Wall clock time and date at job start Tue Mar 31 2020 16:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30489 * 126.18422 * 2 1 4 4 N 1.28665 * 109.51828 * 180.02562 * 3 2 1 5 5 C 1.31301 * 109.22282 * 359.97438 * 4 3 2 6 6 C 1.47637 * 126.37808 * 179.97438 * 5 4 3 7 7 C 1.39416 * 120.22448 * 173.83795 * 6 5 4 8 8 C 1.38002 * 119.99804 * 180.02562 * 7 6 5 9 9 C 1.38550 * 120.46417 * 0.02562 * 8 7 6 10 10 C 1.37948 * 120.45523 * 359.97438 * 9 8 7 11 11 C 1.39528 * 119.98567 * 0.02562 * 10 9 8 12 12 C 1.47490 * 120.22552 * 180.02562 * 11 10 9 13 13 O 1.21502 * 119.99810 * 128.19856 * 12 11 10 14 14 O 1.34753 * 119.99950 * 308.19123 * 12 11 10 15 15 C 1.45199 * 116.99912 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47062 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.47007 * 299.99628 * 16 15 14 18 18 C 1.53002 * 109.47426 * 59.99932 * 16 15 14 19 19 C 1.50700 * 109.47132 * 180.02562 * 16 15 14 20 20 H 1.07999 * 120.00158 * 359.97438 * 19 16 15 21 21 C 1.37872 * 120.00188 * 179.97438 * 19 16 15 22 22 N 1.31518 * 120.00005 * 359.97438 * 21 19 16 23 23 Si 1.86804 * 120.00311 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.46971 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47221 * 119.99687 * 23 21 19 26 26 H 1.48502 * 109.47064 * 240.00186 * 23 21 19 27 27 O 1.34332 * 126.17665 * 180.29097 * 2 1 3 28 28 H 1.09001 * 109.47418 * 89.96843 * 1 2 3 29 29 H 1.08997 * 109.47301 * 209.97374 * 1 2 3 30 30 H 1.09006 * 109.46822 * 329.97366 * 1 2 3 31 31 H 1.07998 * 119.99783 * 0.02562 * 7 6 5 32 32 H 1.07996 * 119.76458 * 179.97438 * 8 7 6 33 33 H 1.08001 * 119.76803 * 180.27868 * 9 8 7 34 34 H 1.07997 * 120.01336 * 180.02562 * 10 9 8 35 35 H 1.09003 * 109.47237 * 300.00018 * 15 14 12 36 36 H 1.08997 * 109.47123 * 60.00141 * 15 14 12 37 37 H 1.09002 * 109.46882 * 60.00374 * 17 16 15 38 38 H 1.09001 * 109.47341 * 179.97438 * 17 16 15 39 39 H 1.09005 * 109.47533 * 300.00423 * 17 16 15 40 40 H 1.09000 * 109.46572 * 59.99944 * 18 16 15 41 41 H 1.08997 * 109.47214 * 179.97438 * 18 16 15 42 42 H 1.09000 * 109.46883 * 300.00516 * 18 16 15 43 43 H 0.97002 * 119.99827 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2773 1.0532 0.0000 4 7 3.5099 0.6842 -0.0005 5 6 3.5685 -0.6275 -0.0004 6 6 4.7951 -1.4492 -0.0014 7 6 4.7116 -2.8349 0.1283 8 6 5.8611 -3.5984 0.1273 9 6 7.1031 -2.9980 -0.0014 10 6 7.2077 -1.6286 -0.1308 11 6 6.0577 -0.8384 -0.1322 12 6 6.1634 0.6261 -0.2709 13 8 5.5090 1.2052 -1.1152 14 8 6.9855 1.3220 0.5389 15 6 7.0385 2.7601 0.3461 16 6 8.0184 3.3733 1.3485 17 6 7.5501 3.0666 2.7724 18 6 9.4108 2.7778 1.1301 19 6 8.0730 4.8660 1.1488 20 1 7.4695 5.3308 0.3833 21 6 8.8934 5.6383 1.9434 22 7 9.6280 5.0723 2.8760 23 14 8.9616 7.4885 1.6955 24 1 8.0477 7.8738 0.5903 25 1 8.5426 8.1713 2.9458 26 1 10.3493 7.8912 1.3527 27 8 2.2999 -1.0843 -0.0055 28 1 -0.3634 0.0006 -1.0277 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5143 31 1 3.7473 -3.3106 0.2295 32 1 5.7921 -4.6714 0.2284 33 1 7.9952 -3.6068 -0.0053 34 1 8.1794 -1.1681 -0.2311 35 1 7.3725 2.9787 -0.6682 36 1 6.0465 3.1843 0.5013 37 1 7.5103 1.9869 2.9171 38 1 8.2485 3.5030 3.4865 39 1 6.5582 3.4908 2.9280 40 1 9.7443 2.9963 0.1157 41 1 10.1090 3.2149 1.8439 42 1 9.3709 1.6981 1.2747 43 1 10.2050 5.6157 3.4353 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184809123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:24 Heat of formation + Delta-G solvation = -34.367856 kcal Electronic energy + Delta-G solvation = -28187.199794 eV Core-core repulsion = 24199.304625 eV Total energy + Delta-G solvation = -3987.895168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.30078 -41.59727 -39.92619 -38.19845 -37.34591 -36.57985 -34.55039 -33.35392 -32.53758 -32.30002 -29.00880 -27.76131 -27.60043 -27.21252 -25.86106 -24.68469 -23.85976 -22.92010 -21.85460 -20.73069 -19.35893 -18.64263 -18.53997 -17.86425 -17.78526 -17.48227 -17.08340 -16.68112 -16.16201 -15.75127 -15.46179 -15.08728 -14.95257 -14.72534 -14.58979 -14.32826 -13.87018 -13.71404 -13.63346 -13.55904 -13.35722 -13.21900 -13.03663 -12.90517 -12.78636 -12.62509 -12.42016 -12.34322 -12.15963 -12.02290 -11.69866 -11.65221 -11.32915 -11.26246 -11.18589 -10.75927 -10.42445 -10.18591 -9.73452 -8.06502 -6.24466 -0.84212 -0.04586 0.49278 0.98356 1.26760 1.36910 1.40379 1.42646 1.53546 1.77452 2.43839 2.58542 2.66848 3.16363 3.28098 3.54667 3.65472 3.81879 3.97266 4.15910 4.22552 4.23552 4.27570 4.29882 4.31622 4.49911 4.52053 4.60197 4.67075 4.79973 4.83936 4.99361 5.01632 5.08651 5.16669 5.20423 5.21073 5.28908 5.34003 5.56502 5.61068 5.63612 5.70668 6.04263 6.15090 6.35298 6.72730 6.80869 7.13189 7.43057 8.93707 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013429 B = 0.003477 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.507657 B = 8051.052410 C = 9648.911677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.175 3.825 3 N -0.338 5.338 4 N -0.292 5.292 5 C 0.184 3.816 6 C -0.009 4.009 7 C -0.080 4.080 8 C -0.078 4.078 9 C -0.082 4.082 10 C -0.079 4.079 11 C -0.091 4.091 12 C 0.491 3.509 13 O -0.509 6.509 14 O -0.346 6.346 15 C 0.104 3.896 16 C 0.063 3.937 17 C -0.115 4.115 18 C -0.116 4.116 19 C -0.536 4.536 20 H 0.044 0.956 21 C 0.030 3.970 22 N -0.898 5.898 23 Si 0.954 3.046 24 H -0.276 1.276 25 H -0.278 1.278 26 H -0.275 1.275 27 O -0.215 6.215 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.164 0.836 32 H 0.188 0.812 33 H 0.182 0.818 34 H 0.148 0.852 35 H 0.048 0.952 36 H 0.035 0.965 37 H 0.028 0.972 38 H 0.068 0.932 39 H 0.011 0.989 40 H 0.022 0.978 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.337 -24.193 -4.209 27.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.035 4.035 3 N -0.186 5.186 4 N -0.138 5.138 5 C -0.025 4.025 6 C -0.011 4.011 7 C -0.100 4.100 8 C -0.095 4.095 9 C -0.100 4.100 10 C -0.097 4.097 11 C -0.093 4.093 12 C 0.334 3.666 13 O -0.397 6.397 14 O -0.262 6.262 15 C 0.030 3.970 16 C 0.063 3.937 17 C -0.173 4.173 18 C -0.174 4.174 19 C -0.574 4.574 20 H 0.062 0.938 21 C -0.170 4.170 22 N -0.536 5.536 23 Si 0.779 3.221 24 H -0.201 1.201 25 H -0.204 1.204 26 H -0.200 1.200 27 O -0.095 6.095 28 H 0.140 0.860 29 H 0.143 0.857 30 H 0.135 0.865 31 H 0.181 0.819 32 H 0.206 0.794 33 H 0.199 0.801 34 H 0.166 0.834 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.030 0.970 40 H 0.041 0.959 41 H 0.085 0.915 42 H 0.053 0.947 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.053 -22.625 -4.314 25.995 hybrid contribution -0.425 0.921 -0.298 1.058 sum -12.478 -21.703 -4.612 25.456 Atomic orbital electron populations 1.20802 0.75373 1.07707 1.07220 1.29370 0.99560 0.78481 0.96047 1.74454 0.96411 1.27778 1.19930 1.75103 1.12651 1.09777 1.16254 1.25768 0.84805 0.90360 1.01568 1.17317 0.83927 0.93368 1.06503 1.21546 1.02413 0.88851 0.97165 1.21865 0.90235 1.02613 0.94810 1.21871 1.00487 0.92771 0.94832 1.21568 0.96470 0.95246 0.96418 1.19131 0.94748 0.88764 1.06671 1.21619 0.76422 0.89457 0.79074 1.90827 1.42039 1.71745 1.35107 1.86581 1.59749 1.23460 1.56445 1.23194 0.99546 0.74264 0.99987 1.18265 0.91259 0.93306 0.90868 1.21593 0.98642 0.97269 0.99750 1.21596 0.98837 0.97307 0.99625 1.21204 1.25703 0.91882 1.18573 0.93756 1.25497 0.94652 1.02345 0.94532 1.69938 1.26786 1.36200 1.20705 0.85581 0.77960 0.80602 0.77930 1.20100 1.20375 1.20002 1.84756 1.16126 1.38026 1.70583 0.85972 0.85668 0.86510 0.81859 0.79434 0.80054 0.83385 0.93405 0.94627 0.95284 0.91354 0.97005 0.95910 0.91530 0.94651 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.59 10.51 71.23 0.75 0.16 16 2 C 0.18 4.57 8.47 88.31 0.75 5.32 16 3 N -0.34 -12.81 12.22 -165.32 -2.02 -14.83 16 4 N -0.29 -12.43 8.50 -166.36 -1.41 -13.84 16 5 C 0.18 6.24 7.75 87.26 0.68 6.92 16 6 C -0.01 -0.26 5.90 -19.87 -0.12 -0.37 16 7 C -0.08 -1.31 9.72 22.50 0.22 -1.09 16 8 C -0.08 -0.76 10.02 22.29 0.22 -0.53 16 9 C -0.08 -0.99 10.02 22.28 0.22 -0.76 16 10 C -0.08 -1.75 9.76 22.51 0.22 -1.53 16 11 C -0.09 -2.87 5.79 -19.88 -0.12 -2.98 16 12 C 0.49 20.88 6.29 70.26 0.44 21.32 16 13 O -0.51 -24.87 14.18 19.83 0.28 -24.59 16 14 O -0.35 -15.79 8.87 -56.64 -0.50 -16.29 16 15 C 0.10 5.26 4.27 71.98 0.31 5.57 16 16 C 0.06 3.37 0.58 -52.93 -0.03 3.34 16 17 C -0.11 -6.03 8.11 71.98 0.58 -5.45 16 18 C -0.12 -5.80 8.11 71.98 0.58 -5.22 16 19 C -0.54 -30.80 8.01 25.60 0.21 -30.60 16 20 H 0.04 2.60 7.74 -2.91 -0.02 2.57 16 21 C 0.03 1.66 5.15 84.65 0.44 2.10 16 22 N -0.90 -50.44 9.35 21.45 0.20 -50.24 16 23 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 24 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 26 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 27 O -0.21 -5.76 10.68 -8.08 -0.09 -5.85 16 28 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.16 1.78 7.94 -2.91 -0.02 1.76 16 32 H 0.19 0.09 8.06 -2.91 -0.02 0.07 16 33 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16 34 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 35 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.03 1.39 7.68 -2.39 -0.02 1.37 16 38 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 39 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 40 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 42 H 0.03 1.58 7.68 -2.39 -0.02 1.56 16 43 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -83.43 365.78 4.87 -78.56 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: 1.03 Total: 4.32 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 5.35 Total: -3.82 kcal Atomic # 7 Polarization: -75.68 SS G_CDS: -3.23 Total: -78.92 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -0.31 Total: -46.72 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -83.43 4.87 -78.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184809123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.191 kcal (2) G-P(sol) polarization free energy of solvation -83.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds