 15 23 23 C 1.50709 * 109.47179 * 119.99896 * 2 1 3 24 24 N 1.29024 * 124.91842 * 239.99677 * 23 2 1 25 25 C 1.31774 * 117.12743 * 179.97438 * 24 23 2 26 26 C 1.33647 * 114.50202 * 0.02562 * 25 24 23 27 27 S 1.70972 * 124.91457 * 59.69745 * 23 2 1 28 28 H 1.09005 * 109.47536 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47343 * 300.00234 * 1 2 3 30 30 H 1.09000 * 109.47310 * 59.99824 * 1 2 3 31 31 H 1.09004 * 109.46903 * 305.00026 * 4 2 1 32 32 H 1.08997 * 109.47547 * 185.00316 * 4 2 1 33 33 H 1.09004 * 109.47128 * 266.35774 * 6 5 4 34 34 H 1.08998 * 109.46700 * 26.35293 * 6 5 4 35 35 H 1.08996 * 109.46892 * 146.35480 * 6 5 4 36 36 H 1.07997 * 119.95264 * 0.02562 * 10 9 7 37 37 H 1.07996 * 119.66289 * 180.27612 * 11 10 9 38 38 H 1.07997 * 119.71673 * 179.97438 * 12 11 10 39 39 H 1.08001 * 120.06300 * 179.97438 * 13 12 11 40 40 H 0.97004 * 120.00058 * 180.02562 * 18 17 15 41 41 H 1.08001 * 122.75649 * 180.02562 * 25 24 23 42 42 H 1.07991 * 126.04056 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6523 0.0353 -2.4424 6 6 0.3745 -0.2423 -3.1028 7 6 2.4714 0.9868 -2.9325 8 8 3.4887 1.2805 -2.3343 9 6 2.1341 1.6716 -4.1938 10 6 1.6427 0.9472 -5.2763 11 6 1.3283 1.5931 -6.4571 12 6 1.4974 2.9655 -6.5805 13 6 1.9820 3.7083 -5.5285 14 6 2.3097 3.0750 -4.3154 15 6 2.8062 3.8264 -3.2320 16 1 2.6534 3.4811 -2.2202 17 6 3.4991 5.0231 -3.4675 18 7 3.9302 5.3028 -4.6685 19 14 3.8054 6.2168 -2.0638 20 1 4.6013 5.5436 -1.0062 21 1 4.5531 7.3956 -2.5706 22 1 2.5057 6.6601 -1.4984 23 6 2.0323 -0.7104 1.2305 24 7 2.7772 -0.1769 2.1389 25 6 3.1278 -0.9411 3.1536 26 6 2.6525 -2.1889 3.0979 27 16 1.6915 -2.3379 1.6286 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6053 -1.7198 -1.2951 32 1 3.1263 -0.7995 -1.2056 33 1 0.5290 -0.9652 -3.9039 34 1 -0.3288 -0.6498 -2.3765 35 1 -0.0275 0.6812 -3.5193 36 1 1.5070 -0.1210 -5.1933 37 1 0.9433 1.0250 -7.2910 38 1 1.2471 3.4543 -7.5104 39 1 2.1107 4.7754 -5.6336 40 1 4.4096 6.1302 -4.8313 41 1 3.7484 -0.5880 3.9640 42 1 2.8237 -2.9672 3.8268 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601437310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:02 Heat of formation + Delta-G solvation = 32.990773 kcal Electronic energy + Delta-G solvation = -25691.348803 eV Core-core repulsion = 22149.127395 eV Total energy + Delta-G solvation = -3542.221408 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.88428 -39.24543 -37.11296 -35.75158 -33.93913 -33.32976 -30.14737 -29.75450 -29.33825 -27.55233 -25.83238 -25.42982 -24.81206 -22.26878 -21.28499 -20.78649 -20.10810 -18.58131 -17.79973 -17.26966 -16.27236 -16.01124 -15.48035 -15.36595 -14.98251 -14.58995 -14.32443 -14.19279 -13.71577 -13.43266 -13.10893 -13.00537 -12.70036 -12.61977 -12.46404 -12.06383 -12.02211 -11.66184 -11.63521 -11.43833 -11.25658 -11.13105 -10.95714 -10.86461 -10.79138 -10.49245 -9.95500 -9.65538 -9.62355 -9.48979 -9.23738 -8.99488 -8.64517 -8.09197 -7.52823 -7.45573 -6.83124 -4.41324 0.63567 1.28218 1.67563 2.47374 2.79864 2.83595 3.07571 3.13325 3.24965 3.52510 3.94022 3.97251 4.18128 4.60053 4.88069 4.99325 5.03448 5.07336 5.35725 5.39625 5.45699 5.53811 5.59575 5.70760 5.76997 5.87967 6.02281 6.08262 6.10677 6.16164 6.22723 6.25651 6.36291 6.57469 6.98161 7.06996 7.14368 7.22498 7.46800 7.69456 7.73380 7.85466 7.98647 8.11681 8.22052 8.56547 8.78852 8.86337 9.24445 10.09955 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.012976 B = 0.003918 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.237191 B = 7145.694425 C = 8839.243771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.039 4.039 3 H 0.111 0.889 4 C 0.131 3.869 5 N -0.626 5.626 6 C 0.082 3.918 7 C 0.578 3.422 8 O -0.531 6.531 9 C -0.261 4.261 10 C -0.056 4.056 11 C -0.252 4.252 12 C -0.093 4.093 13 C -0.159 4.159 14 C 0.147 3.853 15 C -0.423 4.423 16 H 0.084 0.916 17 C 0.076 3.924 18 N -0.783 5.783 19 Si 0.911 3.089 20 H -0.261 1.261 21 H -0.277 1.277 22 H -0.262 1.262 23 C 0.077 3.923 24 N -0.473 5.473 25 C 0.042 3.958 26 C -0.270 4.270 27 S 0.109 5.891 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.284 0.716 41 H 0.174 0.826 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.353 -12.185 9.280 16.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.062 4.062 3 H 0.129 0.871 4 C 0.006 3.994 5 N -0.362 5.362 6 C -0.061 4.061 7 C 0.371 3.629 8 O -0.407 6.407 9 C -0.266 4.266 10 C -0.075 4.075 11 C -0.272 4.272 12 C -0.112 4.112 13 C -0.178 4.178 14 C 0.143 3.857 15 C -0.451 4.451 16 H 0.102 0.898 17 C -0.143 4.143 18 N -0.408 5.408 19 Si 0.734 3.266 20 H -0.185 1.185 21 H -0.202 1.202 22 H -0.187 1.187 23 C -0.202 4.202 24 N -0.187 5.187 25 C -0.109 4.109 26 C -0.409 4.409 27 S 0.363 5.637 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.139 0.861 40 H 0.095 0.905 41 H 0.191 0.809 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.045 -12.078 8.952 16.603 hybrid contribution 0.857 0.721 1.330 1.739 sum -6.188 -11.358 10.282 16.523 Atomic orbital electron populations 1.22003 0.93095 1.01961 1.03355 1.20399 0.96332 1.01440 0.88042 0.87078 1.21267 1.01406 0.93295 0.83409 1.47858 1.20775 1.39415 1.28112 1.21932 0.85000 1.02198 0.96933 1.18621 0.82184 0.77158 0.84951 1.90719 1.26242 1.62888 1.60823 1.19321 1.19117 0.94215 0.93950 1.20725 0.96490 0.97045 0.93247 1.20248 1.14408 0.94781 0.97731 1.20785 0.99012 0.94019 0.97345 1.21367 1.02831 0.99850 0.93783 1.17376 0.86841 0.89003 0.92503 1.19685 1.27753 1.02689 0.94959 0.89781 1.26014 0.93510 0.98059 0.96741 1.69716 1.25443 1.23319 1.22272 0.86304 0.79631 0.78975 0.81642 1.18523 1.20192 1.18656 1.27174 0.98589 0.94628 0.99817 1.66323 1.13037 1.36948 1.02352 1.21857 1.01512 0.89714 0.97792 1.27048 1.07830 1.02622 1.03424 1.83861 1.48149 1.14239 1.17494 0.92524 0.92252 0.90241 0.91097 0.89868 0.93227 0.91987 0.90176 0.88755 0.89259 0.89251 0.86068 0.90503 0.80877 0.80757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.07 37.15 0.30 -1.41 16 2 C -0.04 -0.56 3.02 -91.77 -0.28 -0.84 16 3 H 0.11 2.04 8.14 -51.93 -0.42 1.61 16 4 C 0.13 1.98 4.71 -4.04 -0.02 1.96 16 5 N -0.63 -10.82 2.70 -182.85 -0.49 -11.31 16 6 C 0.08 1.13 7.93 59.85 0.47 1.60 16 7 C 0.58 13.16 6.72 -12.52 -0.08 13.07 16 8 O -0.53 -14.08 14.94 5.27 0.08 -14.00 16 9 C -0.26 -6.25 4.98 -104.37 -0.52 -6.77 16 10 C -0.06 -1.19 7.89 -39.22 -0.31 -1.50 16 11 C -0.25 -5.30 10.03 -39.37 -0.39 -5.69 16 12 C -0.09 -2.08 10.01 -39.60 -0.40 -2.47 16 13 C -0.16 -4.01 8.67 -38.88 -0.34 -4.34 16 14 C 0.15 3.87 5.58 -106.54 -0.59 3.28 16 15 C -0.42 -11.49 7.85 -37.82 -0.30 -11.79 16 16 H 0.08 2.34 6.75 -52.49 -0.35 1.99 16 17 C 0.08 1.96 5.20 -17.30 -0.09 1.87 16 18 N -0.78 -20.26 10.92 55.56 0.61 -19.65 16 19 Si 0.91 19.53 29.58 -169.99 -5.03 14.50 16 20 H -0.26 -5.79 7.11 56.52 0.40 -5.38 16 21 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 23 C 0.08 1.07 6.03 -13.45 -0.08 0.99 16 24 N -0.47 -7.33 10.54 -11.86 -0.13 -7.45 16 25 C 0.04 0.51 11.35 -19.19 -0.22 0.29 16 26 C -0.27 -2.70 11.37 29.12 0.33 -2.37 16 27 S 0.11 1.15 22.67 -107.50 -2.44 -1.29 16 28 H 0.06 0.54 7.92 -51.93 -0.41 0.13 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.96 5.96 -51.93 -0.31 0.65 16 31 H 0.07 0.84 8.04 -51.93 -0.42 0.42 16 32 H 0.08 1.45 7.49 -51.93 -0.39 1.06 16 33 H 0.05 0.62 6.72 -51.93 -0.35 0.27 16 34 H 0.06 0.65 6.15 -51.93 -0.32 0.33 16 35 H 0.08 1.23 6.61 -51.93 -0.34 0.88 16 36 H 0.09 1.71 6.00 -52.49 -0.32 1.40 16 37 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.12 3.13 6.22 -52.49 -0.33 2.80 16 40 H 0.28 6.67 8.29 -40.82 -0.34 6.33 16 41 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 356.74 15.07 5.38 5.38 Total: -1.00 -31.25 356.74 -9.74 -41.00 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.21 Total: 6.96 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -2.51 Total: -14.12 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: -0.01 Total: -38.42 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.08 Total: -14.00 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.44 Total: -1.29 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.25 -9.74 -41.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601437310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.986 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds