Wall clock time and date at job start Tue Mar 31 2020 16:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47434 * 2 1 4 4 C 1.52996 * 109.47208 * 120.00552 * 2 1 3 5 5 N 1.46498 * 109.47098 * 175.00091 * 4 2 1 6 6 C 1.36946 * 119.99918 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99847 * 359.97438 * 6 5 4 8 8 C 1.38807 * 120.00127 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99916 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00065 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47015 * 90.00255 * 10 8 6 12 12 H 1.48498 * 109.47064 * 209.99904 * 10 8 6 13 13 H 1.48498 * 109.47302 * 330.00481 * 10 8 6 14 14 N 1.46506 * 109.47154 * 240.00417 * 2 1 3 15 15 C 1.46492 * 119.99800 * 300.00110 * 14 2 1 16 16 C 1.34783 * 119.99830 * 120.00018 * 14 2 1 17 17 O 1.21561 * 119.99762 * 356.47302 * 16 14 2 18 18 C 1.47691 * 119.99499 * 176.75206 * 16 14 2 19 19 C 1.39659 * 120.16799 * 332.80405 * 18 16 14 20 20 C 1.37860 * 119.87789 * 180.02562 * 19 18 16 21 21 C 1.38450 * 120.22004 * 0.02605 * 20 19 18 22 22 C 1.38207 * 120.33940 * 359.95442 * 21 20 19 23 23 C 1.50706 * 119.94285 * 180.02562 * 22 21 20 24 24 F 1.39899 * 109.47255 * 119.99801 * 23 22 21 25 25 F 1.39896 * 109.46835 * 240.00193 * 23 22 21 26 26 C 1.38321 * 120.11598 * 359.76536 * 22 21 20 27 27 F 1.35099 * 120.11364 * 180.27724 * 26 22 21 28 28 H 1.09000 * 109.46731 * 299.99682 * 1 2 3 29 29 H 1.09000 * 109.46830 * 59.99482 * 1 2 3 30 30 H 1.08999 * 109.46818 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46899 * 294.99590 * 4 2 1 32 32 H 1.08997 * 109.47281 * 54.99838 * 4 2 1 33 33 H 0.96995 * 120.00093 * 359.97438 * 5 4 2 34 34 H 0.96998 * 120.00313 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.47593 * 276.03391 * 15 14 2 36 36 H 1.09001 * 109.47753 * 36.03597 * 15 14 2 37 37 H 1.09007 * 109.47179 * 156.03280 * 15 14 2 38 38 H 1.08002 * 120.05960 * 0.02952 * 19 18 16 39 39 H 1.08000 * 119.88829 * 180.02562 * 20 19 18 40 40 H 1.08002 * 119.83365 * 179.97438 * 21 20 19 41 41 H 1.08998 * 109.46559 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1904 6 6 4.1839 -1.4381 2.2071 7 1 3.6469 -1.8426 3.0523 8 6 5.5673 -1.5382 2.1513 9 7 6.2217 -1.0456 1.1209 10 14 6.5001 -2.3719 3.5383 11 1 6.6318 -3.8217 3.2450 12 1 7.8508 -1.7669 3.6602 13 1 5.7594 -2.1900 4.8125 14 7 2.0184 -0.6905 -1.1963 15 6 1.6644 -2.0930 -1.4282 16 6 2.7933 -0.0354 -2.0834 17 8 3.0341 1.1454 -1.9244 18 6 3.3446 -0.7509 -3.2519 19 6 3.5733 -2.1271 -3.1885 20 6 4.0886 -2.7888 -4.2826 21 6 4.3806 -2.0935 -5.4436 22 6 4.1574 -0.7315 -5.5165 23 6 4.4780 0.0165 -6.7850 24 9 3.3145 0.6154 -7.2798 25 9 5.4324 1.0032 -6.5160 26 6 3.6354 -0.0546 -4.4291 27 9 3.4121 1.2758 -4.5023 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -0.1584 2.1369 32 1 1.6054 -1.7199 1.2950 33 1 3.9824 -0.4628 0.4315 34 1 7.1884 -1.1152 1.0821 35 1 2.3544 -2.7369 -0.8827 36 1 0.6473 -2.2734 -1.0804 37 1 1.7282 -2.3124 -2.4940 38 1 3.3468 -2.6720 -2.2839 39 1 4.2651 -3.8532 -4.2338 40 1 4.7845 -2.6181 -6.2969 41 1 4.8730 -0.6782 -7.5263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753693100.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:33 Heat of formation + Delta-G solvation = -117.590694 kcal Electronic energy + Delta-G solvation = -29216.816627 eV Core-core repulsion = 24683.455905 eV Total energy + Delta-G solvation = -4533.360722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.36020 -48.66586 -47.11349 -40.35256 -38.58475 -36.39230 -34.22829 -32.99720 -31.48295 -30.79020 -29.98026 -27.19679 -26.14833 -25.67893 -24.36076 -22.59754 -22.10688 -21.13390 -19.26252 -17.89374 -17.73997 -17.43382 -17.38940 -17.08052 -16.36691 -16.11555 -15.73571 -15.56304 -15.11396 -14.89695 -14.65742 -13.98941 -13.83685 -13.69674 -13.64731 -13.47297 -13.29060 -13.05208 -12.86572 -12.57414 -12.38539 -12.29803 -12.27022 -12.18705 -11.94802 -11.59735 -11.45534 -11.04096 -10.85267 -10.80220 -10.46127 -10.06709 -9.71662 -9.64589 -9.29334 -8.95874 -8.89119 -8.32476 -6.92459 -5.74691 -3.04942 0.56319 0.80506 2.79945 3.10379 3.41636 3.44415 3.47523 3.49795 3.50913 3.81431 3.99532 4.25778 4.49413 4.58291 4.70231 4.79386 4.81350 4.97611 5.12931 5.23993 5.34261 5.36077 5.53374 5.58851 5.61319 5.65716 5.74883 5.82648 5.90631 6.00210 6.03462 6.08182 6.16408 6.34618 6.43029 6.49151 6.69842 6.92752 7.60060 7.68789 8.41574 8.42533 9.53820 10.11904 10.47152 11.47167 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.013143 B = 0.003919 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.928546 B = 7142.233017 C = 8131.710213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 H 0.102 0.898 4 C 0.144 3.856 5 N -0.729 5.729 6 C -0.242 4.242 7 H 0.070 0.930 8 C -0.011 4.011 9 N -0.928 5.928 10 Si 0.906 3.094 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 N -0.589 5.589 15 C 0.064 3.936 16 C 0.562 3.438 17 O -0.521 6.521 18 C -0.162 4.162 19 C -0.042 4.042 20 C -0.143 4.143 21 C -0.038 4.038 22 C -0.227 4.227 23 C 0.320 3.680 24 F -0.198 7.198 25 F -0.194 7.194 26 C 0.193 3.807 27 F -0.108 7.108 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.029 0.971 32 H 0.021 0.979 33 H 0.386 0.614 34 H 0.255 0.745 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.163 0.837 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.294 -5.852 -16.469 19.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.023 3.977 3 H 0.120 0.880 4 C 0.016 3.984 5 N -0.374 5.374 6 C -0.374 4.374 7 H 0.087 0.913 8 C -0.208 4.208 9 N -0.576 5.576 10 Si 0.737 3.263 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.208 1.208 14 N -0.321 5.321 15 C -0.079 4.079 16 C 0.349 3.651 17 O -0.397 6.397 18 C -0.166 4.166 19 C -0.060 4.060 20 C -0.161 4.161 21 C -0.056 4.056 22 C -0.229 4.229 23 C 0.266 3.734 24 F -0.179 7.179 25 F -0.175 7.175 26 C 0.172 3.828 27 F -0.085 7.085 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.039 0.961 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.180 0.820 39 H 0.161 0.839 40 H 0.160 0.840 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.153 -5.180 -16.215 19.327 hybrid contribution 0.817 -0.112 0.622 1.033 sum -8.336 -5.292 -15.593 18.456 Atomic orbital electron populations 1.22059 0.94995 1.02080 1.02261 1.21453 0.93426 0.98607 0.84190 0.88001 1.21006 0.87120 0.96785 0.93520 1.42320 0.99684 1.70201 1.25165 1.19202 0.89433 1.29531 0.99194 0.91252 1.24748 0.96432 1.01598 0.98002 1.69689 1.07208 1.50589 1.30160 0.86219 0.79520 0.78900 0.81698 1.21797 1.21791 1.20792 1.47478 1.50083 1.12198 1.22339 1.22339 1.01548 0.82533 1.01485 1.17839 0.78691 0.86433 0.82105 1.90829 1.58616 1.15052 1.75246 1.20086 1.07261 0.95012 0.94271 1.22202 0.91603 0.92262 0.99925 1.21171 1.01050 1.01190 0.92735 1.20971 0.94721 0.91199 0.98728 1.20394 1.10399 0.96272 0.95858 1.20252 0.75584 0.84623 0.92938 1.93031 1.50486 1.85798 1.88570 1.93058 1.64099 1.65261 1.95104 1.17390 0.94606 0.78005 0.92753 1.91620 1.91076 1.29474 1.96376 0.91209 0.92540 0.92289 0.95286 0.96081 0.78020 0.93509 0.90908 0.91143 0.90501 0.81958 0.83878 0.84004 0.85815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.16 37.16 0.34 -1.64 16 2 C 0.13 2.17 2.80 -67.93 -0.19 1.98 16 3 H 0.10 2.03 6.90 -51.93 -0.36 1.67 16 4 C 0.14 2.86 5.56 -4.04 -0.02 2.83 16 5 N -0.73 -18.60 5.43 -59.91 -0.33 -18.92 16 6 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 7 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 8 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 9 N -0.93 -28.49 13.06 55.49 0.72 -27.77 16 10 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 N -0.59 -9.82 2.24 -175.10 -0.39 -10.22 16 15 C 0.06 0.79 7.91 59.84 0.47 1.27 16 16 C 0.56 10.85 7.12 -12.40 -0.09 10.77 16 17 O -0.52 -12.15 15.13 5.31 0.08 -12.07 16 18 C -0.16 -2.65 5.46 -104.91 -0.57 -3.22 16 19 C -0.04 -0.54 7.49 -39.19 -0.29 -0.83 16 20 C -0.14 -1.38 10.03 -39.64 -0.40 -1.78 16 21 C -0.04 -0.34 9.66 -39.51 -0.38 -0.72 16 22 C -0.23 -2.78 5.37 -104.60 -0.56 -3.34 16 23 C 0.32 3.45 5.16 36.01 0.19 3.63 16 24 F -0.20 -2.49 17.06 2.25 0.04 -2.45 16 25 F -0.19 -2.68 17.08 2.25 0.04 -2.64 16 26 C 0.19 3.12 7.07 -38.96 -0.28 2.85 16 27 F -0.11 -2.03 15.10 2.25 0.03 -1.99 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.65 6.70 -51.93 -0.35 0.31 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.02 0.40 7.84 -51.93 -0.41 -0.01 16 33 H 0.39 10.77 7.06 -40.82 -0.29 10.48 16 34 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.07 0.99 7.21 -51.93 -0.37 0.62 16 36 H 0.07 0.73 6.46 -51.93 -0.34 0.39 16 37 H 0.08 0.79 5.05 -51.92 -0.26 0.53 16 38 H 0.16 2.00 4.63 -52.49 -0.24 1.76 16 39 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.14 0.67 7.94 -52.49 -0.42 0.26 16 41 H 0.12 0.71 7.87 -51.93 -0.41 0.30 16 LS Contribution 350.55 15.07 5.28 5.28 Total: -1.00 -36.34 350.55 -6.25 -42.60 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -4.68 Total: 6.39 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -2.03 Total: 4.46 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.01 Total: -56.90 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.08 Total: -12.07 kcal Atomic # 9 Polarization: -7.20 SS G_CDS: 0.11 Total: -7.09 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.34 -6.25 -42.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753693100.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.994 kcal (2) G-P(sol) polarization free energy of solvation -36.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds