Wall clock time and date at job start Tue Mar 31 2020 15:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99647 * 2 1 4 4 O 1.42898 * 109.47171 * 75.00496 * 3 2 1 5 5 C 1.35809 * 117.00517 * 75.00000 * 4 3 2 6 6 C 1.38956 * 119.91200 * 179.97438 * 5 4 3 7 7 C 1.37771 * 120.09317 * 179.97438 * 6 5 4 8 8 C 1.50697 * 120.04856 * 179.97438 * 7 6 5 9 9 C 1.39730 * 119.90299 * 359.97438 * 7 6 5 10 10 C 1.47792 * 120.08789 * 179.97438 * 9 7 6 11 11 C 1.39122 * 120.32509 * 89.99962 * 10 9 7 12 12 C 1.38333 * 119.95800 * 179.69809 * 11 10 9 13 13 F 1.35099 * 119.69360 * 180.30402 * 12 11 10 14 14 C 1.39244 * 120.61831 * 0.28219 * 12 11 10 15 15 C 1.36332 * 120.66186 * 359.97438 * 14 12 11 16 16 C 1.40798 * 120.02036 * 0.02562 * 15 14 12 17 17 C 1.40797 * 120.30338 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99900 * 154.04985 * 17 16 15 19 19 C 1.40017 * 120.00187 * 334.05739 * 17 16 15 20 20 N 1.30822 * 119.99938 * 343.62267 * 19 17 16 21 21 Si 1.86802 * 120.00026 * 163.62139 * 19 17 16 22 22 H 1.48501 * 109.47094 * 59.99989 * 21 19 17 23 23 H 1.48501 * 109.47131 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47256 * 299.99877 * 21 19 17 25 25 C 1.39718 * 119.82037 * 0.25326 * 9 7 6 26 26 C 1.50703 * 120.04600 * 179.74527 * 25 9 7 27 27 C 1.37768 * 119.90556 * 359.50929 * 25 9 7 28 28 H 1.09003 * 109.46840 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46826 * 299.99719 * 1 2 3 30 30 H 1.08992 * 109.47319 * 59.99933 * 1 2 3 31 31 H 1.09008 * 109.47227 * 315.00233 * 3 2 1 32 32 H 1.09000 * 109.46960 * 195.00261 * 3 2 1 33 33 H 1.07997 * 119.95655 * 359.97438 * 6 5 4 34 34 H 1.08997 * 109.47098 * 269.98486 * 8 7 6 35 35 H 1.09003 * 109.46602 * 29.98561 * 8 7 6 36 36 H 1.09003 * 109.47310 * 149.97956 * 8 7 6 37 37 H 1.08006 * 120.02099 * 359.97438 * 11 10 9 38 38 H 1.07994 * 119.67268 * 180.02562 * 14 12 11 39 39 H 1.07998 * 119.98932 * 180.02562 * 15 14 12 40 40 H 0.96994 * 119.99763 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.47359 * 90.00125 * 26 25 9 42 42 H 1.09003 * 109.47205 * 210.00119 * 26 25 9 43 43 H 1.09003 * 109.47119 * 329.99559 * 26 25 9 44 44 H 1.08008 * 119.94891 * 180.20686 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8854 1.8824 1.3014 5 6 2.7183 1.4135 2.2662 6 6 2.6491 1.9324 3.5534 7 6 3.4918 1.4590 4.5352 8 6 3.4164 2.0229 5.9307 9 6 4.4166 0.4554 4.2351 10 6 5.3229 -0.0549 5.2850 11 6 4.9426 -1.1328 6.0782 12 6 5.7995 -1.6083 7.0546 13 9 5.4273 -2.6592 7.8176 14 6 7.0423 -1.0142 7.2580 15 6 7.4384 0.0466 6.4988 16 6 6.5879 0.5528 5.4974 17 6 6.9912 1.6478 4.7095 18 1 6.5836 1.7789 3.7180 19 6 7.9209 2.5667 5.2113 20 7 8.1742 2.6066 6.4941 21 14 8.7997 3.7356 4.0489 22 1 7.8002 4.5822 3.3492 23 1 9.7262 4.6000 4.8232 24 1 9.5717 2.9532 3.0502 25 6 4.4861 -0.0602 2.9384 26 6 5.4854 -1.1386 2.6078 27 6 3.6364 0.4153 1.9637 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.4940 1.9330 -0.7267 32 1 3.0648 1.2337 -0.2660 33 1 1.9338 2.7078 3.7846 34 1 4.0926 2.8734 6.0159 35 1 2.3964 2.3475 6.1367 36 1 3.7054 1.2554 6.6488 37 1 3.9808 -1.6009 5.9288 38 1 7.6994 -1.3981 8.0242 39 1 8.4049 0.4989 6.6656 40 1 8.8185 3.2429 6.8416 41 1 5.0341 -2.1163 2.7763 42 1 5.7823 -1.0508 1.5626 43 1 6.3629 -1.0287 3.2451 44 1 3.6872 0.0148 0.9619 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244769228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:29 Heat of formation + Delta-G solvation = -114.939878 kcal Electronic energy + Delta-G solvation = -28459.660487 eV Core-core repulsion = 24448.351493 eV Total energy + Delta-G solvation = -4011.308995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.28649 -41.33734 -39.98863 -38.59547 -37.37193 -35.47097 -34.38004 -32.96493 -31.27050 -30.44113 -28.80524 -28.04617 -27.48554 -26.77587 -25.94727 -23.52608 -22.83962 -21.58641 -21.33562 -19.23438 -18.71598 -18.14033 -17.81767 -17.70761 -17.20451 -16.45139 -16.31982 -16.09782 -16.01600 -15.74068 -15.48393 -15.05555 -14.58286 -14.47483 -14.24716 -14.18163 -13.96337 -13.86840 -13.82584 -13.68023 -13.41993 -13.11368 -12.80289 -12.77210 -12.65591 -12.51020 -12.45675 -12.20590 -12.09058 -11.83926 -11.64190 -11.54165 -11.24950 -11.08422 -11.00925 -9.46579 -9.42805 -9.19038 -8.81422 -8.65783 -6.29569 0.52220 0.58302 0.79724 0.94159 1.39736 1.47886 1.50760 2.19853 2.31471 2.64898 2.74191 2.94590 3.59192 3.90871 3.94654 3.98682 4.11624 4.16624 4.26451 4.31436 4.37131 4.43848 4.49463 4.56232 4.62946 4.64291 4.77868 4.84631 4.85513 4.88838 4.92084 5.05070 5.07270 5.15073 5.19767 5.31158 5.38508 5.47998 5.50725 5.66906 5.79498 5.86062 5.95015 5.97204 6.02729 6.08742 6.29737 6.53881 6.62994 6.89880 6.97559 8.28587 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.010519 B = 0.004643 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.111857 B = 6029.087500 C = 7580.910558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.203 3.797 4 O -0.340 6.340 5 C 0.119 3.881 6 C -0.167 4.167 7 C -0.046 4.046 8 C -0.099 4.099 9 C -0.045 4.045 10 C -0.134 4.134 11 C -0.104 4.104 12 C -0.059 4.059 13 F -0.173 7.173 14 C -0.130 4.130 15 C -0.158 4.158 16 C 0.105 3.895 17 C -0.457 4.457 18 H 0.075 0.925 19 C 0.044 3.956 20 N -0.812 5.812 21 Si 0.967 3.033 22 H -0.264 1.264 23 H -0.267 1.267 24 H -0.259 1.259 25 C -0.051 4.051 26 C -0.105 4.105 27 C -0.201 4.201 28 H 0.094 0.906 29 H 0.038 0.962 30 H 0.067 0.933 31 H 0.135 0.865 32 H 0.107 0.893 33 H 0.137 0.863 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.291 0.709 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.053 0.947 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.105 0.733 -11.601 14.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.091 3.909 4 O -0.256 6.256 5 C 0.074 3.926 6 C -0.185 4.185 7 C -0.046 4.046 8 C -0.156 4.156 9 C -0.045 4.045 10 C -0.136 4.136 11 C -0.123 4.123 12 C -0.079 4.079 13 F -0.152 7.152 14 C -0.149 4.149 15 C -0.178 4.178 16 C 0.102 3.898 17 C -0.486 4.486 18 H 0.093 0.907 19 C -0.173 4.173 20 N -0.437 5.437 21 Si 0.789 3.211 22 H -0.189 1.189 23 H -0.192 1.192 24 H -0.184 1.184 25 C -0.051 4.051 26 C -0.162 4.162 27 C -0.220 4.220 28 H 0.113 0.887 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.152 0.848 32 H 0.125 0.875 33 H 0.155 0.845 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.072 0.928 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.022 0.807 -11.379 14.544 hybrid contribution 0.462 0.329 0.129 0.582 sum -8.560 1.136 -11.250 14.182 Atomic orbital electron populations 1.22958 0.79256 1.03809 1.01056 1.88040 1.22318 1.29405 1.93639 1.24551 1.00823 0.83485 0.82043 1.86149 1.57523 1.60991 1.20950 1.18896 0.90654 0.94153 0.88848 1.20240 1.03552 1.04302 0.90441 1.19916 0.94047 0.94587 0.96074 1.20621 1.02053 1.00517 0.92380 1.18423 0.96069 0.97226 0.92827 1.18301 0.94369 1.00239 1.00658 1.20649 0.98241 0.97526 0.95914 1.17282 0.97800 0.93092 0.99700 1.91278 1.92220 1.56239 1.75502 1.20596 0.95164 0.98004 1.01140 1.20890 1.00549 0.96613 0.99718 1.17776 0.89289 0.91548 0.91157 1.19532 1.20720 1.06678 1.01653 0.90737 1.26623 0.95381 0.98916 0.96375 1.69823 1.27414 1.32162 1.14265 0.85455 0.78624 0.77987 0.79070 1.18860 1.19172 1.18364 1.20009 0.96097 0.96948 0.92079 1.20705 0.97142 0.96270 1.02038 1.21062 0.99265 1.00997 1.00646 0.88719 0.94276 0.91481 0.84763 0.87505 0.84487 0.92150 0.89966 0.92861 0.87184 0.86860 0.86651 0.89834 0.90959 0.90244 0.92780 0.83933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.89 113.37 1.23 1.64 16 2 O -0.41 -9.21 10.17 -126.21 -1.28 -10.50 16 3 C 0.20 4.02 6.39 113.37 0.72 4.75 16 4 O -0.34 -9.27 10.19 -68.64 -0.70 -9.97 16 5 C 0.12 3.87 6.64 22.61 0.15 4.02 16 6 C -0.17 -5.76 9.62 22.33 0.21 -5.54 16 7 C -0.05 -1.79 5.91 -19.62 -0.12 -1.91 16 8 C -0.10 -3.69 9.62 71.23 0.69 -3.01 16 9 C -0.05 -1.88 4.05 -20.03 -0.08 -1.97 16 10 C -0.13 -6.13 2.48 -19.62 -0.05 -6.18 16 11 C -0.10 -4.72 9.45 22.50 0.21 -4.51 16 12 C -0.06 -2.75 7.30 22.53 0.16 -2.59 16 13 F -0.17 -7.78 17.26 44.97 0.78 -7.00 16 14 C -0.13 -6.10 9.94 22.07 0.22 -5.88 16 15 C -0.16 -7.90 8.62 22.45 0.19 -7.70 16 16 C 0.11 5.22 5.31 -21.11 -0.11 5.11 16 17 C -0.46 -22.67 8.49 23.33 0.20 -22.47 16 18 H 0.07 3.71 7.27 -2.91 -0.02 3.69 16 19 C 0.04 2.06 5.16 85.27 0.44 2.50 16 20 N -0.81 -39.41 10.96 21.84 0.24 -39.17 16 21 Si 0.97 36.32 29.59 68.60 2.03 38.35 16 22 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 23 H -0.27 -9.52 7.11 99.48 0.71 -8.82 16 24 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 25 C -0.05 -1.92 5.91 -19.62 -0.12 -2.03 16 26 C -0.11 -3.60 9.62 71.24 0.69 -2.92 16 27 C -0.20 -6.62 8.41 22.33 0.19 -6.43 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.04 0.72 8.03 -2.39 -0.02 0.70 16 30 H 0.07 0.75 8.11 -2.39 -0.02 0.74 16 31 H 0.14 1.67 8.01 -2.38 -0.02 1.66 16 32 H 0.11 1.96 6.69 -2.39 -0.02 1.94 16 33 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 34 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.08 2.48 8.09 -2.39 -0.02 2.46 16 36 H 0.05 2.17 6.84 -2.39 -0.02 2.15 16 37 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 38 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 39 H 0.12 5.92 6.20 -2.91 -0.02 5.90 16 40 H 0.29 12.86 8.30 -92.71 -0.77 12.09 16 41 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.08 2.28 8.09 -2.39 -0.02 2.26 16 43 H 0.05 2.13 6.86 -2.39 -0.02 2.11 16 44 H 0.14 4.02 5.83 -2.91 -0.02 4.00 16 Total: -1.00 -57.92 370.20 6.92 -51.00 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 1.02 Total: 32.39 kcal Atomic # 6 Polarization: -59.95 SS G_CDS: 4.84 Total: -55.11 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.24 Total: -39.17 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -1.98 Total: -20.47 kcal Atomic # 9 Polarization: -7.78 SS G_CDS: 0.78 Total: -7.00 kcal Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.35 kcal Total: -57.92 6.92 -51.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244769228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.936 kcal (2) G-P(sol) polarization free energy of solvation -57.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds