Wall clock time and date at job start Tue Mar 31 2020 15:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00264 * 2 1 4 4 H 1.48496 * 109.47319 * 270.00394 * 3 2 1 5 5 H 1.48500 * 109.46883 * 30.00615 * 3 2 1 6 6 H 1.48501 * 109.47333 * 150.00309 * 3 2 1 7 7 C 1.38817 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99923 * 169.23012 * 7 2 1 9 9 N 1.36940 * 119.99730 * 349.23765 * 7 2 1 10 10 C 1.47167 * 120.98985 * 328.37974 * 9 7 2 11 11 C 1.53294 * 108.41434 * 230.55297 * 10 9 7 12 12 O 1.42962 * 109.22041 * 307.71958 * 11 10 9 13 13 C 1.42958 * 114.17164 * 62.58125 * 12 11 10 14 14 C 1.47149 * 120.98152 * 148.46454 * 9 7 2 15 15 H 1.08996 * 109.68001 * 249.18812 * 14 9 7 16 16 C 1.52997 * 109.68401 * 9.71053 * 14 9 7 17 17 N 1.46506 * 109.46536 * 298.64470 * 16 14 9 18 18 C 1.34780 * 119.99685 * 180.02562 * 17 16 14 19 19 O 1.21572 * 120.00216 * 359.97438 * 18 17 16 20 20 C 1.47714 * 120.00087 * 180.02562 * 18 17 16 21 21 C 1.41498 * 126.51623 * 179.71347 * 20 18 17 22 22 C 1.35370 * 105.50040 * 180.25776 * 21 20 18 23 23 N 1.35037 * 107.22724 * 359.97438 * 22 21 20 24 24 C 1.46500 * 124.88118 * 180.02562 * 23 22 21 25 25 F 1.39903 * 109.46736 * 210.02881 * 24 23 22 26 26 F 1.39894 * 109.47134 * 330.02351 * 24 23 22 27 27 N 1.28463 * 110.23291 * 0.02562 * 23 22 21 28 28 H 0.97002 * 119.99449 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.64576 * 110.82733 * 10 9 7 30 30 H 1.09004 * 109.68335 * 350.29384 * 10 9 7 31 31 H 1.08994 * 109.51205 * 187.80033 * 11 10 9 32 32 H 1.08994 * 109.51519 * 67.64478 * 11 10 9 33 33 H 1.08994 * 109.51743 * 177.49354 * 13 12 11 34 34 H 1.09001 * 109.55232 * 57.36455 * 13 12 11 35 35 H 1.09004 * 109.47491 * 178.65180 * 16 14 9 36 36 H 1.08991 * 109.47323 * 58.64218 * 16 14 9 37 37 H 0.96991 * 120.00697 * 359.97438 * 17 16 14 38 38 H 1.07998 * 127.25418 * 0.21550 * 21 20 18 39 39 H 1.07997 * 126.38639 * 180.02562 * 22 21 20 40 40 H 1.08999 * 109.47012 * 90.02681 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0760 -1.2103 -0.1753 9 7 1.3436 -2.3778 0.2204 10 6 0.1595 -2.4249 1.0930 11 6 0.3518 -3.5562 2.1095 12 8 0.6772 -4.7627 1.4149 13 6 1.9039 -4.7043 0.6832 14 6 1.7911 -3.6317 -0.4063 15 1 1.0662 -3.9459 -1.1571 16 6 3.1560 -3.4204 -1.0645 17 7 3.0413 -2.4002 -2.1097 18 6 4.1252 -2.0477 -2.8291 19 8 5.1981 -2.5758 -2.6103 20 6 4.0097 -1.0188 -3.8826 21 6 5.0525 -0.5421 -4.7119 22 6 4.4817 0.3892 -5.5115 23 7 3.1758 0.4591 -5.1750 24 6 2.1953 1.3484 -5.8027 25 9 1.2094 1.6879 -4.8700 26 9 2.8364 2.5097 -6.2471 27 7 2.9169 -0.3663 -4.2254 28 1 -0.4849 0.8401 0.0004 29 1 -0.7301 -2.6173 0.4934 30 1 0.0514 -1.4751 1.6169 31 1 -0.5694 -3.6985 2.6744 32 1 1.1621 -3.2990 2.7916 33 1 2.0993 -5.6724 0.2222 34 1 2.7204 -4.4516 1.3596 35 1 3.4951 -4.3572 -1.5068 36 1 3.8746 -3.0920 -0.3136 37 1 2.1853 -1.9791 -2.2846 38 1 6.0862 -0.8548 -4.7074 39 1 4.9780 0.9677 -6.2766 40 1 1.7345 0.8408 -6.6501 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050935921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:39 Heat of formation + Delta-G solvation = -51.566916 kcal Electronic energy + Delta-G solvation = -29462.380028 eV Core-core repulsion = 24951.802274 eV Total energy + Delta-G solvation = -4510.577754 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.57974 -47.66133 -42.57877 -39.12996 -38.17943 -35.29351 -33.56076 -32.92042 -31.55431 -30.75487 -30.32482 -27.34376 -26.86213 -25.33135 -23.40871 -22.84914 -21.65993 -21.49539 -19.78337 -19.47640 -18.80317 -18.45302 -17.58079 -17.14269 -16.31546 -15.90370 -15.72070 -15.40815 -14.90603 -14.57758 -14.46496 -14.43533 -14.25578 -14.03862 -13.89885 -13.66504 -13.56596 -13.39264 -13.14463 -12.81307 -12.54616 -12.42650 -11.85365 -11.53648 -11.01453 -10.89235 -10.82363 -10.69934 -10.38358 -10.22551 -10.01121 -9.76082 -9.60516 -9.42416 -9.24812 -8.96206 -8.62085 -8.26418 -6.66897 -5.85661 -3.34676 1.51698 1.77059 2.14340 3.21350 3.33888 3.41308 3.43553 3.62765 3.78169 3.84179 4.16938 4.40293 4.55904 4.58821 4.85164 5.17140 5.28289 5.34415 5.59508 5.61916 5.72232 5.76053 5.88480 6.04179 6.08790 6.18048 6.23102 6.34833 6.36525 6.43328 6.55090 6.77981 7.06728 7.10260 7.52128 7.72382 7.76147 7.89459 8.24842 8.34658 8.76081 9.11303 9.71652 10.30320 11.21346 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.013230 B = 0.004660 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.841443 B = 6006.663388 C = 7175.545172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.018 3.982 3 Si 0.893 3.107 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.256 4.256 8 H 0.071 0.929 9 N -0.590 5.590 10 C 0.145 3.855 11 C 0.035 3.965 12 O -0.392 6.392 13 C 0.057 3.943 14 C 0.124 3.876 15 H 0.042 0.958 16 C 0.134 3.866 17 N -0.677 5.677 18 C 0.594 3.406 19 O -0.553 6.553 20 C 0.012 3.988 21 C -0.170 4.170 22 C -0.012 4.012 23 N -0.354 5.354 24 C 0.503 3.497 25 F -0.161 7.161 26 F -0.178 7.178 27 N -0.230 5.230 28 H 0.255 0.745 29 H 0.029 0.971 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.422 0.578 38 H 0.168 0.832 39 H 0.187 0.813 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.052 -0.560 -11.471 12.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.723 3.277 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.386 4.386 8 H 0.089 0.911 9 N -0.316 5.316 10 C 0.019 3.981 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.017 3.983 15 H 0.059 0.941 16 C 0.010 3.990 17 N -0.328 5.328 18 C 0.377 3.623 19 O -0.431 6.431 20 C -0.152 4.152 21 C -0.198 4.198 22 C -0.152 4.152 23 N -0.152 5.152 24 C 0.371 3.629 25 F -0.142 7.142 26 F -0.160 7.160 27 N -0.062 5.062 28 H 0.065 0.935 29 H 0.047 0.953 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.261 0.739 38 H 0.186 0.814 39 H 0.204 0.796 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.285 -0.693 -11.103 11.600 hybrid contribution 0.953 1.791 -0.229 2.042 sum 4.238 1.099 -11.332 12.148 Atomic orbital electron populations 1.69967 1.05131 1.25568 1.53329 1.25067 0.95202 0.98021 0.99942 0.86433 0.79284 0.84095 0.77897 1.21242 1.21544 1.20508 1.19139 0.91196 0.83239 1.44990 0.91120 1.44067 1.32544 1.02978 1.52006 1.21403 0.88999 0.96696 0.90984 1.23353 0.99143 0.86610 0.95195 1.87797 1.40701 1.36261 1.66350 1.22857 0.86798 0.98630 0.93969 1.21433 0.93652 0.89453 0.93744 0.94091 1.21244 0.97871 0.90113 0.89735 1.45916 1.12526 1.40135 1.34188 1.16795 0.84466 0.80758 0.80238 1.90741 1.27687 1.55338 1.69285 1.22333 0.90548 1.01216 1.01072 1.21866 1.00907 0.99569 0.97466 1.22807 0.83924 1.03684 1.04739 1.46772 1.09191 1.30605 1.28630 1.21468 0.76462 0.77899 0.87101 1.93218 1.60367 1.92323 1.68277 1.93125 1.82982 1.51020 1.88867 1.73794 1.26549 1.03454 1.02441 0.93526 0.95268 0.89056 0.90271 0.94104 0.89889 0.93455 0.91964 0.91138 0.73851 0.81421 0.79625 0.82096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.87 11.17 55.49 0.62 -24.25 16 2 C 0.02 0.47 5.06 -17.43 -0.09 0.39 16 3 Si 0.89 22.13 29.57 -169.99 -5.03 17.10 16 4 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.26 -6.57 7.09 -15.06 -0.11 -6.67 16 8 H 0.07 1.86 5.84 -52.49 -0.31 1.55 16 9 N -0.59 -13.87 3.03 -164.29 -0.50 -14.37 16 10 C 0.14 3.33 5.38 -3.53 -0.02 3.31 16 11 C 0.03 0.68 6.99 37.31 0.26 0.94 16 12 O -0.39 -7.68 10.74 -35.23 -0.38 -8.06 16 13 C 0.06 1.00 6.29 37.31 0.23 1.24 16 14 C 0.12 2.47 3.20 -67.42 -0.22 2.26 16 15 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 16 C 0.13 2.54 4.44 -4.04 -0.02 2.52 16 17 N -0.68 -13.61 3.81 -61.29 -0.23 -13.85 16 18 C 0.59 11.86 7.83 -12.39 -0.10 11.76 16 19 O -0.55 -11.82 16.93 5.30 0.09 -11.73 16 20 C 0.01 0.22 7.13 -82.76 -0.59 -0.37 16 21 C -0.17 -2.44 10.81 -39.36 -0.43 -2.87 16 22 C -0.01 -0.14 10.98 -17.16 -0.19 -0.33 16 23 N -0.35 -4.96 3.68 -66.62 -0.24 -5.20 16 24 C 0.50 5.36 6.56 59.85 0.39 5.75 16 25 F -0.16 -2.40 17.26 2.25 0.04 -2.36 16 26 F -0.18 -1.80 16.96 2.25 0.04 -1.76 16 27 N -0.23 -4.12 11.41 33.42 0.38 -3.74 16 28 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 2.31 6.36 -51.93 -0.33 1.98 16 31 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.43 7.52 -51.93 -0.39 1.04 16 37 H 0.42 9.19 7.11 -40.82 -0.29 8.90 16 38 H 0.17 2.08 8.06 -52.49 -0.42 1.65 16 39 H 0.19 1.38 8.06 -52.49 -0.42 0.95 16 40 H 0.16 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 343.99 15.07 5.18 5.18 Total: -1.00 -32.72 343.99 -5.57 -38.29 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -4.68 Total: 6.81 kcal Atomic # 6 Polarization: 18.79 SS G_CDS: -0.86 Total: 17.93 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.02 Total: -61.40 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.29 Total: -19.79 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.08 Total: -4.12 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.72 -5.57 -38.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050935921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.276 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds