Wall clock time and date at job start Tue Mar 31 2020 15:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86800 * 120.00046 * 2 1 4 4 H 1.48499 * 109.46964 * 239.99979 * 3 2 1 5 5 H 1.48499 * 109.46875 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46848 * 119.99876 * 3 2 1 7 7 C 1.37877 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99996 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00553 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47088 * 179.97438 * 9 7 2 11 11 C 1.53046 * 109.45572 * 174.99756 * 10 9 7 12 12 C 1.53191 * 109.30947 * 181.38274 * 11 10 9 13 13 N 1.46925 * 108.89497 * 305.29695 * 12 11 10 14 14 C 1.34780 * 120.62886 * 233.68294 * 13 12 11 15 15 O 1.21630 * 119.99674 * 356.28390 * 14 13 12 16 16 C 1.47264 * 120.00131 * 176.28656 * 14 13 12 17 17 C 1.36767 * 126.93721 * 42.52796 * 16 14 13 18 18 N 1.34660 * 108.39409 * 179.97438 * 17 16 14 19 19 H 0.97001 * 124.85418 * 180.02562 * 18 17 16 20 20 C 1.36451 * 110.29744 * 0.02562 * 18 17 16 21 21 C 1.50696 * 125.56954 * 180.02562 * 20 18 17 22 22 F 1.39895 * 109.47715 * 359.96858 * 21 20 18 23 23 F 1.39898 * 109.47283 * 119.97414 * 21 20 18 24 24 F 1.39905 * 109.46866 * 239.97013 * 21 20 18 25 25 C 1.34485 * 108.85476 * 359.74453 * 20 18 17 26 26 C 1.47200 * 118.55603 * 53.53659 * 13 12 11 27 27 C 1.53040 * 109.45803 * 295.06400 * 10 9 7 28 28 H 0.96998 * 119.99749 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47057 * 59.99137 * 9 7 2 30 30 H 1.09006 * 109.46591 * 299.99435 * 9 7 2 31 31 H 1.08995 * 109.45908 * 55.02518 * 10 9 7 32 32 H 1.08999 * 109.49583 * 61.43300 * 11 10 9 33 33 H 1.09001 * 109.49727 * 301.33786 * 11 10 9 34 34 H 1.09003 * 109.58494 * 65.15316 * 12 11 10 35 35 H 1.08998 * 109.58692 * 185.43503 * 12 11 10 36 36 H 1.07993 * 125.80789 * 359.97438 * 17 16 14 37 37 H 1.08003 * 126.83335 * 180.25920 * 25 20 18 38 38 H 1.09004 * 109.53050 * 186.67399 * 26 13 12 39 39 H 1.09001 * 109.67746 * 66.37431 * 26 13 12 40 40 H 1.09003 * 109.49646 * 298.56508 * 27 10 9 41 41 H 1.09000 * 109.49505 * 58.66677 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4840 -4.9838 0.1264 12 6 2.4844 -6.1434 0.1608 13 7 3.3508 -6.0596 -1.0228 14 6 3.4902 -7.1162 -1.8480 15 8 2.9499 -8.1724 -1.5800 16 6 4.2966 -6.9917 -3.0739 17 6 5.5061 -6.3663 -3.2021 18 7 5.9080 -6.4767 -4.4826 19 1 6.7365 -6.1172 -4.8365 20 6 4.9832 -7.1666 -5.2111 21 6 5.0867 -7.4882 -6.6797 22 9 6.2820 -6.9686 -7.1879 23 9 5.0693 -8.8759 -6.8556 24 9 4.0044 -6.9185 -7.3592 25 6 3.9674 -7.5180 -4.4029 26 6 4.0593 -4.7969 -1.2883 27 6 3.0413 -3.6524 -1.3066 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8904 31 1 2.9291 -3.5553 0.8426 32 1 0.8183 -5.1029 -0.7284 33 1 0.8990 -4.9805 1.0461 34 1 3.0916 -6.0755 1.0635 35 1 1.9458 -7.0910 0.1531 36 1 6.0471 -5.8686 -2.4109 37 1 3.0840 -8.0752 -4.6781 38 1 4.5599 -4.8562 -2.2548 39 1 4.7964 -4.6180 -0.5055 40 1 2.3608 -3.7841 -2.1479 41 1 3.5646 -2.7015 -1.4067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515654607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:08 Heat of formation + Delta-G solvation = -148.923328 kcal Electronic energy + Delta-G solvation = -28195.138282 eV Core-core repulsion = 23660.418875 eV Total energy + Delta-G solvation = -4534.719406 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.130 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -50.55142 -48.12174 -47.99683 -41.78994 -39.58636 -37.22429 -34.03719 -32.37565 -31.59458 -31.32935 -30.30430 -28.07787 -25.98868 -24.93405 -23.06712 -22.88672 -21.22320 -21.19195 -20.28361 -19.48904 -18.89389 -18.66206 -18.23144 -16.86814 -16.32847 -16.10723 -15.58541 -15.28345 -14.93203 -14.89961 -14.57896 -14.47908 -14.37648 -14.23057 -14.17210 -14.07849 -13.78532 -13.65288 -13.21071 -13.08999 -12.77840 -12.73305 -12.34189 -12.18243 -11.80214 -11.20568 -11.02128 -10.82084 -10.70994 -10.48949 -10.15430 -9.89945 -9.67488 -9.39905 -9.29015 -9.02980 -8.90899 -8.38488 -8.33605 -6.02230 -4.04563 1.32982 1.74482 1.97469 2.59919 2.94247 3.29081 3.29903 3.34945 3.35644 3.42413 3.75589 3.99254 4.42324 4.48504 4.58080 4.94362 5.04400 5.17289 5.32257 5.40098 5.44528 5.47053 5.53679 5.65803 5.74865 5.97745 6.05685 6.06043 6.22106 6.35944 6.38423 6.50980 6.67680 6.76634 6.93966 6.97793 7.08870 7.56602 7.64354 7.79689 7.97502 8.30425 8.39356 9.01788 9.59183 11.08992 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.014077 B = 0.002859 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.632521 B = 9790.460769 C =10987.306587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.130 4.130 12 C 0.114 3.886 13 N -0.599 5.599 14 C 0.589 3.411 15 O -0.547 6.547 16 C -0.214 4.214 17 C 0.080 3.920 18 N -0.529 5.529 19 H 0.425 0.575 20 C -0.097 4.097 21 C 0.544 3.456 22 F -0.182 7.182 23 F -0.167 7.167 24 F -0.166 7.166 25 C -0.063 4.063 26 C 0.093 3.907 27 C -0.118 4.118 28 H 0.261 0.739 29 H 0.015 0.985 30 H 0.016 0.984 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.191 0.809 37 H 0.160 0.840 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.867 -14.347 -10.129 22.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.099 4.099 11 C -0.168 4.168 12 C -0.008 4.008 13 N -0.332 5.332 14 C 0.377 3.623 15 O -0.425 6.425 16 C -0.224 4.224 17 C -0.057 4.057 18 N -0.124 5.124 19 H 0.263 0.737 20 C -0.207 4.207 21 C 0.489 3.511 22 F -0.163 7.163 23 F -0.149 7.149 24 F -0.147 7.147 25 C -0.090 4.090 26 C -0.029 4.029 27 C -0.156 4.156 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.208 0.792 37 H 0.178 0.822 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.537 -14.750 -10.105 22.426 hybrid contribution 0.835 1.320 -0.408 1.614 sum 14.371 -13.430 -10.514 22.303 Atomic orbital electron populations 1.69955 1.06051 1.26669 1.50735 1.25025 0.94796 0.99158 0.95466 0.86712 0.79622 0.83456 0.78507 1.20326 1.21359 1.20303 1.21192 0.92838 0.90984 1.50559 0.92692 1.19120 0.93619 0.90981 0.97219 1.21192 0.97996 0.94691 0.96039 1.22035 0.97651 0.94782 1.02331 1.21675 0.92516 1.00374 0.86244 1.48080 1.46558 1.12521 1.25997 1.17278 0.80048 0.83328 0.81643 1.90769 1.49516 1.27699 1.74518 1.20428 0.97997 1.09222 0.94779 1.22281 0.96697 1.00621 0.86122 1.41199 1.19304 1.43801 1.08126 0.73689 1.19745 0.97122 1.12300 0.91526 1.17238 0.73795 0.74785 0.85246 1.93179 1.47258 1.86810 1.89075 1.93258 1.96087 1.29542 1.95969 1.93273 1.55215 1.84638 1.81565 1.21775 0.97713 0.99101 0.90362 1.22274 0.95602 0.83760 1.01302 1.21888 0.97624 0.96980 0.99158 0.92964 0.96637 0.96591 0.92360 0.92012 0.91053 0.91737 0.89589 0.79229 0.82236 0.89902 0.91437 0.92197 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -13.71 8.39 -34.44 -0.29 -14.00 16 8 H 0.05 1.39 7.06 -52.48 -0.37 1.01 16 9 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 10 C -0.08 -1.49 2.10 -90.57 -0.19 -1.69 16 11 C -0.13 -2.12 5.36 -26.61 -0.14 -2.27 16 12 C 0.11 1.64 6.41 -3.71 -0.02 1.62 16 13 N -0.60 -8.39 2.98 -173.87 -0.52 -8.91 16 14 C 0.59 8.76 7.63 -12.59 -0.10 8.66 16 15 O -0.55 -9.93 16.53 5.25 0.09 -9.85 16 16 C -0.21 -2.56 5.54 -103.35 -0.57 -3.13 16 17 C 0.08 0.66 9.50 -16.84 -0.16 0.50 16 18 N -0.53 -3.84 5.80 -9.12 -0.05 -3.89 16 19 H 0.42 1.80 8.65 -40.82 -0.35 1.45 16 20 C -0.10 -0.92 6.40 -81.87 -0.52 -1.44 16 21 C 0.54 4.91 3.47 36.00 0.12 5.03 16 22 F -0.18 -1.50 16.91 2.25 0.04 -1.46 16 23 F -0.17 -1.60 17.30 2.25 0.04 -1.56 16 24 F -0.17 -1.66 17.30 2.25 0.04 -1.62 16 25 C -0.06 -0.72 11.01 -37.50 -0.41 -1.13 16 26 C 0.09 1.15 5.71 -3.56 -0.02 1.13 16 27 C -0.12 -1.94 5.19 -26.61 -0.14 -2.08 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.29 7.02 -51.93 -0.36 0.92 16 36 H 0.19 1.01 7.00 -52.49 -0.37 0.65 16 37 H 0.16 1.72 8.06 -52.48 -0.42 1.29 16 38 H 0.08 0.84 4.17 -51.93 -0.22 0.63 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.08 1.45 6.91 -51.93 -0.36 1.09 16 LS Contribution 349.90 15.07 5.27 5.27 Total: -1.00 -32.45 349.90 -7.02 -39.47 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -4.97 Total: -0.99 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -2.67 Total: -6.76 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.16 Total: -38.35 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.12 Total: -4.65 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.45 -7.02 -39.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515654607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.453 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds