Wall clock time and date at job start Tue Mar 31 2020 15:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47202 * 2 1 4 4 N 1.46497 * 109.47208 * 180.02562 * 3 2 1 5 5 C 1.46496 * 120.00215 * 270.00092 * 4 3 2 6 6 C 1.50705 * 109.47169 * 270.00103 * 5 4 3 7 7 H 1.08007 * 119.99498 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00300 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99627 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00090 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47523 * 59.99443 * 10 8 6 12 12 H 1.48502 * 109.47240 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46926 * 299.99605 * 10 8 6 14 14 C 1.34783 * 119.99786 * 89.99896 * 4 3 2 15 15 O 1.21584 * 119.99398 * 179.97438 * 14 4 3 16 16 N 1.34768 * 120.00166 * 0.27468 * 14 4 3 17 17 C 1.39945 * 120.00072 * 175.17482 * 16 14 4 18 18 C 1.38886 * 120.07028 * 34.69609 * 17 16 14 19 19 C 1.38088 * 119.92962 * 179.79511 * 18 17 16 20 20 C 1.38307 * 120.07435 * 0.48200 * 19 18 17 21 21 C 1.38265 * 120.13371 * 359.75033 * 20 19 18 22 22 C 1.38127 * 120.07106 * 0.02562 * 21 20 19 23 23 C 1.50702 * 120.03478 * 179.97438 * 22 21 20 24 24 F 1.39897 * 109.47257 * 0.02562 * 23 22 21 25 25 F 1.39904 * 109.47329 * 120.02268 * 23 22 21 26 26 F 1.39905 * 109.47154 * 240.02323 * 23 22 21 27 27 H 1.08997 * 109.47146 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47031 * 299.99911 * 1 2 3 29 29 H 1.09001 * 109.47298 * 59.99537 * 1 2 3 30 30 H 1.09003 * 109.47031 * 240.00089 * 2 1 3 31 31 H 1.08997 * 109.47389 * 119.99980 * 2 1 3 32 32 H 1.08995 * 109.47205 * 59.99818 * 3 2 1 33 33 H 1.09005 * 109.46779 * 299.99987 * 3 2 1 34 34 H 1.09001 * 109.47164 * 29.99525 * 5 4 3 35 35 H 1.08992 * 109.47503 * 149.99946 * 5 4 3 36 36 H 0.96992 * 119.99765 * 180.02562 * 9 8 6 37 37 H 0.97003 * 120.00065 * 355.18227 * 16 14 4 38 38 H 1.08000 * 120.03291 * 0.02562 * 18 17 16 39 39 H 1.08001 * 119.96490 * 180.25579 * 19 18 17 40 40 H 1.07995 * 119.93576 * 179.77307 * 20 19 18 41 41 H 1.08000 * 119.96158 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4423 1.2677 6 6 4.4894 2.8631 1.7029 7 1 4.1385 3.6841 1.0951 8 6 5.1672 3.1149 2.8769 9 7 5.5940 2.1151 3.6171 10 14 5.4781 4.8759 3.4166 11 1 4.1804 5.5757 3.5944 12 1 6.2213 4.8758 4.7022 13 1 6.2805 5.5764 2.3817 14 6 4.1784 1.4427 -1.1682 15 8 5.3942 1.4431 -1.1686 16 7 3.5040 1.4484 -2.3350 17 6 4.1999 1.5505 -3.5449 18 6 5.4476 0.9562 -3.6823 19 6 6.1299 1.0552 -4.8788 20 6 5.5765 1.7537 -5.9365 21 6 4.3366 2.3506 -5.8012 22 6 3.6471 2.2513 -4.6085 23 6 2.2961 2.9026 -4.4618 24 9 1.9546 3.5428 -5.6579 25 9 1.3379 1.9274 -4.1649 26 9 2.3414 3.8424 -3.4263 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.6493 0.9284 2.0276 35 1 5.1903 0.9285 1.1370 36 1 6.0706 2.2922 4.4432 37 1 2.5363 1.3819 -2.3363 38 1 5.8822 0.4140 -2.8555 39 1 7.0984 0.5897 -4.9876 40 1 6.1136 1.8328 -6.8700 41 1 3.9069 2.8950 -6.6291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202160621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:05 Heat of formation + Delta-G solvation = -152.362259 kcal Electronic energy + Delta-G solvation = -29513.855102 eV Core-core repulsion = 24978.986572 eV Total energy + Delta-G solvation = -4534.868530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.130 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.23883 -47.78829 -47.64164 -40.52268 -38.74731 -35.90843 -34.66771 -33.13467 -32.07012 -31.91609 -29.78058 -27.43607 -26.03453 -25.58630 -23.60066 -22.47504 -21.86797 -21.51246 -19.52488 -18.78280 -18.53605 -18.39607 -17.54550 -17.03329 -16.46363 -15.50471 -15.24247 -14.95674 -14.73232 -14.58401 -14.53698 -14.32308 -14.20274 -14.09633 -13.91247 -13.82979 -13.78487 -13.51734 -13.06709 -12.86206 -12.71647 -12.31549 -11.97967 -11.81197 -11.69406 -11.44188 -11.28054 -11.15104 -10.91147 -10.60827 -10.52799 -10.30276 -10.14669 -9.66489 -9.44374 -9.16299 -8.44257 -8.24729 -7.71676 -6.05823 -4.10292 0.89810 1.27669 2.60013 2.95700 3.32311 3.36372 3.39535 3.42224 3.68085 3.78956 3.94812 4.24237 4.37845 4.46023 4.77340 4.93000 5.08296 5.16617 5.19772 5.28376 5.33213 5.40337 5.42412 5.57834 5.76757 5.84467 5.95797 6.08396 6.11282 6.14395 6.26591 6.36704 6.44780 6.51119 6.67779 6.94651 7.27039 7.42325 7.55990 7.91239 8.20362 8.43753 8.88834 9.09790 9.54894 11.02127 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.011668 B = 0.004297 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.163676 B = 6515.224663 C = 7223.309456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C 0.108 3.892 4 N -0.601 5.601 5 C 0.261 3.739 6 C -0.528 4.528 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.895 5.895 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.701 3.299 15 O -0.563 6.563 16 N -0.699 5.699 17 C 0.235 3.765 18 C -0.125 4.125 19 C -0.068 4.068 20 C -0.150 4.150 21 C -0.056 4.056 22 C -0.229 4.229 23 C 0.510 3.490 24 F -0.178 7.178 25 F -0.182 7.182 26 F -0.171 7.171 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.036 0.964 35 H 0.046 0.954 36 H 0.264 0.736 37 H 0.404 0.596 38 H 0.156 0.844 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.841 -3.509 -17.958 19.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.184 4.184 3 C -0.016 4.016 4 N -0.335 5.335 5 C 0.142 3.858 6 C -0.567 4.567 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.403 3.597 15 O -0.439 6.439 16 N -0.349 5.349 17 C 0.137 3.863 18 C -0.145 4.145 19 C -0.087 4.087 20 C -0.169 4.169 21 C -0.075 4.075 22 C -0.233 4.233 23 C 0.456 3.544 24 F -0.159 7.159 25 F -0.164 7.164 26 F -0.152 7.152 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.242 0.758 38 H 0.173 0.827 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.916 -3.522 -17.569 19.207 hybrid contribution -0.636 1.178 0.433 1.407 sum -7.552 -2.344 -17.136 18.872 Atomic orbital electron populations 1.21705 0.95389 1.01629 1.01924 1.22024 0.95840 0.97773 1.02759 1.21520 0.81279 0.96040 1.02769 1.47628 1.05490 1.74230 1.06123 1.19271 0.92254 0.97569 0.76696 1.21411 1.36653 0.92308 1.06318 0.92498 1.24902 0.95281 0.97414 0.96316 1.69916 1.38344 1.30757 1.14360 0.86563 0.78392 0.84701 0.77801 1.20247 1.21155 1.20195 1.15872 0.85504 0.78413 0.79918 1.90886 1.11121 1.56579 1.85346 1.43256 1.10491 1.77292 1.03874 1.17228 0.92976 0.92369 0.83759 1.21505 0.93979 1.00257 0.98808 1.21316 0.99278 0.96022 0.92053 1.21045 0.95615 1.00501 0.99748 1.20730 0.94437 0.97219 0.95121 1.19742 0.96458 1.08397 0.98743 1.18267 0.85606 0.76700 0.73849 1.93142 1.93376 1.82782 1.46611 1.93171 1.67153 1.62924 1.93120 1.93274 1.96669 1.66291 1.58964 0.92692 0.92306 0.92867 0.92440 0.90873 0.89168 0.92527 0.94606 0.93621 0.92643 0.75775 0.82674 0.84929 0.85120 0.84558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.16 0.37 -1.24 16 2 C -0.15 -1.97 6.26 -26.73 -0.17 -2.14 16 3 C 0.11 1.77 5.14 -4.04 -0.02 1.75 16 4 N -0.60 -12.65 2.46 -180.81 -0.44 -13.09 16 5 C 0.26 6.68 5.16 -5.19 -0.03 6.66 16 6 C -0.53 -14.88 9.39 -34.44 -0.32 -15.21 16 7 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 10 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.70 14.78 8.12 -86.92 -0.71 14.08 16 15 O -0.56 -13.82 13.33 5.29 0.07 -13.75 16 16 N -0.70 -11.81 4.55 -14.22 -0.06 -11.88 16 17 C 0.24 3.69 6.21 -83.69 -0.52 3.17 16 18 C -0.13 -1.89 8.70 -39.40 -0.34 -2.24 16 19 C -0.07 -0.79 10.04 -39.61 -0.40 -1.19 16 20 C -0.15 -1.52 10.04 -39.55 -0.40 -1.92 16 21 C -0.06 -0.63 9.43 -39.61 -0.37 -1.00 16 22 C -0.23 -3.10 5.38 -104.43 -0.56 -3.66 16 23 C 0.51 6.75 2.88 36.01 0.10 6.86 16 24 F -0.18 -2.14 15.97 2.25 0.04 -2.10 16 25 F -0.18 -2.29 15.85 2.25 0.04 -2.25 16 26 F -0.17 -2.61 16.89 2.25 0.04 -2.57 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.09 1.52 8.07 -51.93 -0.42 1.10 16 33 H 0.06 0.83 6.43 -51.93 -0.33 0.50 16 34 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 35 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.40 6.02 4.81 -40.82 -0.20 5.82 16 38 H 0.16 2.66 6.20 -52.49 -0.33 2.33 16 39 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.14 1.20 7.16 -52.49 -0.38 0.82 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -31.75 356.42 -7.66 -39.41 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -4.96 Total: 3.85 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -3.46 Total: 5.62 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.23 Total: -50.50 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.07 Total: -13.75 kcal Atomic # 9 Polarization: -7.03 SS G_CDS: 0.11 Total: -6.92 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.75 -7.66 -39.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202160621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.952 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds