Wall clock time and date at job start Tue Mar 31 2020 16:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47263 * 2 1 4 4 C 1.50695 * 109.51925 * 300.72544 * 3 2 1 5 5 C 1.38339 * 119.91439 * 123.87873 * 4 3 2 6 6 C 1.38057 * 120.08423 * 179.76366 * 5 4 3 7 7 C 1.39032 * 119.91560 * 0.49361 * 6 5 4 8 8 N 1.39526 * 120.08359 * 179.74296 * 7 6 5 9 9 C 1.34779 * 120.00031 * 213.73364 * 8 7 6 10 10 O 1.21734 * 119.99963 * 5.10469 * 9 8 7 11 11 C 1.46171 * 119.99990 * 185.10479 * 9 8 7 12 12 H 1.08005 * 120.00215 * 0.02562 * 11 9 8 13 13 C 1.40121 * 120.00013 * 180.02562 * 11 9 8 14 14 N 1.30633 * 120.00057 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99923 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47268 * 90.00012 * 15 13 11 17 17 H 1.48508 * 109.47002 * 210.00044 * 15 13 11 18 18 H 1.48493 * 109.47232 * 329.99545 * 15 13 11 19 19 C 1.39031 * 119.83365 * 359.76339 * 7 6 5 20 20 C 1.38066 * 119.91608 * 0.02562 * 19 7 6 21 21 C 1.53237 * 109.52442 * 60.91718 * 3 2 1 22 22 C 1.53276 * 108.55339 * 64.27828 * 21 3 2 23 23 C 1.50589 * 109.15603 * 55.62599 * 22 21 3 24 24 O 1.21226 * 119.35753 * 150.90643 * 23 22 21 25 25 N 1.34134 * 121.28084 * 330.88992 * 23 22 21 26 26 C 1.34146 * 122.59045 * 0.56365 * 25 23 22 27 27 O 1.21229 * 119.36170 * 179.46199 * 26 25 23 28 28 H 1.09002 * 109.47304 * 300.36851 * 1 2 3 29 29 H 1.08998 * 109.47108 * 60.36767 * 1 2 3 30 30 H 1.09004 * 109.47505 * 180.36319 * 1 2 3 31 31 H 1.08999 * 109.47073 * 239.99759 * 2 1 3 32 32 H 1.09008 * 109.47034 * 119.99758 * 2 1 3 33 33 H 1.08002 * 119.95402 * 0.02562 * 5 4 3 34 34 H 1.07999 * 120.04663 * 180.25698 * 6 5 4 35 35 H 0.97005 * 120.00106 * 33.73929 * 8 7 6 36 36 H 0.97003 * 120.00020 * 179.97438 * 14 13 11 37 37 H 1.08003 * 120.04145 * 179.97438 * 19 7 6 38 38 H 1.07993 * 119.96104 * 180.02562 * 20 19 7 39 39 H 1.08996 * 109.62244 * 184.01084 * 21 3 2 40 40 H 1.09003 * 109.62073 * 304.57131 * 21 3 2 41 41 H 1.08997 * 109.52189 * 295.71990 * 22 21 3 42 42 H 1.09004 * 109.52329 * 175.52980 * 22 21 3 43 43 H 0.97002 * 118.71006 * 180.54917 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5237 2.1591 -1.2210 5 6 0.7981 3.3284 -1.0793 6 6 0.3275 3.9904 -2.1957 7 6 0.5749 3.4750 -3.4631 8 7 0.0965 4.1384 -4.5935 9 6 -0.2918 3.4334 -5.6746 10 8 -0.3131 2.2170 -5.6326 11 6 -0.6872 4.1295 -6.8976 12 1 -0.6679 5.2087 -6.9351 13 6 -1.0913 3.3966 -8.0214 14 7 -1.1142 2.0912 -7.9763 15 14 -1.5959 4.2861 -9.5846 16 1 -0.4047 4.4820 -10.4493 17 1 -2.6069 3.4761 -10.3107 18 1 -2.1776 5.6074 -9.2365 19 6 1.3000 2.2968 -3.6012 20 6 1.7710 1.6428 -2.4802 21 6 1.5488 2.1594 1.2622 22 6 2.1764 1.4799 2.4844 23 6 3.6748 1.4792 2.3343 24 8 4.3715 1.4996 3.3262 25 7 4.2536 1.4563 1.1245 26 6 3.5458 1.4438 -0.0150 27 8 4.1297 1.4330 -1.0773 28 1 -0.3634 0.5195 0.8867 29 1 -0.3633 0.5081 -0.8932 30 1 -0.3634 -1.0277 0.0065 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 0.6031 3.7261 -0.0943 34 1 -0.2353 4.9054 -2.0846 35 1 0.0433 5.1069 -4.6013 36 1 -1.3944 1.5839 -8.7542 37 1 1.4938 1.8933 -4.5841 38 1 2.3346 0.7278 -2.5867 39 1 1.8510 3.2061 1.2296 40 1 0.4627 2.0907 1.3229 41 1 1.8169 0.4534 2.5551 42 1 1.9009 2.0263 3.3865 43 1 5.2221 1.4485 1.0714 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273887177.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:02 Heat of formation + Delta-G solvation = -115.650166 kcal Electronic energy + Delta-G solvation = -28253.689122 eV Core-core repulsion = 24262.269288 eV Total energy + Delta-G solvation = -3991.419834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.93257 -40.88814 -40.03499 -39.01563 -37.45472 -35.87789 -34.93613 -34.40844 -32.64673 -31.63906 -30.92830 -28.90343 -27.57145 -25.89798 -24.34255 -23.67914 -23.23496 -22.45425 -21.52345 -19.49026 -19.36765 -18.59684 -18.26880 -18.04030 -17.54899 -17.35795 -16.46315 -16.22241 -16.13361 -15.84898 -15.59821 -15.40146 -15.21071 -14.78054 -14.63602 -14.50880 -14.08090 -14.00607 -13.55894 -13.35522 -13.31162 -13.01937 -12.97015 -12.80048 -12.72574 -12.59201 -12.24865 -12.14040 -12.04250 -11.62388 -11.52697 -11.34042 -11.22847 -11.07875 -11.03882 -10.72575 -9.97240 -9.65391 -8.68177 -8.37513 -6.95296 0.41370 0.53072 0.62949 1.38686 1.39892 1.55641 1.76381 1.77959 2.20207 2.37306 2.84448 2.97508 3.11268 3.40591 3.49643 3.58465 3.71695 3.94686 4.08035 4.14692 4.20984 4.35264 4.49380 4.50810 4.61849 4.69823 4.80562 4.80771 4.90449 4.95880 5.05018 5.11017 5.15392 5.19151 5.24452 5.32750 5.46609 5.54786 5.56874 5.71346 5.81087 5.84463 5.99853 6.17384 6.36455 6.44532 6.77118 6.81011 7.35061 8.35994 8.56390 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.029196 B = 0.002608 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.817311 B =10734.479453 C =10768.926587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.020 4.020 4 C -0.110 4.110 5 C -0.077 4.077 6 C -0.169 4.169 7 C 0.163 3.837 8 N -0.695 5.695 9 C 0.529 3.471 10 O -0.606 6.606 11 C -0.566 4.566 12 H 0.093 0.907 13 C 0.028 3.972 14 N -0.814 5.814 15 Si 1.001 2.999 16 H -0.263 1.263 17 H -0.272 1.272 18 H -0.246 1.246 19 C -0.164 4.164 20 C -0.068 4.068 21 C -0.120 4.120 22 C -0.135 4.135 23 C 0.529 3.471 24 O -0.543 6.543 25 N -0.672 5.672 26 C 0.534 3.466 27 O -0.527 6.527 28 H 0.093 0.907 29 H 0.035 0.965 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.097 0.903 33 H 0.174 0.826 34 H 0.147 0.853 35 H 0.407 0.593 36 H 0.277 0.723 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.132 0.868 41 H 0.138 0.862 42 H 0.142 0.858 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.077 1.407 22.197 22.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.023 4.023 4 C -0.111 4.111 5 C -0.095 4.095 6 C -0.190 4.190 7 C 0.065 3.935 8 N -0.339 5.339 9 C 0.336 3.664 10 O -0.492 6.492 11 C -0.602 4.602 12 H 0.111 0.889 13 C -0.188 4.188 14 N -0.443 5.443 15 Si 0.820 3.180 16 H -0.188 1.188 17 H -0.197 1.197 18 H -0.169 1.169 19 C -0.186 4.186 20 C -0.087 4.087 21 C -0.157 4.157 22 C -0.174 4.174 23 C 0.320 3.680 24 O -0.418 6.418 25 N -0.336 5.336 26 C 0.323 3.677 27 O -0.400 6.400 28 H 0.111 0.889 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.191 0.809 34 H 0.165 0.835 35 H 0.243 0.757 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.125 0.875 39 H 0.112 0.888 40 H 0.150 0.850 41 H 0.156 0.844 42 H 0.160 0.840 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 2.443 0.405 22.020 22.159 hybrid contribution 0.808 0.278 -1.767 1.962 sum 3.251 0.683 20.253 20.524 Atomic orbital electron populations 1.21807 0.93153 1.02685 1.02945 1.21621 0.98357 0.91462 1.03139 1.19740 0.87637 0.99059 0.95879 1.19138 1.02838 0.97204 0.91956 1.21218 0.95807 0.93098 0.99357 1.21154 1.04610 1.03383 0.89813 1.18320 0.93039 0.93828 0.88284 1.43718 1.66247 1.10058 1.13899 1.18729 0.77378 0.86900 0.83441 1.90600 1.59118 1.15684 1.83784 1.21417 1.47653 0.95140 0.96011 0.88930 1.27022 0.92514 0.95323 1.03912 1.70154 1.34435 1.08671 1.31052 0.84963 0.78631 0.78995 0.75401 1.18792 1.19651 1.16894 1.21028 1.00684 0.98210 0.98640 1.20708 0.97166 0.98824 0.92033 1.22154 1.04863 1.00042 0.88629 1.22139 0.86186 1.07069 1.01967 1.21743 0.93600 0.71778 0.80855 1.90783 1.66464 1.47057 1.37526 1.44936 1.12952 1.67998 1.07676 1.21243 0.91566 0.72475 0.82442 1.90807 1.72546 1.45441 1.31188 0.88875 0.94572 0.91710 0.93168 0.88421 0.80885 0.83507 0.75739 0.91289 0.89897 0.87488 0.88836 0.85008 0.84445 0.83963 0.75133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.34 71.98 0.67 -1.59 16 2 C -0.11 -1.75 4.49 30.59 0.14 -1.62 16 3 C -0.02 -0.36 0.39 -53.63 -0.02 -0.38 16 4 C -0.11 -2.92 3.34 -19.82 -0.07 -2.98 16 5 C -0.08 -1.80 9.01 22.25 0.20 -1.60 16 6 C -0.17 -5.11 9.97 22.42 0.22 -4.89 16 7 C 0.16 6.85 6.27 38.30 0.24 7.09 16 8 N -0.69 -32.00 5.32 -307.54 -1.64 -33.64 16 9 C 0.53 30.61 7.47 86.30 0.65 31.26 16 10 O -0.61 -40.23 12.71 -4.46 -0.06 -40.28 16 11 C -0.57 -31.57 9.54 24.79 0.24 -31.33 16 12 H 0.09 4.57 7.85 -2.91 -0.02 4.54 16 13 C 0.03 1.56 5.50 85.33 0.47 2.03 16 14 N -0.81 -49.22 11.82 21.85 0.26 -48.97 16 15 Si 1.00 40.11 29.56 68.60 2.03 42.14 16 16 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 17 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 18 H -0.25 -9.05 7.11 99.48 0.71 -8.34 16 19 C -0.16 -7.58 8.65 22.42 0.19 -7.38 16 20 C -0.07 -2.54 7.95 22.25 0.18 -2.36 16 21 C -0.12 -1.00 3.31 30.77 0.10 -0.90 16 22 C -0.13 -0.84 5.70 29.91 0.17 -0.67 16 23 C 0.53 7.93 7.74 87.72 0.68 8.61 16 24 O -0.54 -11.90 17.87 -2.86 -0.05 -11.95 16 25 N -0.67 -11.82 5.09 -428.63 -2.18 -14.00 16 26 C 0.53 11.90 6.69 87.72 0.59 12.48 16 27 O -0.53 -16.83 15.63 -2.87 -0.04 -16.87 16 28 H 0.09 0.76 6.34 -2.39 -0.02 0.75 16 29 H 0.04 0.81 7.21 -2.39 -0.02 0.80 16 30 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.05 1.10 7.19 -2.39 -0.02 1.08 16 32 H 0.10 0.98 6.53 -2.38 -0.02 0.96 16 33 H 0.17 2.23 5.89 -2.91 -0.02 2.21 16 34 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.41 15.62 8.80 -92.70 -0.82 14.80 16 36 H 0.28 15.15 8.29 -92.71 -0.77 14.38 16 37 H 0.08 4.65 6.44 -2.91 -0.02 4.63 16 38 H 0.11 4.03 6.81 -2.91 -0.02 4.01 16 39 H 0.09 0.69 7.07 -2.39 -0.02 0.67 16 40 H 0.13 0.51 6.05 -2.39 -0.01 0.49 16 41 H 0.14 0.32 6.67 -2.39 -0.02 0.30 16 42 H 0.14 0.31 8.14 -2.38 -0.02 0.29 16 43 H 0.41 7.13 8.79 -92.71 -0.81 6.32 16 Total: -1.00 -87.14 348.96 2.43 -84.71 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: -0.53 Total: 33.09 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 4.65 Total: 5.77 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -3.56 Total: -96.60 kcal Atomic # 8 Polarization: -68.95 SS G_CDS: -0.15 Total: -69.11 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -87.14 2.43 -84.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273887177.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.943 kcal (2) G-P(sol) polarization free energy of solvation -87.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds