Wall clock time and date at job start Tue Mar 31 2020 16:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99528 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00526 * 4 2 1 6 6 H 1.09001 * 109.46555 * 305.00314 * 5 4 2 7 7 C 1.53000 * 109.47280 * 185.00345 * 5 4 2 8 8 N 1.46498 * 109.47042 * 65.00151 * 5 4 2 9 9 C 1.34775 * 120.00097 * 205.00659 * 8 5 4 10 10 O 1.21591 * 119.99888 * 359.97438 * 9 8 5 11 11 C 1.47577 * 120.00333 * 179.97438 * 9 8 5 12 12 C 1.39735 * 120.12803 * 359.97438 * 11 9 8 13 13 C 1.37758 * 119.94166 * 179.97438 * 12 11 9 14 14 C 1.38709 * 120.21353 * 359.97438 * 13 12 11 15 15 F 1.35100 * 119.86918 * 180.02562 * 14 13 12 16 16 C 1.38662 * 120.26871 * 359.97438 * 14 13 12 17 17 F 1.35097 * 119.97434 * 180.02562 * 16 14 13 18 18 C 1.38383 * 120.05070 * 359.79508 * 16 14 13 19 19 F 1.35104 * 120.10621 * 180.25078 * 18 16 14 20 20 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 21 21 C 1.36931 * 119.99788 * 274.99780 * 20 2 1 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 2 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 2 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48498 * 109.47174 * 90.00121 * 25 23 21 27 27 H 1.48501 * 109.47062 * 210.00072 * 25 23 21 28 28 H 1.48504 * 109.46913 * 329.99871 * 25 23 21 29 29 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 31 31 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 32 32 H 1.09003 * 109.47445 * 295.00662 * 4 2 1 33 33 H 1.09002 * 109.47282 * 55.00704 * 4 2 1 34 34 H 1.08991 * 109.47284 * 59.99353 * 7 5 4 35 35 H 1.09002 * 109.46964 * 180.02562 * 7 5 4 36 36 H 1.09005 * 109.46977 * 299.99864 * 7 5 4 37 37 H 0.96996 * 120.00030 * 25.00106 * 8 5 4 38 38 H 1.07997 * 120.03331 * 359.97438 * 12 11 9 39 39 H 1.08001 * 119.89284 * 179.97438 * 13 12 11 40 40 H 0.97000 * 119.99792 * 94.99575 * 20 2 1 41 41 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2676 7 6 4.0646 -1.2253 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3747 -0.9913 0.2736 10 8 5.9878 -0.0838 -0.2544 11 6 5.9675 -1.7172 1.4136 12 6 5.2651 -2.7602 2.0228 13 6 5.8224 -3.4355 3.0863 14 6 7.0797 -3.0839 3.5549 15 9 7.6199 -3.7512 4.5980 16 6 7.7850 -2.0509 2.9563 17 9 9.0093 -1.7138 3.4171 18 6 7.2376 -1.3683 1.8841 19 9 7.9260 -0.3650 1.2968 20 7 2.0183 -0.6906 1.1963 21 6 2.1491 -0.0075 2.3757 22 1 1.8919 1.0404 2.4243 23 6 2.6062 -0.6633 3.5106 24 7 2.9191 -1.9403 3.4515 25 14 2.7773 0.2668 5.1216 26 1 1.5060 0.1751 5.8835 27 1 3.8779 -0.3276 5.9219 28 1 3.0840 1.6923 4.8400 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8898 31 1 -0.3632 0.5139 -0.8901 32 1 1.7516 -1.7716 -1.2055 33 1 1.6055 -0.2618 -2.1369 34 1 3.6265 -0.6890 -3.4656 35 1 5.1510 -1.1488 -2.6695 36 1 3.7723 -2.2744 -2.6698 37 1 3.6646 -2.0586 0.2388 38 1 4.2861 -3.0368 1.6602 39 1 5.2786 -4.2413 3.5568 40 1 2.2489 -1.6318 1.1527 41 1 3.2389 -2.3985 4.2445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135339607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:47 Heat of formation + Delta-G solvation = -130.141038 kcal Electronic energy + Delta-G solvation = -29929.676003 eV Core-core repulsion = 25395.771058 eV Total energy + Delta-G solvation = -4533.904945 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.130 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -49.44257 -48.83772 -48.09948 -39.73813 -37.92320 -36.76146 -34.30563 -32.53476 -31.29692 -30.22816 -29.73078 -28.59827 -26.42389 -24.07518 -23.82879 -22.85658 -21.38611 -20.39234 -19.88165 -18.23206 -17.68290 -17.42721 -17.32670 -16.46384 -16.17411 -15.86197 -15.37261 -15.16943 -14.93007 -14.66279 -14.37924 -14.18191 -14.16665 -13.97676 -13.85327 -13.49149 -13.04761 -12.84444 -12.71833 -12.23514 -12.04597 -11.85633 -11.78472 -11.74170 -11.50025 -11.44937 -11.08845 -10.93764 -10.83498 -10.45663 -10.35490 -10.03159 -9.83120 -9.43879 -9.12401 -8.68009 -8.57500 -8.42810 -7.09641 -6.00850 -3.19954 0.72320 1.12781 3.02057 3.34203 3.41643 3.42753 3.44170 3.74920 3.95853 4.45335 4.46882 4.50498 4.75801 4.92006 4.99623 5.15834 5.31821 5.38838 5.42856 5.59807 5.67136 5.79005 5.87453 5.89977 5.94180 6.04915 6.07622 6.14665 6.27984 6.29560 6.33020 6.38202 6.46388 6.50651 6.75285 6.87889 6.94705 7.03777 7.54964 8.01346 8.21147 8.72982 9.33227 9.84516 10.20644 11.21886 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.010672 B = 0.006021 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.128496 B = 4649.522652 C = 6261.254572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.167 3.833 3 H 0.050 0.950 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.085 0.915 7 C -0.163 4.163 8 N -0.690 5.690 9 C 0.573 3.427 10 O -0.545 6.545 11 C -0.159 4.159 12 C 0.025 3.975 13 C -0.136 4.136 14 C 0.111 3.889 15 F -0.125 7.125 16 C -0.003 4.003 17 F -0.126 7.126 18 C 0.151 3.849 19 F -0.104 7.104 20 N -0.715 5.715 21 C -0.212 4.212 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.929 5.929 25 Si 0.899 3.101 26 H -0.291 1.291 27 H -0.290 1.290 28 H -0.284 1.284 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.036 0.964 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.403 0.597 38 H 0.163 0.837 39 H 0.154 0.846 40 H 0.376 0.624 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.756 -5.097 -7.302 9.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.057 3.943 3 H 0.068 0.932 4 C -0.172 4.172 5 C 0.045 3.955 6 H 0.103 0.897 7 C -0.221 4.221 8 N -0.343 5.343 9 C 0.360 3.640 10 O -0.424 6.424 11 C -0.164 4.164 12 C 0.005 3.995 13 C -0.155 4.155 14 C 0.090 3.910 15 F -0.104 7.104 16 C -0.024 4.024 17 F -0.104 7.104 18 C 0.130 3.870 19 F -0.082 7.082 20 N -0.357 5.357 21 C -0.343 4.343 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.731 3.269 26 H -0.219 1.219 27 H -0.217 1.217 28 H -0.210 1.210 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.242 0.758 38 H 0.180 0.820 39 H 0.171 0.829 40 H 0.211 0.789 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.223 -4.260 -7.522 8.926 hybrid contribution 0.240 0.103 1.703 1.723 sum 2.463 -4.157 -5.819 7.564 Atomic orbital electron populations 1.22399 0.99050 1.00792 1.00053 1.20334 0.91793 0.95880 0.86266 0.93186 1.22218 0.93855 1.01683 0.99463 1.20849 0.92489 0.97412 0.84702 0.89658 1.22210 1.01930 1.00855 0.97135 1.45821 1.17290 1.37546 1.33654 1.17543 0.81658 0.82827 0.81983 1.90777 1.61963 1.30369 1.59297 1.19939 0.93776 1.01339 1.01384 1.21190 0.97293 0.89684 0.91364 1.20987 0.92555 1.03393 0.98549 1.17594 0.93402 0.92466 0.87499 1.91520 1.85817 1.78503 1.54522 1.17259 0.84512 1.01168 0.99507 1.91504 1.39130 1.91808 1.87976 1.17289 0.90483 0.87426 0.91825 1.91598 1.78028 1.56535 1.82022 1.42496 1.77610 1.10094 1.05525 1.19307 1.34097 0.93863 0.87035 0.91281 1.24478 1.02619 0.96084 0.97592 1.69466 1.51145 1.08389 1.28739 0.86283 0.77304 0.79174 0.84178 1.21860 1.21666 1.20961 0.93542 0.92849 0.94467 0.91631 0.90577 0.91995 0.92275 0.92714 0.75835 0.81983 0.82852 0.78878 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.49 37.16 0.35 -2.18 16 2 C 0.17 2.80 2.89 -67.93 -0.20 2.60 16 3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 4 C -0.13 -1.77 4.43 -26.73 -0.12 -1.89 16 5 C 0.15 2.20 2.57 -67.93 -0.17 2.03 16 6 H 0.09 1.45 7.58 -51.93 -0.39 1.06 16 7 C -0.16 -1.99 9.48 37.16 0.35 -1.64 16 8 N -0.69 -11.29 3.75 -54.83 -0.21 -11.50 16 9 C 0.57 11.01 7.73 -12.45 -0.10 10.92 16 10 O -0.54 -12.00 15.00 5.29 0.08 -11.92 16 11 C -0.16 -2.92 5.88 -104.92 -0.62 -3.54 16 12 C 0.03 0.41 7.85 -39.20 -0.31 0.10 16 13 C -0.14 -2.08 10.00 -39.58 -0.40 -2.47 16 14 C 0.11 1.83 7.31 -39.25 -0.29 1.54 16 15 F -0.13 -2.01 17.17 2.25 0.04 -1.97 16 16 C 0.00 -0.05 7.30 -39.37 -0.29 -0.34 16 17 F -0.13 -2.26 17.09 2.25 0.04 -2.22 16 18 C 0.15 2.87 7.29 -38.92 -0.28 2.59 16 19 F -0.10 -2.12 15.46 2.25 0.03 -2.08 16 20 N -0.71 -14.40 3.84 -53.42 -0.21 -14.60 16 21 C -0.21 -5.08 9.93 -15.06 -0.15 -5.23 16 22 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 23 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 24 N -0.93 -21.60 10.74 55.49 0.60 -21.00 16 25 Si 0.90 21.00 29.55 -169.99 -5.02 15.98 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.40 6.31 4.53 -40.82 -0.19 6.12 16 38 H 0.16 2.56 5.84 -52.49 -0.31 2.25 16 39 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 40 H 0.38 7.52 5.70 -40.82 -0.23 7.29 16 41 H 0.26 5.99 8.31 -40.82 -0.34 5.65 16 LS Contribution 352.64 15.07 5.31 5.31 Total: -1.00 -26.60 352.64 -6.53 -33.12 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -4.89 Total: 8.79 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -2.30 Total: 2.08 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.18 Total: -47.10 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.08 Total: -11.92 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 0.11 Total: -6.27 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -26.60 -6.53 -33.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135339607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.017 kcal (2) G-P(sol) polarization free energy of solvation -26.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds