Wall clock time and date at job start Tue Mar 31 2020 15:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99647 * 2 1 4 4 O 1.42898 * 109.47171 * 75.00496 * 3 2 1 5 5 C 1.35809 * 117.00517 * 75.00000 * 4 3 2 6 6 C 1.38956 * 119.91200 * 179.97438 * 5 4 3 7 7 C 1.37771 * 120.09317 * 179.97438 * 6 5 4 8 8 C 1.50697 * 120.04856 * 179.97438 * 7 6 5 9 9 C 1.39730 * 119.90299 * 359.97438 * 7 6 5 10 10 C 1.47792 * 120.08789 * 179.97438 * 9 7 6 11 11 C 1.39122 * 120.32509 * 89.99962 * 10 9 7 12 12 C 1.38333 * 119.95800 * 179.69809 * 11 10 9 13 13 F 1.35099 * 119.69360 * 180.30402 * 12 11 10 14 14 C 1.39244 * 120.61831 * 0.28219 * 12 11 10 15 15 C 1.36332 * 120.66186 * 359.97438 * 14 12 11 16 16 C 1.40798 * 120.02036 * 0.02562 * 15 14 12 17 17 C 1.40797 * 120.30338 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99900 * 154.04985 * 17 16 15 19 19 C 1.40017 * 120.00187 * 334.05739 * 17 16 15 20 20 N 1.30822 * 119.99938 * 343.62267 * 19 17 16 21 21 Si 1.86802 * 120.00026 * 163.62139 * 19 17 16 22 22 H 1.48501 * 109.47094 * 59.99989 * 21 19 17 23 23 H 1.48501 * 109.47131 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47256 * 299.99877 * 21 19 17 25 25 C 1.39718 * 119.82037 * 0.25326 * 9 7 6 26 26 C 1.50703 * 120.04600 * 179.74527 * 25 9 7 27 27 C 1.37768 * 119.90556 * 359.50929 * 25 9 7 28 28 H 1.09003 * 109.46840 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46826 * 299.99719 * 1 2 3 30 30 H 1.08992 * 109.47319 * 59.99933 * 1 2 3 31 31 H 1.09008 * 109.47227 * 315.00233 * 3 2 1 32 32 H 1.09000 * 109.46960 * 195.00261 * 3 2 1 33 33 H 1.07997 * 119.95655 * 359.97438 * 6 5 4 34 34 H 1.08997 * 109.47098 * 269.98486 * 8 7 6 35 35 H 1.09003 * 109.46602 * 29.98561 * 8 7 6 36 36 H 1.09003 * 109.47310 * 149.97956 * 8 7 6 37 37 H 1.08006 * 120.02099 * 359.97438 * 11 10 9 38 38 H 1.07994 * 119.67268 * 180.02562 * 14 12 11 39 39 H 1.07998 * 119.98932 * 180.02562 * 15 14 12 40 40 H 0.96994 * 119.99763 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.47359 * 90.00125 * 26 25 9 42 42 H 1.09003 * 109.47205 * 210.00119 * 26 25 9 43 43 H 1.09003 * 109.47119 * 329.99559 * 26 25 9 44 44 H 1.08008 * 119.94891 * 180.20686 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8854 1.8824 1.3014 5 6 2.7183 1.4135 2.2662 6 6 2.6491 1.9324 3.5534 7 6 3.4918 1.4590 4.5352 8 6 3.4164 2.0229 5.9307 9 6 4.4166 0.4554 4.2351 10 6 5.3229 -0.0549 5.2850 11 6 4.9426 -1.1328 6.0782 12 6 5.7995 -1.6083 7.0546 13 9 5.4273 -2.6592 7.8176 14 6 7.0423 -1.0142 7.2580 15 6 7.4384 0.0466 6.4988 16 6 6.5879 0.5528 5.4974 17 6 6.9912 1.6478 4.7095 18 1 6.5836 1.7789 3.7180 19 6 7.9209 2.5667 5.2113 20 7 8.1742 2.6066 6.4941 21 14 8.7997 3.7356 4.0489 22 1 7.8002 4.5822 3.3492 23 1 9.7262 4.6000 4.8232 24 1 9.5717 2.9532 3.0502 25 6 4.4861 -0.0602 2.9384 26 6 5.4854 -1.1386 2.6078 27 6 3.6364 0.4153 1.9637 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.4940 1.9330 -0.7267 32 1 3.0648 1.2337 -0.2660 33 1 1.9338 2.7078 3.7846 34 1 4.0926 2.8734 6.0159 35 1 2.3964 2.3475 6.1367 36 1 3.7054 1.2554 6.6488 37 1 3.9808 -1.6009 5.9288 38 1 7.6994 -1.3981 8.0242 39 1 8.4049 0.4989 6.6656 40 1 8.8185 3.2429 6.8416 41 1 5.0341 -2.1163 2.7763 42 1 5.7823 -1.0508 1.5626 43 1 6.3629 -1.0287 3.2451 44 1 3.6872 0.0148 0.9619 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244769228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:30 Heat of formation + Delta-G solvation = -104.374556 kcal Electronic energy + Delta-G solvation = -28459.202341 eV Core-core repulsion = 24448.351493 eV Total energy + Delta-G solvation = -4010.850848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -47.46545 -40.07065 -38.60736 -37.18876 -36.16442 -33.68439 -32.95094 -31.41209 -29.45646 -28.90672 -27.87704 -26.52696 -26.22613 -25.21610 -24.73095 -21.97754 -21.06147 -20.16795 -19.80520 -17.57192 -17.41760 -16.90046 -16.68051 -16.30250 -15.46887 -15.21687 -14.82282 -14.64233 -14.33094 -14.20178 -13.93852 -13.75845 -13.46859 -13.00250 -12.85911 -12.67832 -12.51478 -12.50269 -12.11893 -11.97320 -11.91621 -11.75916 -11.48904 -11.29182 -11.18619 -11.17440 -10.88642 -10.83523 -10.52644 -10.35373 -10.34581 -10.06171 -9.95178 -9.50426 -9.23904 -8.03729 -7.64110 -7.40909 -7.33167 -6.90801 -4.45720 1.94688 2.01905 2.57251 2.74753 2.99966 3.02931 3.09840 3.39757 3.62108 3.83540 4.31419 4.43715 4.84599 5.04129 5.15609 5.26237 5.31461 5.40969 5.45912 5.53761 5.60483 5.70618 5.82834 5.99538 6.03393 6.08652 6.15815 6.21262 6.26914 6.31002 6.39926 6.47981 6.69534 6.72634 6.84983 6.88776 6.93097 6.95903 7.10208 7.11518 7.29348 7.40114 7.43719 7.60340 7.79732 7.83890 7.91371 8.10700 8.45199 8.71293 8.79198 10.02134 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.010519 B = 0.004643 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.111857 B = 6029.087500 C = 7580.910558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.394 6.394 3 C 0.213 3.787 4 O -0.336 6.336 5 C 0.111 3.889 6 C -0.160 4.160 7 C -0.033 4.033 8 C -0.106 4.106 9 C -0.013 4.013 10 C -0.150 4.150 11 C -0.098 4.098 12 C -0.049 4.049 13 F -0.175 7.175 14 C -0.126 4.126 15 C -0.140 4.140 16 C 0.124 3.876 17 C -0.440 4.440 18 H 0.082 0.918 19 C 0.078 3.922 20 N -0.786 5.786 21 Si 0.905 3.095 22 H -0.264 1.264 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.041 4.041 26 C -0.109 4.109 27 C -0.203 4.203 28 H 0.085 0.915 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.126 0.874 40 H 0.284 0.716 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.975 0.053 -9.365 12.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.314 6.314 3 C 0.100 3.900 4 O -0.253 6.253 5 C 0.067 3.933 6 C -0.179 4.179 7 C -0.033 4.033 8 C -0.163 4.163 9 C -0.013 4.013 10 C -0.152 4.152 11 C -0.117 4.117 12 C -0.068 4.068 13 F -0.155 7.155 14 C -0.145 4.145 15 C -0.159 4.159 16 C 0.121 3.879 17 C -0.469 4.469 18 H 0.100 0.900 19 C -0.142 4.142 20 N -0.410 5.410 21 Si 0.729 3.271 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.187 1.187 25 C -0.041 4.041 26 C -0.166 4.166 27 C -0.222 4.222 28 H 0.103 0.897 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.137 0.863 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.144 0.856 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.879 0.142 -9.144 12.071 hybrid contribution 0.247 0.570 -0.486 0.789 sum -7.632 0.712 -9.630 12.308 Atomic orbital electron populations 1.22783 0.80602 1.02838 1.00334 1.88069 1.20732 1.28882 1.93719 1.24090 0.99627 0.83022 0.83270 1.86128 1.58316 1.60818 1.19995 1.18808 0.91027 0.94987 0.88444 1.20061 1.03580 1.03925 0.90303 1.19797 0.93674 0.94483 0.95344 1.20700 1.00678 1.01860 0.93019 1.18358 0.95094 0.95468 0.92389 1.18141 0.94829 1.01252 1.00970 1.20470 0.97855 0.97393 0.96020 1.17150 0.97550 0.92825 0.99322 1.91281 1.92250 1.56397 1.75544 1.20464 0.94798 0.98293 1.00964 1.20927 1.00627 0.95745 0.98590 1.17516 0.88491 0.91030 0.90852 1.19472 1.19543 1.05994 1.01844 0.90005 1.25944 0.95275 0.97782 0.95161 1.69784 1.26937 1.31322 1.12975 0.86394 0.79750 0.79934 0.81012 1.18816 1.20227 1.18657 1.19820 0.95440 0.96566 0.92321 1.20735 0.98474 0.96192 1.01170 1.20889 0.99895 1.01218 1.00187 0.89651 0.93238 0.94012 0.88396 0.88189 0.86274 0.90667 0.92948 0.90748 0.88268 0.88383 0.85594 0.90511 0.91834 0.92637 0.90150 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.89 101.05 1.10 1.40 16 2 O -0.39 -4.96 10.17 -59.04 -0.60 -5.57 16 3 C 0.21 2.46 6.39 101.05 0.65 3.11 16 4 O -0.34 -5.06 10.19 -42.95 -0.44 -5.50 16 5 C 0.11 1.92 6.64 -39.05 -0.26 1.66 16 6 C -0.16 -2.87 9.62 -39.49 -0.38 -3.25 16 7 C -0.03 -0.64 5.91 -104.24 -0.62 -1.26 16 8 C -0.11 -1.96 9.62 36.00 0.35 -1.61 16 9 C -0.01 -0.27 4.05 -104.88 -0.42 -0.69 16 10 C -0.15 -3.36 2.48 -104.25 -0.26 -3.62 16 11 C -0.10 -2.19 9.45 -39.22 -0.37 -2.56 16 12 C -0.05 -1.12 7.30 -39.17 -0.29 -1.41 16 13 F -0.18 -3.94 17.26 2.25 0.04 -3.90 16 14 C -0.13 -2.89 9.94 -39.89 -0.40 -3.29 16 15 C -0.14 -3.37 8.62 -39.30 -0.34 -3.71 16 16 C 0.12 2.99 5.31 -106.55 -0.57 2.42 16 17 C -0.44 -10.65 8.49 -37.95 -0.32 -10.97 16 18 H 0.08 1.99 7.27 -52.49 -0.38 1.61 16 19 C 0.08 1.80 5.16 -17.32 -0.09 1.71 16 20 N -0.79 -18.73 10.96 55.55 0.61 -18.12 16 21 Si 0.90 17.78 29.59 -169.99 -5.03 12.75 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 23 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 25 C -0.04 -0.79 5.91 -104.24 -0.62 -1.40 16 26 C -0.11 -1.90 9.62 36.01 0.35 -1.56 16 27 C -0.20 -3.53 8.41 -39.49 -0.33 -3.86 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.51 8.03 -51.93 -0.42 0.09 16 30 H 0.04 0.31 8.11 -51.93 -0.42 -0.11 16 31 H 0.10 0.82 8.01 -51.92 -0.42 0.40 16 32 H 0.10 1.08 6.69 -51.93 -0.35 0.74 16 33 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 34 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.05 0.81 8.09 -51.93 -0.42 0.39 16 36 H 0.07 1.48 6.84 -51.93 -0.36 1.13 16 37 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 38 H 0.10 2.06 8.06 -52.49 -0.42 1.63 16 39 H 0.13 3.10 6.20 -52.49 -0.33 2.78 16 40 H 0.28 6.22 8.30 -40.82 -0.34 5.88 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 43 H 0.08 1.56 6.86 -51.93 -0.36 1.21 16 44 H 0.12 1.89 5.83 -52.48 -0.31 1.58 16 LS Contribution 370.20 15.07 5.58 5.58 Total: -1.00 -26.79 370.20 -8.50 -35.28 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -5.84 Total: 8.37 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: -2.82 Total: -28.90 kcal Atomic # 7 Polarization: -18.73 SS G_CDS: 0.61 Total: -18.12 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -1.04 Total: -11.06 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.04 Total: -3.90 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -26.79 -8.50 -35.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244769228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.091 kcal (2) G-P(sol) polarization free energy of solvation -26.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds