Wall clock time and date at job start Tue Mar 31 2020 16:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39697 * 125.76750 * 2 1 4 4 C 1.36217 * 107.85426 * 179.72313 * 3 2 1 5 5 N 1.39199 * 126.27185 * 180.24619 * 4 3 2 6 6 C 1.34778 * 119.99916 * 0.16811 * 5 4 3 7 7 O 1.21394 * 120.00040 * 0.02562 * 6 5 4 8 8 C 1.49302 * 120.00179 * 180.02562 * 6 5 4 9 9 O 1.21364 * 119.99604 * 0.02562 * 8 6 5 10 10 N 1.34773 * 120.00389 * 180.02562 * 8 6 5 11 11 C 1.46501 * 120.00354 * 180.02562 * 10 8 6 12 12 C 1.52996 * 109.47396 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.47232 * 179.97438 * 12 11 10 14 14 F 1.39903 * 109.46829 * 299.99797 * 12 11 10 15 15 F 1.39904 * 109.47452 * 59.99033 * 12 11 10 16 16 N 1.35860 * 107.45724 * 0.38932 * 4 3 2 17 17 C 1.46491 * 126.09683 * 179.87697 * 16 4 3 18 18 C 1.50702 * 109.46957 * 269.71194 * 17 16 4 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 N 1.30845 * 125.77106 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47304 * 270.01760 * 1 2 3 28 28 H 1.09004 * 109.47362 * 30.01391 * 1 2 3 29 29 H 1.08996 * 109.47330 * 150.01451 * 1 2 3 30 30 H 1.07999 * 126.07347 * 359.95063 * 3 2 1 31 31 H 0.96995 * 119.99788 * 180.17713 * 5 4 3 32 32 H 0.97003 * 119.99588 * 359.97438 * 10 8 6 33 33 H 1.09005 * 109.46489 * 299.99781 * 11 10 8 34 34 H 1.08993 * 109.46929 * 59.99543 * 11 10 8 35 35 H 1.08995 * 109.47364 * 59.99709 * 13 12 11 36 36 H 1.08999 * 109.47215 * 179.97438 * 13 12 11 37 37 H 1.08996 * 109.46780 * 299.99604 * 13 12 11 38 38 H 1.09004 * 109.47166 * 149.71460 * 17 16 4 39 39 H 1.08994 * 109.47507 * 29.71166 * 17 16 4 40 40 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3236 1.1335 0.0000 4 6 3.6197 0.7145 0.0063 5 7 4.7484 1.5291 0.0132 6 6 4.6118 2.8699 0.0176 7 8 3.5044 3.3672 0.0160 8 6 5.8225 3.7437 0.0245 9 8 6.9296 3.2464 0.0256 10 7 5.6859 5.0844 0.0294 11 6 6.8739 5.9418 0.0356 12 6 6.4433 7.4099 0.0410 13 6 7.6839 8.3052 0.0481 14 9 5.6817 7.6766 -1.1019 15 9 5.6766 7.6669 1.1826 16 7 3.6089 -0.6440 0.0013 17 6 4.7857 -1.5165 0.0026 18 6 5.1904 -1.8161 -1.4178 19 1 4.6276 -1.3982 -2.2393 20 6 6.2831 -2.6189 -1.6685 21 7 6.9687 -3.1276 -0.6681 22 14 6.7893 -2.9841 -3.4291 23 1 7.1111 -1.7126 -4.1255 24 1 7.9852 -3.8646 -3.4277 25 1 5.6740 -3.6659 -4.1337 26 7 2.2719 -1.0616 0.0005 27 1 -0.3634 0.0003 1.0276 28 1 -0.3634 0.8899 -0.5141 29 1 -0.3634 -0.8901 -0.5136 30 1 1.9870 2.1597 -0.0008 31 1 5.6332 1.1317 0.0148 32 1 4.8010 5.4818 0.0281 33 1 7.4670 5.7342 0.9263 34 1 7.4713 5.7412 -0.8537 35 1 8.2816 8.1051 -0.8412 36 1 7.3772 9.3511 0.0514 37 1 8.2769 8.0973 0.9387 38 1 4.5471 -2.4476 0.5166 39 1 5.6071 -1.0178 0.5169 40 1 7.7371 -3.6927 -0.8445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326311708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:27 Heat of formation + Delta-G solvation = -115.475503 kcal Electronic energy + Delta-G solvation = -27893.582545 eV Core-core repulsion = 23380.233507 eV Total energy + Delta-G solvation = -4513.349038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.07934 -48.07439 -42.66897 -41.56493 -39.81546 -36.97051 -36.14270 -35.62998 -33.87287 -33.07203 -30.91077 -30.16864 -28.55633 -27.83517 -25.80051 -24.69925 -23.00836 -22.46308 -21.47707 -21.05150 -19.58292 -18.90702 -18.76664 -18.44340 -18.01413 -17.61708 -17.36970 -17.10561 -16.65685 -16.38752 -16.17683 -15.84623 -15.43910 -15.26696 -14.98821 -14.64054 -14.45632 -14.42562 -14.09058 -14.04980 -13.79333 -13.60598 -13.45183 -13.33595 -13.14627 -13.12541 -13.02244 -12.87689 -12.70817 -12.30528 -12.14430 -12.10502 -11.75522 -11.43913 -10.95466 -10.77855 -10.64841 -9.70265 -9.20774 -8.38343 -6.56127 -0.13080 0.70169 1.04752 1.36000 1.37503 1.46182 1.71296 1.77810 2.05329 2.25881 2.35092 2.52189 2.92368 3.02194 3.05727 3.34648 3.51664 3.77535 4.11437 4.25772 4.35083 4.47457 4.61286 4.65223 4.67153 4.75684 4.77523 4.81577 4.88618 4.92206 5.06776 5.15664 5.18422 5.48016 5.63676 5.73682 5.90264 5.93425 6.06790 6.37613 6.53765 6.62055 6.93713 7.15704 8.68343 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.011173 B = 0.003232 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.488657 B = 8660.724092 C =10529.524645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.060 3.940 3 C -0.291 4.291 4 C 0.288 3.712 5 N -0.612 5.612 6 C 0.516 3.484 7 O -0.499 6.499 8 C 0.530 3.470 9 O -0.525 6.525 10 N -0.688 5.688 11 C 0.072 3.928 12 C 0.278 3.722 13 C -0.189 4.189 14 F -0.206 7.206 15 F -0.206 7.206 16 N -0.366 5.366 17 C 0.272 3.728 18 C -0.560 4.560 19 H 0.050 0.950 20 C 0.026 3.974 21 N -0.914 5.914 22 Si 0.970 3.030 23 H -0.268 1.268 24 H -0.271 1.271 25 H -0.274 1.274 26 N -0.321 5.321 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.177 0.823 31 H 0.427 0.573 32 H 0.422 0.578 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.031 0.969 39 H 0.044 0.956 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.305 23.446 2.173 23.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.105 4.105 3 C -0.323 4.323 4 C 0.066 3.934 5 N -0.260 5.260 6 C 0.297 3.703 7 O -0.372 6.372 8 C 0.310 3.690 9 O -0.401 6.401 10 N -0.342 5.342 11 C -0.051 4.051 12 C 0.241 3.759 13 C -0.246 4.246 14 F -0.188 7.188 15 F -0.187 7.187 16 N -0.152 5.152 17 C 0.153 3.847 18 C -0.598 4.598 19 H 0.068 0.932 20 C -0.176 4.176 21 N -0.552 5.552 22 Si 0.794 3.206 23 H -0.192 1.192 24 H -0.195 1.195 25 H -0.199 1.199 26 N -0.146 5.146 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.091 0.909 30 H 0.194 0.806 31 H 0.265 0.735 32 H 0.260 0.740 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.128 0.872 36 H 0.112 0.888 37 H 0.129 0.871 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.653 22.049 2.240 22.172 hybrid contribution 0.386 0.101 -0.693 0.799 sum 1.039 22.150 1.547 22.228 Atomic orbital electron populations 1.20257 0.83529 1.04105 1.04057 1.22918 0.98890 0.89808 0.98931 1.21555 0.88434 1.01258 1.21024 1.18346 0.88847 0.82946 1.03255 1.42401 1.08806 1.05382 1.69446 1.20207 0.90348 0.81852 0.77893 1.90693 1.26376 1.73739 1.46373 1.19294 0.87854 0.83623 0.78273 1.90846 1.26354 1.74511 1.48343 1.45437 1.12127 1.04243 1.72403 1.22901 0.88123 0.85983 1.08127 1.21673 0.87271 0.95754 0.71183 1.22794 0.94045 1.00073 1.07718 1.93051 1.78938 1.95202 1.51580 1.93050 1.78676 1.95367 1.51604 1.49366 1.06431 1.02573 1.56800 1.19231 0.78546 0.89016 0.97895 1.21398 1.13818 1.32925 0.91637 0.93213 1.25727 0.95312 0.94316 1.02257 1.69987 1.19371 1.32776 1.33027 0.85424 0.77917 0.78614 0.78669 1.19247 1.19546 1.19906 1.77328 0.86151 1.23688 1.27427 0.89036 0.88473 0.90873 0.80573 0.73504 0.74026 0.86027 0.86239 0.87205 0.88801 0.87089 0.95063 0.93865 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.61 10.44 71.24 0.74 -0.87 16 2 C 0.06 2.32 7.20 43.06 0.31 2.63 16 3 C -0.29 -11.43 9.58 22.15 0.21 -11.21 16 4 C 0.29 12.34 7.68 131.25 1.01 13.34 16 5 N -0.61 -22.90 5.40 -309.57 -1.67 -24.57 16 6 C 0.52 16.47 7.85 87.22 0.68 17.15 16 7 O -0.50 -16.33 13.60 -3.38 -0.05 -16.37 16 8 C 0.53 14.23 7.88 87.22 0.69 14.92 16 9 O -0.52 -16.26 16.47 -3.29 -0.05 -16.31 16 10 N -0.69 -13.61 5.41 -464.57 -2.51 -16.12 16 11 C 0.07 0.95 5.19 86.38 0.45 1.40 16 12 C 0.28 3.26 2.06 30.59 0.06 3.33 16 13 C -0.19 -0.88 9.38 71.98 0.68 -0.21 16 14 F -0.21 -3.34 16.92 44.97 0.76 -2.57 16 15 F -0.21 -3.25 16.92 44.97 0.76 -2.49 16 16 N -0.37 -17.77 3.62 -348.40 -1.26 -19.04 16 17 C 0.27 14.41 6.02 85.64 0.52 14.92 16 18 C -0.56 -31.44 9.39 25.60 0.24 -31.20 16 19 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 20 C 0.03 1.40 5.46 84.66 0.46 1.87 16 21 N -0.91 -51.54 13.29 21.45 0.28 -51.25 16 22 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 26 N -0.32 -15.05 12.56 -47.49 -0.60 -15.65 16 27 H 0.09 2.04 8.14 -2.39 -0.02 2.03 16 28 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.18 6.35 5.83 -2.91 -0.02 6.33 16 31 H 0.43 16.22 7.45 -92.71 -0.69 15.53 16 32 H 0.42 8.02 7.83 -92.71 -0.73 7.29 16 33 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.03 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.04 2.26 7.51 -2.39 -0.02 2.25 16 40 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 Total: -1.00 -70.49 361.21 3.44 -67.04 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: -0.30 Total: 26.04 kcal Atomic # 6 Polarization: 20.01 SS G_CDS: 6.05 Total: 26.06 kcal Atomic # 7 Polarization: -120.87 SS G_CDS: -5.76 Total: -126.63 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.10 Total: -32.69 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 1.52 Total: -5.06 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -70.49 3.44 -67.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326311708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.431 kcal (2) G-P(sol) polarization free energy of solvation -70.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds