Wall clock time and date at job start Tue Mar 31 2020 15:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48506 * 109.46742 * 239.99613 * 3 2 1 5 5 H 1.48505 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47336 * 119.99641 * 3 2 1 7 7 C 1.39950 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00182 * 197.72226 * 7 2 1 9 9 C 1.41399 * 119.99773 * 17.71280 * 7 2 1 10 10 C 1.40715 * 120.24183 * 24.53568 * 9 7 2 11 11 C 1.37620 * 119.74131 * 180.22985 * 10 9 7 12 12 C 1.38639 * 120.24897 * 359.51904 * 11 10 9 13 13 C 1.50706 * 119.74839 * 180.23652 * 12 11 10 14 14 S 1.80997 * 109.47131 * 89.99892 * 13 12 11 15 15 C 1.76206 * 99.99593 * 179.97438 * 14 13 12 16 16 N 1.31539 * 126.45653 * 359.68871 * 15 14 13 17 17 N 1.28412 * 110.50353 * 179.81703 * 16 15 14 18 18 N 1.28906 * 110.34121 * 0.46081 * 17 16 15 19 19 N 1.35394 * 126.44904 * 180.02562 * 15 14 13 20 20 C 1.46505 * 127.38838 * 359.96078 * 19 15 14 21 21 C 1.54263 * 110.03272 * 237.91051 * 20 19 15 22 22 C 1.54968 * 104.15977 * 217.13505 * 21 20 19 23 23 C 1.54885 * 102.77609 * 37.89006 * 22 21 20 24 24 C 1.53870 * 110.03249 * 120.69339 * 20 19 15 25 25 C 1.38635 * 120.49790 * 0.25481 * 12 11 10 26 26 C 1.37609 * 120.25139 * 359.97438 * 25 12 11 27 27 H 0.97005 * 119.99803 * 0.02562 * 1 2 3 28 28 H 1.07993 * 120.13277 * 0.02722 * 10 9 7 29 29 H 1.08000 * 119.87472 * 179.79709 * 11 10 9 30 30 H 1.08994 * 109.46571 * 210.00074 * 13 12 11 31 31 H 1.09001 * 109.46517 * 329.99490 * 13 12 11 32 32 H 1.09000 * 110.01451 * 359.30284 * 20 19 15 33 33 H 1.08999 * 110.49275 * 335.78503 * 21 20 19 34 34 H 1.09007 * 110.48400 * 98.42728 * 21 20 19 35 35 H 1.09001 * 110.72115 * 279.57617 * 22 21 20 36 36 H 1.09002 * 110.92185 * 156.30142 * 22 21 20 37 37 H 1.08997 * 110.48437 * 203.40509 * 23 22 21 38 38 H 1.08997 * 110.59738 * 80.81709 * 23 22 21 39 39 H 1.09000 * 110.03181 * 238.57231 * 24 20 19 40 40 H 1.09005 * 110.03656 * 359.95110 * 24 20 19 41 41 H 1.08002 * 119.87213 * 180.02562 * 25 12 11 42 42 H 1.08000 * 120.12882 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6962 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0959 1.6964 1.2124 7 6 2.0080 -1.2120 0.0005 8 1 3.0495 -1.2341 0.2852 9 6 1.3512 -2.4077 -0.3715 10 6 0.2200 -2.3644 -1.2074 11 6 -0.4141 -3.5340 -1.5592 12 6 0.0636 -4.7524 -1.1014 13 6 -0.6364 -6.0267 -1.4980 14 16 0.0866 -6.6601 -3.0316 15 6 -0.8906 -8.1092 -3.2549 16 7 -1.8529 -8.5325 -2.4642 17 7 -2.3639 -9.6191 -2.9195 18 7 -1.7716 -9.9706 -4.0091 19 7 -0.7882 -9.0001 -4.2693 20 6 0.1462 -8.9607 -5.3969 21 6 -0.6326 -8.9514 -6.7285 22 6 0.2278 -9.8242 -7.6769 23 6 0.7369 -10.9480 -6.7405 24 6 1.0170 -10.2293 -5.4046 25 6 1.1800 -4.8072 -0.2813 26 6 1.8271 -3.6500 0.0871 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1511 -1.4168 -1.5687 29 1 -1.2844 -3.5030 -2.1979 30 1 -0.5178 -6.7675 -0.7073 31 1 -1.6967 -5.8260 -1.6518 32 1 0.7776 -8.0749 -5.3275 33 1 -1.6205 -9.3924 -6.5958 34 1 -0.7161 -7.9355 -7.1146 35 1 1.0618 -9.2494 -8.0795 36 1 -0.3789 -10.2379 -8.4826 37 1 1.6522 -11.3885 -7.1359 38 1 -0.0278 -11.7134 -6.6090 39 1 2.0709 -9.9591 -5.3396 40 1 0.7449 -10.8740 -4.5687 41 1 1.5437 -5.7619 0.0691 42 1 2.6969 -3.6950 0.7257 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342217543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:28 Heat of formation + Delta-G solvation = 112.315558 kcal Electronic energy + Delta-G solvation = -24230.333074 eV Core-core repulsion = 20723.844198 eV Total energy + Delta-G solvation = -3506.488876 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.121 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.78158 -38.68157 -37.79921 -34.20836 -33.98560 -32.13769 -31.36305 -29.47996 -29.24189 -28.64660 -27.72705 -24.56197 -23.69932 -23.21868 -21.18926 -21.16576 -20.72231 -20.13502 -18.10452 -17.48460 -16.87613 -16.40402 -16.04673 -15.49280 -14.88019 -14.70040 -14.45914 -14.10636 -13.93332 -13.83249 -13.37109 -12.80359 -12.67877 -12.49061 -12.40014 -12.31347 -12.11999 -11.77829 -11.63347 -11.56246 -11.29124 -11.25122 -11.19867 -11.06174 -11.01287 -10.88888 -10.80072 -10.60918 -10.36001 -10.30898 -9.84510 -9.57180 -9.28823 -7.82419 -7.63435 -7.50247 -6.96677 -4.54250 0.89613 0.95922 2.06824 2.09761 2.32521 2.77484 2.92206 2.96855 2.98868 3.18018 3.78148 3.87795 4.01250 4.34867 4.44779 4.54194 4.76272 4.86066 4.92096 4.97913 5.16679 5.32135 5.36080 5.45484 5.48442 5.49124 5.50677 5.57759 5.60031 5.67597 5.70998 5.89039 6.13224 6.16456 6.16701 6.23182 6.78905 6.87542 7.07153 7.15464 7.41598 7.63688 7.85880 7.89222 8.08845 8.43506 8.50897 8.67939 8.75976 9.96413 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.022059 B = 0.002333 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.025861 B =12001.169763 C =12552.913360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.449 4.449 8 H 0.082 0.918 9 C 0.120 3.880 10 C -0.169 4.169 11 C -0.074 4.074 12 C -0.226 4.226 13 C -0.017 4.017 14 S -0.007 6.007 15 C 0.221 3.779 16 N -0.340 5.340 17 N -0.040 5.040 18 N -0.094 5.094 19 N -0.364 5.364 20 C 0.147 3.853 21 C -0.132 4.132 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.131 4.131 25 C -0.061 4.061 26 C -0.228 4.228 27 H 0.285 0.715 28 H 0.120 0.880 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 -12.300 -12.357 17.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.479 4.479 8 H 0.100 0.900 9 C 0.116 3.884 10 C -0.189 4.189 11 C -0.094 4.094 12 C -0.232 4.232 13 C -0.163 4.163 14 S 0.225 5.775 15 C -0.163 4.163 16 N -0.197 5.197 17 N -0.036 5.036 18 N -0.081 5.081 19 N -0.164 5.164 20 C 0.044 3.956 21 C -0.170 4.170 22 C -0.158 4.158 23 C -0.159 4.159 24 C -0.170 4.170 25 C -0.082 4.082 26 C -0.248 4.248 27 H 0.096 0.904 28 H 0.138 0.862 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.136 0.864 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.810 -12.739 -12.690 18.072 hybrid contribution -0.007 0.749 0.435 0.866 sum 1.802 -11.990 -12.255 17.239 Atomic orbital electron populations 1.69808 1.07717 1.29880 1.33032 1.26004 0.94798 1.01672 0.92068 0.86302 0.80182 0.79785 0.80197 1.18611 1.20151 1.18796 1.19710 0.98243 0.91225 1.38679 0.90036 1.17707 0.90798 0.92096 0.87779 1.21309 0.99361 0.96798 1.01387 1.20558 0.98036 0.92387 0.98464 1.18357 1.02887 0.90875 1.11056 1.22338 1.01580 0.99204 0.93209 1.86498 1.41820 1.12519 1.36676 1.28408 0.99635 0.99482 0.88728 1.74946 1.10645 1.08480 1.25625 1.77827 1.17230 1.05791 1.02739 1.82318 1.00882 1.11435 1.13495 1.51808 1.27620 1.16939 1.19997 1.22448 0.88599 1.01535 0.83000 1.22783 0.99929 1.01781 0.92535 1.22484 0.99390 0.96522 0.97453 1.22345 1.01662 0.97927 0.93974 1.22516 0.99627 0.95121 0.99716 1.20412 0.94351 0.96808 0.96584 1.20960 1.03885 0.92689 1.07278 0.90382 0.86191 0.89031 0.89195 0.89130 0.86410 0.89839 0.90049 0.90698 0.90598 0.90853 0.90934 0.89737 0.90419 0.89003 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.85 10.95 55.55 0.61 -18.24 16 2 C 0.07 1.74 5.14 -17.34 -0.09 1.65 16 3 Si 0.91 17.35 29.59 -169.99 -5.03 12.32 16 4 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 5 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 7 C -0.45 -11.06 9.06 -37.74 -0.34 -11.40 16 8 H 0.08 1.91 7.91 -52.49 -0.41 1.50 16 9 C 0.12 2.96 5.57 -106.82 -0.60 2.37 16 10 C -0.17 -4.06 8.70 -38.87 -0.34 -4.40 16 11 C -0.07 -1.59 9.67 -39.66 -0.38 -1.97 16 12 C -0.23 -4.50 5.16 -104.32 -0.54 -5.03 16 13 C -0.02 -0.29 5.35 36.01 0.19 -0.09 16 14 S -0.01 -0.10 21.45 -107.50 -2.31 -2.41 16 15 C 0.22 3.44 8.15 -89.18 -0.73 2.71 16 16 N -0.34 -5.98 11.57 30.50 0.35 -5.63 16 17 N -0.04 -0.70 13.38 60.35 0.81 0.11 16 18 N -0.09 -1.46 13.55 60.35 0.82 -0.65 16 19 N -0.36 -4.99 3.24 -53.72 -0.17 -5.16 16 20 C 0.15 1.46 3.80 -66.81 -0.25 1.20 16 21 C -0.13 -1.10 6.53 -25.03 -0.16 -1.27 16 22 C -0.12 -0.75 6.91 -24.70 -0.17 -0.92 16 23 C -0.12 -0.81 6.83 -25.07 -0.17 -0.98 16 24 C -0.13 -1.10 6.57 -25.62 -0.17 -1.26 16 25 C -0.06 -1.26 9.67 -39.66 -0.38 -1.64 16 26 C -0.23 -5.17 9.80 -38.88 -0.38 -5.55 16 27 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 28 H 0.12 2.98 6.16 -52.49 -0.32 2.66 16 29 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.09 1.49 8.08 -51.92 -0.42 1.07 16 31 H 0.09 1.53 8.08 -51.92 -0.42 1.11 16 32 H 0.12 1.08 7.36 -51.93 -0.38 0.70 16 33 H 0.08 0.83 7.78 -51.93 -0.40 0.43 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.79 7.88 -51.93 -0.41 0.38 16 41 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 42 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 366.53 15.07 5.52 5.52 Total: -1.00 -26.57 366.53 -9.63 -36.20 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -5.71 Total: 4.52 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: -4.51 Total: -26.59 kcal Atomic # 7 Polarization: -31.98 SS G_CDS: 2.41 Total: -29.57 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -2.31 Total: -2.41 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -26.57 -9.63 -36.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342217543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.512 kcal (2) G-P(sol) polarization free energy of solvation -26.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds