Wall clock time and date at job start Tue Mar 31 2020 16:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47434 * 2 1 4 4 C 1.52996 * 109.47208 * 120.00552 * 2 1 3 5 5 N 1.46498 * 109.47098 * 175.00091 * 4 2 1 6 6 C 1.36946 * 119.99918 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99847 * 359.97438 * 6 5 4 8 8 C 1.38807 * 120.00127 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99916 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00065 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47015 * 90.00255 * 10 8 6 12 12 H 1.48498 * 109.47064 * 209.99904 * 10 8 6 13 13 H 1.48498 * 109.47302 * 330.00481 * 10 8 6 14 14 N 1.46506 * 109.47154 * 240.00417 * 2 1 3 15 15 C 1.46492 * 119.99800 * 300.00110 * 14 2 1 16 16 C 1.34783 * 119.99830 * 120.00018 * 14 2 1 17 17 O 1.21561 * 119.99762 * 356.47302 * 16 14 2 18 18 C 1.47691 * 119.99499 * 176.75206 * 16 14 2 19 19 C 1.39659 * 120.16799 * 332.80405 * 18 16 14 20 20 C 1.37860 * 119.87789 * 180.02562 * 19 18 16 21 21 C 1.38450 * 120.22004 * 0.02605 * 20 19 18 22 22 C 1.38207 * 120.33940 * 359.95442 * 21 20 19 23 23 C 1.50706 * 119.94285 * 180.02562 * 22 21 20 24 24 F 1.39899 * 109.47255 * 119.99801 * 23 22 21 25 25 F 1.39896 * 109.46835 * 240.00193 * 23 22 21 26 26 C 1.38321 * 120.11598 * 359.76536 * 22 21 20 27 27 F 1.35099 * 120.11364 * 180.27724 * 26 22 21 28 28 H 1.09000 * 109.46731 * 299.99682 * 1 2 3 29 29 H 1.09000 * 109.46830 * 59.99482 * 1 2 3 30 30 H 1.08999 * 109.46818 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46899 * 294.99590 * 4 2 1 32 32 H 1.08997 * 109.47281 * 54.99838 * 4 2 1 33 33 H 0.96995 * 120.00093 * 359.97438 * 5 4 2 34 34 H 0.96998 * 120.00313 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.47593 * 276.03391 * 15 14 2 36 36 H 1.09001 * 109.47753 * 36.03597 * 15 14 2 37 37 H 1.09007 * 109.47179 * 156.03280 * 15 14 2 38 38 H 1.08002 * 120.05960 * 0.02952 * 19 18 16 39 39 H 1.08000 * 119.88829 * 180.02562 * 20 19 18 40 40 H 1.08002 * 119.83365 * 179.97438 * 21 20 19 41 41 H 1.08998 * 109.46559 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1904 6 6 4.1839 -1.4381 2.2071 7 1 3.6469 -1.8426 3.0523 8 6 5.5673 -1.5382 2.1513 9 7 6.2217 -1.0456 1.1209 10 14 6.5001 -2.3719 3.5383 11 1 6.6318 -3.8217 3.2450 12 1 7.8508 -1.7669 3.6602 13 1 5.7594 -2.1900 4.8125 14 7 2.0184 -0.6905 -1.1963 15 6 1.6644 -2.0930 -1.4282 16 6 2.7933 -0.0354 -2.0834 17 8 3.0341 1.1454 -1.9244 18 6 3.3446 -0.7509 -3.2519 19 6 3.5733 -2.1271 -3.1885 20 6 4.0886 -2.7888 -4.2826 21 6 4.3806 -2.0935 -5.4436 22 6 4.1574 -0.7315 -5.5165 23 6 4.4780 0.0165 -6.7850 24 9 3.3145 0.6154 -7.2798 25 9 5.4324 1.0032 -6.5160 26 6 3.6354 -0.0546 -4.4291 27 9 3.4121 1.2758 -4.5023 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -0.1584 2.1369 32 1 1.6054 -1.7199 1.2950 33 1 3.9824 -0.4628 0.4315 34 1 7.1884 -1.1152 1.0821 35 1 2.3544 -2.7369 -0.8827 36 1 0.6473 -2.2734 -1.0804 37 1 1.7282 -2.3124 -2.4940 38 1 3.3468 -2.6720 -2.2839 39 1 4.2651 -3.8532 -4.2338 40 1 4.7845 -2.6181 -6.2969 41 1 4.8730 -0.6782 -7.5263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753693100.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:32 Heat of formation + Delta-G solvation = -142.227315 kcal Electronic energy + Delta-G solvation = -29217.884951 eV Core-core repulsion = 24683.455905 eV Total energy + Delta-G solvation = -4534.429046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.42121 -49.74835 -48.04285 -41.59773 -39.66326 -37.92081 -35.97264 -34.34986 -32.88517 -31.99692 -31.43156 -28.29960 -27.41969 -27.08358 -25.50928 -24.42493 -23.03809 -22.43523 -20.60884 -19.14132 -18.91022 -18.79180 -18.45813 -18.30769 -17.58798 -17.27729 -16.93430 -16.78990 -16.59646 -16.31770 -15.92251 -15.38687 -15.20348 -15.08076 -14.94044 -14.66955 -14.42023 -14.26634 -13.97394 -13.88454 -13.76647 -13.63040 -13.29749 -13.17738 -13.09204 -13.02524 -12.77897 -12.56821 -12.43158 -12.14985 -12.02178 -11.80129 -11.72961 -11.06801 -10.92094 -10.29946 -9.98294 -9.64604 -9.01959 -7.93617 -5.24798 -0.40901 -0.18041 1.45751 1.48653 1.56998 1.62711 1.87172 2.40137 2.55185 2.62203 2.94198 3.15759 3.23931 3.39308 3.60589 3.74238 3.89437 3.96372 3.98039 4.04540 4.14069 4.23946 4.27662 4.41206 4.46847 4.61283 4.73448 4.75865 4.78275 4.83677 4.87542 4.93484 5.03422 5.10877 5.16703 5.27018 5.47248 5.55565 5.63476 6.24595 6.28667 7.03250 7.31583 8.06591 8.30550 9.29343 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.013143 B = 0.003919 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.928546 B = 7142.233017 C = 8131.710213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.127 3.873 3 H 0.062 0.938 4 C 0.144 3.856 5 N -0.744 5.744 6 C -0.244 4.244 7 H 0.081 0.919 8 C -0.075 4.075 9 N -0.971 5.971 10 Si 0.976 3.024 11 H -0.280 1.280 12 H -0.302 1.302 13 H -0.270 1.270 14 N -0.586 5.586 15 C 0.059 3.941 16 C 0.546 3.454 17 O -0.584 6.584 18 C -0.193 4.193 19 C -0.051 4.051 20 C -0.127 4.127 21 C -0.013 4.013 22 C -0.230 4.230 23 C 0.310 3.690 24 F -0.213 7.213 25 F -0.218 7.218 26 C 0.149 3.851 27 F -0.139 7.139 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.031 0.969 32 H 0.045 0.955 33 H 0.369 0.631 34 H 0.249 0.751 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.164 0.836 39 H 0.188 0.812 40 H 0.203 0.797 41 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.920 -9.833 -17.551 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.024 3.976 3 H 0.080 0.920 4 C 0.017 3.983 5 N -0.386 5.386 6 C -0.375 4.375 7 H 0.098 0.902 8 C -0.267 4.267 9 N -0.621 5.621 10 Si 0.804 3.196 11 H -0.207 1.207 12 H -0.229 1.229 13 H -0.195 1.195 14 N -0.316 5.316 15 C -0.082 4.082 16 C 0.336 3.664 17 O -0.466 6.466 18 C -0.197 4.197 19 C -0.069 4.069 20 C -0.144 4.144 21 C -0.030 4.030 22 C -0.232 4.232 23 C 0.257 3.743 24 F -0.194 7.194 25 F -0.199 7.199 26 C 0.129 3.871 27 F -0.118 7.118 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.201 0.799 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.181 0.819 39 H 0.205 0.795 40 H 0.220 0.780 41 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -9.859 -9.214 -17.268 21.915 hybrid contribution 0.959 1.065 0.946 1.717 sum -8.900 -8.149 -16.322 20.298 Atomic orbital electron populations 1.21973 0.90956 1.04021 1.03085 1.21360 0.96351 0.96269 0.83661 0.92012 1.21196 0.84174 0.98111 0.94784 1.42549 1.01982 1.69910 1.24160 1.19656 0.89939 1.28334 0.99592 0.90157 1.25600 0.97509 1.03042 1.00533 1.69890 1.06902 1.52829 1.32515 0.85112 0.77386 0.77988 0.79067 1.20662 1.22890 1.19471 1.47616 1.48996 1.13689 1.21318 1.22589 1.02674 0.79672 1.03219 1.18548 0.78419 0.86126 0.83288 1.90767 1.61064 1.17775 1.76970 1.20032 1.09676 0.96553 0.93411 1.22341 0.92380 0.90697 1.01492 1.21730 0.98223 1.03098 0.91362 1.21674 0.91707 0.89507 1.00157 1.20827 1.09404 0.97810 0.95178 1.21061 0.74808 0.84665 0.93766 1.92997 1.51553 1.86227 1.88624 1.93009 1.64953 1.66580 1.95378 1.17982 0.97291 0.77212 0.94649 1.91525 1.91792 1.31820 1.96633 0.89836 0.92344 0.89652 0.95159 0.93710 0.79950 0.94247 0.91906 0.88312 0.88160 0.81857 0.79460 0.78033 0.79234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.16 71.98 0.66 -2.80 16 2 C 0.13 4.50 2.80 44.99 0.13 4.63 16 3 H 0.06 2.69 6.90 -2.39 -0.02 2.67 16 4 C 0.14 5.73 5.56 86.38 0.48 6.21 16 5 N -0.74 -38.86 5.43 -343.46 -1.87 -40.72 16 6 C -0.24 -13.63 9.99 84.03 0.84 -12.79 16 7 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 8 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 9 N -0.97 -61.39 13.06 21.65 0.28 -61.11 16 10 Si 0.98 46.23 29.55 68.60 2.03 48.26 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 14 N -0.59 -20.20 2.24 -826.17 -1.85 -22.05 16 15 C 0.06 1.41 7.91 127.77 1.01 2.43 16 16 C 0.55 22.77 7.12 86.74 0.62 23.39 16 17 O -0.58 -30.26 15.13 -3.91 -0.06 -30.32 16 18 C -0.19 -6.58 5.46 -20.05 -0.11 -6.69 16 19 C -0.05 -1.25 7.49 22.52 0.17 -1.08 16 20 C -0.13 -1.90 10.03 22.23 0.22 -1.67 16 21 C -0.01 -0.17 9.66 22.31 0.22 0.05 16 22 C -0.23 -5.25 5.37 -19.85 -0.11 -5.36 16 23 C 0.31 6.07 5.16 71.24 0.37 6.43 16 24 F -0.21 -5.24 17.06 44.97 0.77 -4.47 16 25 F -0.22 -6.02 17.08 44.97 0.77 -5.25 16 26 C 0.15 5.05 7.07 22.67 0.16 5.21 16 27 F -0.14 -5.80 15.10 44.97 0.68 -5.12 16 28 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.63 6.70 -2.39 -0.02 1.61 16 31 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.60 7.84 -2.39 -0.02 1.58 16 33 H 0.37 21.67 7.06 -92.71 -0.65 21.01 16 34 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 35 H 0.06 1.65 7.21 -2.39 -0.02 1.63 16 36 H 0.10 1.76 6.46 -2.39 -0.02 1.75 16 37 H 0.10 1.92 5.05 -2.38 -0.01 1.91 16 38 H 0.16 3.86 4.63 -2.91 -0.01 3.85 16 39 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 40 H 0.20 0.28 7.94 -2.91 -0.02 0.26 16 41 H 0.19 1.17 7.87 -2.39 -0.02 1.15 16 Total: -1.00 -88.61 350.55 6.30 -82.31 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.44 Total: 24.40 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 5.12 Total: 14.08 kcal Atomic # 7 Polarization: -120.44 SS G_CDS: -3.44 Total: -123.88 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.06 Total: -30.32 kcal Atomic # 9 Polarization: -17.06 SS G_CDS: 2.21 Total: -14.84 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -88.61 6.30 -82.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753693100.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.918 kcal (2) G-P(sol) polarization free energy of solvation -88.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds