Wall clock time and date at job start Tue Mar 31 2020 16:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47263 * 2 1 4 4 C 1.50695 * 109.51925 * 300.72544 * 3 2 1 5 5 C 1.38339 * 119.91439 * 123.87873 * 4 3 2 6 6 C 1.38057 * 120.08423 * 179.76366 * 5 4 3 7 7 C 1.39032 * 119.91560 * 0.49361 * 6 5 4 8 8 N 1.39526 * 120.08359 * 179.74296 * 7 6 5 9 9 C 1.34779 * 120.00031 * 213.73364 * 8 7 6 10 10 O 1.21734 * 119.99963 * 5.10469 * 9 8 7 11 11 C 1.46171 * 119.99990 * 185.10479 * 9 8 7 12 12 H 1.08005 * 120.00215 * 0.02562 * 11 9 8 13 13 C 1.40121 * 120.00013 * 180.02562 * 11 9 8 14 14 N 1.30633 * 120.00057 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99923 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47268 * 90.00012 * 15 13 11 17 17 H 1.48508 * 109.47002 * 210.00044 * 15 13 11 18 18 H 1.48493 * 109.47232 * 329.99545 * 15 13 11 19 19 C 1.39031 * 119.83365 * 359.76339 * 7 6 5 20 20 C 1.38066 * 119.91608 * 0.02562 * 19 7 6 21 21 C 1.53237 * 109.52442 * 60.91718 * 3 2 1 22 22 C 1.53276 * 108.55339 * 64.27828 * 21 3 2 23 23 C 1.50589 * 109.15603 * 55.62599 * 22 21 3 24 24 O 1.21226 * 119.35753 * 150.90643 * 23 22 21 25 25 N 1.34134 * 121.28084 * 330.88992 * 23 22 21 26 26 C 1.34146 * 122.59045 * 0.56365 * 25 23 22 27 27 O 1.21229 * 119.36170 * 179.46199 * 26 25 23 28 28 H 1.09002 * 109.47304 * 300.36851 * 1 2 3 29 29 H 1.08998 * 109.47108 * 60.36767 * 1 2 3 30 30 H 1.09004 * 109.47505 * 180.36319 * 1 2 3 31 31 H 1.08999 * 109.47073 * 239.99759 * 2 1 3 32 32 H 1.09008 * 109.47034 * 119.99758 * 2 1 3 33 33 H 1.08002 * 119.95402 * 0.02562 * 5 4 3 34 34 H 1.07999 * 120.04663 * 180.25698 * 6 5 4 35 35 H 0.97005 * 120.00106 * 33.73929 * 8 7 6 36 36 H 0.97003 * 120.00020 * 179.97438 * 14 13 11 37 37 H 1.08003 * 120.04145 * 179.97438 * 19 7 6 38 38 H 1.07993 * 119.96104 * 180.02562 * 20 19 7 39 39 H 1.08996 * 109.62244 * 184.01084 * 21 3 2 40 40 H 1.09003 * 109.62073 * 304.57131 * 21 3 2 41 41 H 1.08997 * 109.52189 * 295.71990 * 22 21 3 42 42 H 1.09004 * 109.52329 * 175.52980 * 22 21 3 43 43 H 0.97002 * 118.71006 * 180.54917 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5237 2.1591 -1.2210 5 6 0.7981 3.3284 -1.0793 6 6 0.3275 3.9904 -2.1957 7 6 0.5749 3.4750 -3.4631 8 7 0.0965 4.1384 -4.5935 9 6 -0.2918 3.4334 -5.6746 10 8 -0.3131 2.2170 -5.6326 11 6 -0.6872 4.1295 -6.8976 12 1 -0.6679 5.2087 -6.9351 13 6 -1.0913 3.3966 -8.0214 14 7 -1.1142 2.0912 -7.9763 15 14 -1.5959 4.2861 -9.5846 16 1 -0.4047 4.4820 -10.4493 17 1 -2.6069 3.4761 -10.3107 18 1 -2.1776 5.6074 -9.2365 19 6 1.3000 2.2968 -3.6012 20 6 1.7710 1.6428 -2.4802 21 6 1.5488 2.1594 1.2622 22 6 2.1764 1.4799 2.4844 23 6 3.6748 1.4792 2.3343 24 8 4.3715 1.4996 3.3262 25 7 4.2536 1.4563 1.1245 26 6 3.5458 1.4438 -0.0150 27 8 4.1297 1.4330 -1.0773 28 1 -0.3634 0.5195 0.8867 29 1 -0.3633 0.5081 -0.8932 30 1 -0.3634 -1.0277 0.0065 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 0.6031 3.7261 -0.0943 34 1 -0.2353 4.9054 -2.0846 35 1 0.0433 5.1069 -4.6013 36 1 -1.3944 1.5839 -8.7542 37 1 1.4938 1.8933 -4.5841 38 1 2.3346 0.7278 -2.5867 39 1 1.8510 3.2061 1.2296 40 1 0.4627 2.0907 1.3229 41 1 1.8169 0.4534 2.5551 42 1 1.9009 2.0263 3.3865 43 1 5.2221 1.4485 1.0714 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273887177.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:03 Heat of formation + Delta-G solvation = -88.990329 kcal Electronic energy + Delta-G solvation = -28252.533064 eV Core-core repulsion = 24262.269288 eV Total energy + Delta-G solvation = -3990.263776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.05914 -39.63971 -38.82502 -37.60293 -36.21846 -34.83707 -33.25548 -32.45854 -31.90661 -30.35471 -29.70452 -27.43204 -25.97176 -25.14238 -23.37922 -22.46864 -22.02476 -21.35519 -19.86229 -18.49055 -17.77462 -17.63390 -17.32523 -16.70563 -16.37772 -15.59491 -15.37686 -15.28413 -15.07828 -14.66191 -14.40766 -14.02356 -13.95291 -13.80384 -13.19604 -13.05627 -12.87884 -12.67526 -12.44700 -12.29028 -12.20098 -11.95473 -11.78639 -11.42188 -11.24765 -11.13756 -11.09751 -10.75065 -10.64832 -10.57869 -10.44074 -10.40328 -10.35908 -10.09023 -9.28188 -8.89875 -8.39255 -7.77602 -7.08217 -6.37346 -4.84645 1.30828 1.83369 1.99461 2.57588 2.60897 3.05463 3.12594 3.15709 3.71415 3.96864 4.15096 4.19923 4.25481 4.40130 4.54573 4.59369 4.67804 4.77512 5.00656 5.15465 5.18977 5.30494 5.37684 5.41693 5.46115 5.58434 5.62425 5.65228 5.81853 5.84708 5.95646 6.01566 6.21332 6.25842 6.33312 6.56422 6.61549 6.82044 7.07289 7.10987 7.16129 7.25692 7.40429 7.65115 7.71696 8.03515 8.15223 8.82558 9.18752 10.35838 10.54057 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.029196 B = 0.002608 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.817311 B =10734.479453 C =10768.926587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.108 4.108 3 C -0.021 4.021 4 C -0.130 4.130 5 C -0.092 4.092 6 C -0.181 4.181 7 C 0.202 3.798 8 N -0.701 5.701 9 C 0.543 3.457 10 O -0.558 6.558 11 C -0.539 4.539 12 H 0.072 0.928 13 C 0.086 3.914 14 N -0.759 5.759 15 Si 0.912 3.088 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.264 1.264 19 C -0.131 4.131 20 C -0.061 4.061 21 C -0.122 4.122 22 C -0.145 4.145 23 C 0.527 3.473 24 O -0.512 6.512 25 N -0.676 5.676 26 C 0.528 3.472 27 O -0.479 6.479 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.393 0.607 36 H 0.272 0.728 37 H 0.138 0.862 38 H 0.116 0.884 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.473 -0.498 18.628 18.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C -0.024 4.024 4 C -0.131 4.131 5 C -0.110 4.110 6 C -0.203 4.203 7 C 0.103 3.897 8 N -0.343 5.343 9 C 0.349 3.651 10 O -0.440 6.440 11 C -0.575 4.575 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.387 5.387 15 Si 0.737 3.263 16 H -0.196 1.196 17 H -0.203 1.203 18 H -0.188 1.188 19 C -0.152 4.152 20 C -0.080 4.080 21 C -0.159 4.159 22 C -0.184 4.184 23 C 0.316 3.684 24 O -0.386 6.386 25 N -0.341 5.341 26 C 0.316 3.684 27 O -0.348 6.348 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.226 0.774 36 H 0.083 0.917 37 H 0.155 0.845 38 H 0.134 0.866 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 3.823 -1.534 18.372 18.829 hybrid contribution 0.239 0.951 -0.857 1.302 sum 4.063 -0.583 17.515 17.990 Atomic orbital electron populations 1.21809 0.93772 1.02116 1.03138 1.21588 0.97960 0.92252 1.02766 1.19636 0.88769 0.98203 0.95795 1.18768 1.04926 0.97414 0.92033 1.20630 0.98186 0.94419 0.97787 1.20799 1.05510 1.02709 0.91257 1.18056 0.91165 0.93295 0.87181 1.44213 1.66339 1.09614 1.14180 1.18377 0.77605 0.87180 0.81912 1.90641 1.57182 1.13630 1.82530 1.20861 1.47222 0.93936 0.95432 0.91022 1.25741 0.93323 0.94632 0.99791 1.69980 1.32949 1.06295 1.29443 0.86287 0.78891 0.80036 0.81119 1.19561 1.20283 1.18783 1.21309 0.97664 0.96364 0.99826 1.20738 0.97036 0.99011 0.91197 1.22044 1.03220 0.99973 0.90704 1.22026 0.89552 1.05263 1.01608 1.21027 0.92152 0.73221 0.82003 1.90778 1.65364 1.45630 1.36822 1.44928 1.12805 1.68665 1.07713 1.20998 0.90961 0.73712 0.82777 1.90801 1.71591 1.43060 1.29358 0.92324 0.91047 0.92324 0.90462 0.91681 0.86400 0.86508 0.77373 0.91715 0.84465 0.86560 0.89843 0.87791 0.86833 0.86726 0.75115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.34 37.15 0.35 -1.02 16 2 C -0.11 -1.00 4.49 -26.73 -0.12 -1.12 16 3 C -0.02 -0.22 0.39 -156.74 -0.06 -0.28 16 4 C -0.13 -1.81 3.34 -104.55 -0.35 -2.16 16 5 C -0.09 -1.23 9.01 -39.61 -0.36 -1.59 16 6 C -0.18 -2.91 9.97 -39.35 -0.39 -3.30 16 7 C 0.20 4.08 6.27 -83.77 -0.53 3.56 16 8 N -0.70 -15.36 5.32 -11.20 -0.06 -15.42 16 9 C 0.54 14.74 7.47 -13.08 -0.10 14.64 16 10 O -0.56 -17.04 12.71 5.16 0.07 -16.97 16 11 C -0.54 -14.47 9.54 -35.69 -0.34 -14.81 16 12 H 0.07 1.75 7.85 -52.48 -0.41 1.34 16 13 C 0.09 2.30 5.50 -17.36 -0.10 2.21 16 14 N -0.76 -21.73 11.82 55.55 0.66 -21.08 16 15 Si 0.91 19.27 29.56 -169.99 -5.02 14.25 16 16 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 17 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 19 C -0.13 -2.74 8.65 -39.35 -0.34 -3.08 16 20 C -0.06 -1.06 7.95 -39.61 -0.31 -1.37 16 21 C -0.12 -0.87 3.31 -26.47 -0.09 -0.96 16 22 C -0.15 -0.88 5.70 -27.79 -0.16 -1.04 16 23 C 0.53 4.89 7.74 -11.33 -0.09 4.80 16 24 O -0.51 -6.34 17.87 5.60 0.10 -6.24 16 25 N -0.68 -6.60 5.09 -11.75 -0.06 -6.66 16 26 C 0.53 6.23 6.69 -11.32 -0.08 6.15 16 27 O -0.48 -7.43 15.63 5.60 0.09 -7.34 16 28 H 0.06 0.41 6.34 -51.93 -0.33 0.08 16 29 H 0.07 0.85 7.21 -51.93 -0.37 0.48 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.83 7.19 -51.93 -0.37 0.46 16 32 H 0.06 0.46 6.53 -51.92 -0.34 0.12 16 33 H 0.12 1.17 5.89 -52.49 -0.31 0.87 16 34 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.39 7.36 8.80 -40.82 -0.36 7.00 16 36 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 37 H 0.14 3.35 6.44 -52.48 -0.34 3.01 16 38 H 0.12 1.96 6.81 -52.49 -0.36 1.60 16 39 H 0.08 0.59 7.07 -51.93 -0.37 0.23 16 40 H 0.10 0.61 6.05 -51.93 -0.31 0.29 16 41 H 0.11 0.52 6.67 -51.93 -0.35 0.17 16 42 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.41 3.73 8.79 -40.82 -0.36 3.37 16 LS Contribution 348.96 15.07 5.26 5.26 Total: -1.00 -35.01 348.96 -7.01 -42.02 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -4.98 Total: 11.57 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -3.06 Total: 0.63 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.54 Total: -43.16 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: 0.25 Total: -30.56 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.01 -7.01 -42.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273887177.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.969 kcal (2) G-P(sol) polarization free energy of solvation -35.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds