Wall clock time and date at job start Tue Mar 31 2020 16:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.46906 * 2 1 4 4 C 1.46899 * 111.00065 * 288.16765 * 3 2 1 5 5 C 1.50701 * 109.47072 * 160.36170 * 4 3 2 6 6 H 1.07998 * 120.00136 * 4.64271 * 5 4 3 7 7 C 1.37879 * 119.99808 * 184.64897 * 5 4 3 8 8 N 1.31517 * 120.00228 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99672 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47309 * 59.99786 * 9 7 5 11 11 H 1.48502 * 109.46722 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46944 * 299.99534 * 9 7 5 13 13 C 1.46901 * 110.99451 * 164.21384 * 3 2 1 14 14 C 1.50696 * 109.47523 * 293.95264 * 13 3 2 15 15 C 1.38787 * 120.31732 * 90.00278 * 14 13 3 16 16 C 1.38387 * 118.51484 * 179.75547 * 15 14 13 17 17 C 1.39347 * 119.07057 * 0.24461 * 16 15 14 18 18 C 1.48333 * 119.73414 * 180.02562 * 17 16 15 19 19 C 1.39371 * 120.10424 * 359.72944 * 18 17 16 20 20 C 1.37986 * 119.88425 * 179.72100 * 19 18 17 21 21 C 1.38449 * 120.10993 * 0.54882 * 20 19 18 22 22 Cl 1.73597 * 119.89162 * 179.74386 * 21 20 19 23 23 C 1.38455 * 120.22193 * 359.72753 * 21 20 19 24 24 C 1.37981 * 120.10926 * 359.97438 * 23 21 20 25 25 N 1.32665 * 120.53958 * 0.02562 * 17 16 15 26 26 C 1.31768 * 121.61014 * 359.97438 * 25 17 16 27 27 H 1.08998 * 109.47376 * 299.61756 * 1 2 3 28 28 H 1.09003 * 109.47094 * 59.62235 * 1 2 3 29 29 H 1.09000 * 109.47251 * 179.61676 * 1 2 3 30 30 H 1.09001 * 109.46785 * 239.99888 * 2 1 3 31 31 H 1.09003 * 109.47017 * 120.00162 * 2 1 3 32 32 H 1.09005 * 109.46894 * 280.35480 * 4 3 2 33 33 H 1.08995 * 109.47178 * 40.35837 * 4 3 2 34 34 H 0.96997 * 119.99952 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.46655 * 173.95484 * 13 3 2 36 36 H 1.08998 * 109.47137 * 53.95709 * 13 3 2 37 37 H 1.08006 * 120.74267 * 0.02562 * 15 14 13 38 38 H 1.08000 * 120.46896 * 180.27248 * 16 15 14 39 39 H 1.07996 * 120.05899 * 359.97438 * 19 18 17 40 40 H 1.08000 * 119.94200 * 180.27606 * 20 19 18 41 41 H 1.07992 * 119.94647 * 179.97438 * 23 21 20 42 42 H 1.08003 * 120.05624 * 180.02562 * 24 23 21 43 43 H 1.08006 * 119.54970 * 179.97438 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7919 2.0239 -1.3030 5 6 1.8436 3.5216 -1.1441 6 1 2.1012 3.9546 -0.1888 7 6 1.5620 4.3389 -2.2181 8 7 1.2487 3.8116 -3.3815 9 14 1.6255 6.1954 -2.0209 10 1 2.9925 6.6030 -1.6086 11 1 1.2852 6.8424 -3.3135 12 1 0.6495 6.6166 -0.9839 13 6 3.4393 1.4413 0.3731 14 6 3.5998 1.0043 1.8064 15 6 3.8145 -0.3325 2.1113 16 6 3.9619 -0.6916 3.4396 17 6 3.8850 0.2952 4.4204 18 6 4.0414 -0.0732 5.8487 19 6 4.2588 -1.4022 6.2080 20 6 4.4094 -1.7390 7.5376 21 6 4.3336 -0.7612 8.5148 22 17 4.5174 -1.1923 10.1863 23 6 4.1121 0.5596 8.1633 24 6 3.9663 0.9075 6.8361 25 7 3.6730 1.5617 4.0872 26 6 3.5292 1.9304 2.8303 27 1 -0.3634 0.5079 0.8934 28 1 -0.3633 0.5197 -0.8866 29 1 -0.3634 -1.0276 -0.0069 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.5643 1.7060 -2.0034 33 1 0.8133 1.7325 -1.6845 34 1 1.0509 4.3866 -4.1372 35 1 3.8040 2.4625 0.2616 36 1 4.0120 0.7782 -0.2753 37 1 3.8697 -1.0752 1.3292 38 1 4.1346 -1.7223 3.7123 39 1 4.3133 -2.1664 5.4469 40 1 4.5824 -2.7679 7.8168 41 1 4.0534 1.3187 8.9292 42 1 3.7939 1.9381 6.5628 43 1 3.3575 2.9708 2.5968 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237009577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:04 Heat of formation + Delta-G solvation = 52.137917 kcal Electronic energy + Delta-G solvation = -24328.945767 eV Core-core repulsion = 20785.510936 eV Total energy + Delta-G solvation = -3543.434832 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.51674 -39.14486 -37.10905 -36.67234 -33.26436 -32.60394 -32.41631 -31.28026 -30.63391 -29.31818 -26.98812 -25.12362 -24.15964 -22.96666 -22.67619 -22.17197 -21.13180 -19.80384 -17.90679 -16.65577 -16.55091 -16.40426 -15.67490 -15.11201 -14.96701 -14.71902 -14.47115 -14.19961 -14.00203 -13.76578 -13.58727 -13.39399 -13.35843 -13.01709 -12.61342 -12.09045 -11.93374 -11.85158 -11.77428 -11.59249 -11.34253 -11.17856 -11.05427 -10.92973 -10.82472 -10.62706 -10.32292 -9.81315 -9.74732 -9.53714 -9.36516 -9.35647 -9.26043 -8.45081 -8.19917 -7.34799 -6.05506 -4.07040 0.33162 1.01574 1.33849 1.58859 1.81145 3.30398 3.31880 3.36332 3.39161 3.99822 4.04280 4.40227 4.40785 4.57383 4.73112 4.85471 4.92984 5.00990 5.07353 5.15530 5.24961 5.30633 5.31619 5.40897 5.62447 5.64569 5.66285 5.81606 5.89089 5.95694 6.00518 6.04778 6.11101 6.24918 6.26552 6.35603 6.45653 6.48326 6.54233 6.76661 6.80947 7.15995 7.26731 7.76851 8.02077 8.05498 8.12361 8.47620 8.99670 9.57224 11.04922 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.021159 B = 0.002195 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.007021 B =12751.062441 C =13568.984663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.045 3.955 3 N -0.529 5.529 4 C 0.191 3.809 5 C -0.506 4.506 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.099 3.901 14 C -0.103 4.103 15 C -0.074 4.074 16 C -0.160 4.160 17 C 0.143 3.857 18 C -0.030 4.030 19 C -0.094 4.094 20 C -0.113 4.113 21 C -0.032 4.032 22 Cl -0.075 7.075 23 C -0.114 4.114 24 C -0.071 4.071 25 N -0.476 5.476 26 C 0.126 3.874 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.022 0.978 31 H 0.059 0.941 32 H -0.011 1.011 33 H 0.039 0.961 34 H 0.262 0.738 35 H 0.096 0.904 36 H 0.033 0.967 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.146 0.854 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.974 -12.395 19.843 24.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 N -0.254 5.254 4 C 0.067 3.933 5 C -0.545 4.545 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.030 4.030 14 C -0.105 4.105 15 C -0.100 4.100 16 C -0.180 4.180 17 C 0.007 3.993 18 C -0.031 4.031 19 C -0.113 4.113 20 C -0.132 4.132 21 C -0.059 4.059 22 Cl -0.046 7.046 23 C -0.133 4.133 24 C -0.090 4.090 25 N -0.184 5.184 26 C -0.033 4.033 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.007 0.993 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.051 0.949 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.164 0.836 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.612 -11.475 20.777 24.638 hybrid contribution 0.441 -0.168 -1.240 1.326 sum 7.053 -11.643 19.537 23.811 Atomic orbital electron populations 1.21729 0.95420 0.99938 1.02940 1.22101 0.96194 0.90995 0.99006 1.62215 1.14020 1.14363 1.34775 1.19813 0.96630 0.94268 0.82615 1.21107 1.46424 0.90544 0.96390 0.91928 1.24985 0.95416 0.98970 0.95217 1.69940 1.47418 1.35392 1.01115 0.86577 0.78562 0.85166 0.77210 1.20254 1.21422 1.20140 1.20952 0.91100 1.02202 0.88722 1.21187 0.97322 0.93707 0.98332 1.21478 0.96350 0.96049 0.96141 1.21949 1.02642 1.00202 0.93227 1.19555 0.98169 0.89455 0.92103 1.18652 1.00030 0.93262 0.91165 1.21186 0.98888 0.95551 0.95690 1.20926 1.01342 0.99193 0.91711 1.21056 1.04787 0.94882 0.85200 1.98371 1.95966 1.93455 1.16806 1.21067 1.00756 0.94455 0.97002 1.21342 0.96196 1.00660 0.90802 1.67604 1.11841 1.17703 1.21266 1.22694 0.93655 1.00605 0.86330 0.92488 0.91928 0.93684 0.96000 0.92243 0.99273 0.94300 0.92862 0.88612 0.94908 0.84948 0.85009 0.84625 0.84701 0.84681 0.83634 0.81968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.98 37.16 0.37 -2.02 16 2 C 0.05 0.79 5.52 -3.83 -0.02 0.76 16 3 N -0.53 -10.66 4.37 -237.52 -1.04 -11.70 16 4 C 0.19 4.73 4.59 -4.98 -0.02 4.70 16 5 C -0.51 -13.60 8.61 -34.44 -0.30 -13.90 16 6 H 0.06 1.65 7.66 -52.49 -0.40 1.25 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.04 13.29 55.43 0.74 -25.30 16 9 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.10 1.73 4.96 -4.98 -0.02 1.70 16 14 C -0.10 -1.55 4.95 -104.42 -0.52 -2.06 16 15 C -0.07 -0.94 8.00 -39.32 -0.31 -1.26 16 16 C -0.16 -1.86 9.46 -39.11 -0.37 -2.23 16 17 C 0.14 1.87 6.73 -82.94 -0.56 1.31 16 18 C -0.03 -0.34 5.88 -104.90 -0.62 -0.96 16 19 C -0.09 -0.85 9.42 -39.25 -0.37 -1.22 16 20 C -0.11 -0.95 9.81 -39.60 -0.39 -1.34 16 21 C -0.03 -0.30 6.32 -39.42 -0.25 -0.55 16 22 Cl -0.07 -0.64 28.95 -51.86 -1.50 -2.14 16 23 C -0.11 -1.07 9.81 -39.60 -0.39 -1.46 16 24 C -0.07 -0.76 9.57 -39.25 -0.38 -1.14 16 25 N -0.48 -7.03 9.43 -9.78 -0.09 -7.12 16 26 C 0.13 1.91 10.85 -17.58 -0.19 1.72 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 1.18 6.52 -51.93 -0.34 0.84 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 31 H 0.06 0.91 5.16 -51.93 -0.27 0.64 16 32 H -0.01 -0.28 8.00 -51.93 -0.42 -0.69 16 33 H 0.04 1.04 6.23 -51.93 -0.32 0.71 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.10 1.80 7.27 -51.93 -0.38 1.42 16 36 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 37 H 0.13 1.46 7.76 -52.48 -0.41 1.05 16 38 H 0.13 1.11 6.19 -52.49 -0.32 0.79 16 39 H 0.14 0.93 6.18 -52.49 -0.32 0.60 16 40 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.15 1.59 7.54 -52.48 -0.40 1.19 16 43 H 0.16 2.42 8.06 -52.48 -0.42 1.99 16 LS Contribution 370.22 15.07 5.58 5.58 Total: -1.00 -29.46 370.22 -11.43 -40.90 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -5.66 Total: 0.14 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -4.43 Total: -16.49 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: -0.39 Total: -44.12 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.14 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.46 -11.43 -40.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237009577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.033 kcal (2) G-P(sol) polarization free energy of solvation -29.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds