Wall clock time and date at job start Tue Mar 31 2020 16:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99638 * 2 1 4 4 N 1.46496 * 109.47286 * 125.00253 * 3 2 1 5 5 C 1.46500 * 119.99861 * 269.99933 * 4 3 2 6 6 C 1.50706 * 109.46592 * 269.99511 * 5 4 3 7 7 H 1.07991 * 120.00355 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99792 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00305 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00079 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47250 * 89.99670 * 10 8 6 12 12 H 1.48500 * 109.47384 * 209.99846 * 10 8 6 13 13 H 1.48506 * 109.47158 * 330.00228 * 10 8 6 14 14 C 1.34784 * 120.00297 * 89.99326 * 4 3 2 15 15 O 1.21285 * 119.99687 * 180.02562 * 14 4 3 16 16 C 1.50699 * 120.00061 * 0.02562 * 14 4 3 17 17 H 1.09004 * 115.55683 * 34.30657 * 16 14 4 18 18 C 1.53070 * 117.49171 * 248.60351 * 16 14 4 19 19 C 1.52992 * 117.49886 * 179.97438 * 16 14 4 20 20 H 1.08999 * 117.50090 * 359.97438 * 19 16 14 21 21 C 1.50702 * 117.50005 * 214.97991 * 19 16 14 22 22 C 1.38225 * 119.99849 * 120.08999 * 21 19 16 23 23 C 1.38238 * 120.00063 * 180.02562 * 22 21 19 24 24 C 1.38241 * 119.99747 * 359.95209 * 23 22 21 25 25 N 1.48020 * 120.00001 * 180.02562 * 24 23 22 26 26 O 1.21803 * 119.99894 * 359.97438 * 25 24 23 27 27 O 1.21799 * 119.99903 * 179.72763 * 25 24 23 28 28 C 1.38239 * 119.99659 * 0.27757 * 24 23 22 29 29 C 1.38231 * 120.00044 * 359.53580 * 28 24 23 30 30 H 1.08003 * 119.99874 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.99950 * 180.02562 * 1 2 3 32 32 H 1.07993 * 120.00377 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47806 * 4.99630 * 3 2 1 34 34 H 1.09011 * 109.46853 * 244.99587 * 3 2 1 35 35 H 1.08998 * 109.46945 * 29.99446 * 5 4 3 36 36 H 1.08993 * 109.47769 * 149.99955 * 5 4 3 37 37 H 0.96996 * 120.00579 * 179.97438 * 9 8 6 38 38 H 1.09004 * 117.51212 * 145.04123 * 18 16 14 39 39 H 1.08999 * 117.50012 * 359.97438 * 18 16 14 40 40 H 1.08004 * 120.00379 * 0.02562 * 22 21 19 41 41 H 1.08002 * 120.00526 * 179.97438 * 23 22 21 42 42 H 1.07999 * 119.99627 * 179.73007 * 28 24 23 43 43 H 1.08002 * 119.99577 * 180.21385 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8651 2.4248 6 6 2.8442 3.3438 2.4802 7 1 3.3032 3.8372 1.6364 8 6 2.5184 4.0670 3.6080 9 7 1.9590 3.4663 4.6356 10 14 2.8715 5.9000 3.6765 11 1 1.6986 6.6498 3.1594 12 1 3.1351 6.3012 5.0818 13 1 4.0616 6.2064 2.8427 14 6 4.2497 0.8663 0.9823 15 8 5.0197 0.8881 1.9192 16 6 4.6973 0.3184 -0.3483 17 1 4.2717 0.8066 -1.2250 18 6 4.9685 -1.1854 -0.4381 19 6 6.1348 -0.1946 -0.4536 20 1 6.7570 -0.1353 0.4394 21 6 6.8538 0.0135 -1.7616 22 6 8.0211 0.7528 -1.7986 23 6 8.6804 0.9441 -2.9985 24 6 8.1727 0.3951 -4.1612 25 7 8.8789 0.5994 -5.4460 26 8 9.9070 1.2516 -5.4787 27 8 8.4343 0.1115 -6.4696 28 6 7.0027 -0.3404 -4.1248 29 6 6.3457 -0.5348 -2.9243 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9352 0.0004 33 1 1.3586 2.1317 0.0895 34 1 2.6213 1.4026 -0.9315 35 1 1.4887 1.6967 2.5458 36 1 3.0988 1.3606 3.2259 37 1 1.7301 3.9749 5.4291 38 1 4.7216 -1.6866 -1.3741 39 1 4.8235 -1.7779 0.4653 40 1 8.4182 1.1811 -0.8901 41 1 9.5922 1.5221 -3.0276 42 1 6.6038 -0.7656 -5.0339 43 1 5.4334 -1.1123 -2.8955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412364733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:44 Heat of formation + Delta-G solvation = 36.900537 kcal Electronic energy + Delta-G solvation = -27005.591428 eV Core-core repulsion = 23020.786690 eV Total energy + Delta-G solvation = -3984.804739 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.39056 -40.47492 -39.23906 -36.77887 -36.72152 -35.66314 -33.27163 -32.18383 -31.99493 -31.68328 -28.07931 -27.01667 -25.66332 -24.45454 -23.91850 -23.11282 -22.04291 -20.96268 -20.02090 -19.63211 -18.87893 -18.40698 -17.73729 -17.37190 -16.55842 -16.17083 -15.74612 -15.48023 -15.39103 -14.77443 -14.49372 -14.32425 -14.21988 -13.66351 -13.50496 -13.26513 -12.93987 -12.27629 -12.19418 -12.15355 -11.85017 -11.80000 -11.66415 -11.44181 -11.39551 -11.35762 -11.18245 -11.11964 -10.94920 -10.67426 -10.62429 -10.25851 -9.76863 -9.73105 -9.48605 -9.26334 -9.07442 -8.50889 -7.82524 -6.11978 -4.17249 -0.44790 0.59971 1.05457 1.17451 2.35923 2.74250 3.06551 3.24617 3.31824 3.35615 3.65914 3.81559 4.03611 4.13467 4.16498 4.38445 4.45495 4.55304 4.64453 4.72010 4.84933 4.97196 5.03919 5.17038 5.22439 5.24423 5.32756 5.34571 5.46045 5.51530 5.56463 5.72545 5.78789 5.91453 5.93901 6.03675 6.10912 6.20910 6.70903 6.81823 6.97450 7.33536 7.41477 7.42412 7.83750 8.13886 8.26112 8.78730 8.94230 9.48156 10.96129 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013003 B = 0.002709 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.855376 B =10332.862541 C =11441.812643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.167 4.167 3 C 0.136 3.864 4 N -0.586 5.586 5 C 0.247 3.753 6 C -0.529 4.529 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.533 3.467 15 O -0.538 6.538 16 C -0.161 4.161 17 H 0.124 0.876 18 C -0.142 4.142 19 C -0.109 4.109 20 H 0.137 0.863 21 C 0.013 3.987 22 C -0.109 4.109 23 C -0.050 4.050 24 C -0.056 4.056 25 N 0.031 4.969 26 O -0.164 6.164 27 O -0.165 6.165 28 C -0.050 4.050 29 C -0.123 4.123 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.044 0.956 37 H 0.264 0.736 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.223 -10.524 -15.840 19.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.186 4.186 3 C 0.012 3.988 4 N -0.315 5.315 5 C 0.129 3.871 6 C -0.568 4.568 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.210 1.210 13 H -0.199 1.199 14 C 0.319 3.681 15 O -0.416 6.416 16 C -0.183 4.183 17 H 0.142 0.858 18 C -0.179 4.179 19 C -0.127 4.127 20 H 0.155 0.845 21 C 0.012 3.988 22 C -0.127 4.127 23 C -0.069 4.069 24 C -0.139 4.139 25 N 0.549 4.451 26 O -0.380 6.380 27 O -0.381 6.381 28 C -0.069 4.069 29 C -0.141 4.141 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.169 0.831 41 H 0.172 0.828 42 H 0.171 0.829 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.205 -10.536 -14.508 18.670 hybrid contribution 0.194 1.161 -0.279 1.210 sum 5.399 -9.374 -14.787 18.322 Atomic orbital electron populations 1.23835 0.95883 1.01802 1.00495 1.23399 0.96315 0.98955 0.99957 1.20614 0.93055 0.95486 0.89641 1.48147 1.10145 1.59537 1.13715 1.19313 0.95493 0.93828 0.78504 1.21410 1.40795 0.93230 1.01327 0.92458 1.24930 0.94978 0.98807 0.95296 1.69926 1.41878 1.36230 1.05195 0.86502 0.78643 0.84899 0.77421 1.20593 1.21026 1.19881 1.19252 0.82527 0.78582 0.87752 1.90683 1.52729 1.56668 1.41471 1.22562 0.97611 0.98512 0.99572 0.85825 1.23154 0.99755 0.90635 1.04330 1.21214 0.90613 1.04881 0.96012 0.84546 1.19699 0.93121 0.91945 0.94018 1.21140 0.94974 0.98731 0.97886 1.21076 1.00027 0.95799 0.89960 1.21128 0.98508 1.10261 0.83981 1.43645 1.00292 0.98299 1.02818 1.94541 1.12348 1.37985 1.93098 1.94530 1.69831 1.50559 1.23131 1.21017 0.91463 0.94168 1.00226 1.21154 1.01266 1.01221 0.90485 0.88301 0.88747 0.87679 0.89445 0.90818 0.94829 0.93840 0.92639 0.87543 0.87235 0.83066 0.82840 0.82934 0.83319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 14.32 29.01 0.42 -1.74 16 2 C -0.17 -2.13 9.85 -36.02 -0.35 -2.49 16 3 C 0.14 2.02 5.67 -5.19 -0.03 1.99 16 4 N -0.59 -11.48 2.44 -176.43 -0.43 -11.91 16 5 C 0.25 6.20 5.16 -5.19 -0.03 6.17 16 6 C -0.53 -14.50 9.39 -34.44 -0.32 -14.82 16 7 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 10 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 C 0.53 10.01 7.46 -10.98 -0.08 9.92 16 15 O -0.54 -12.47 15.84 5.55 0.09 -12.38 16 16 C -0.16 -2.01 4.92 -91.74 -0.45 -2.46 16 17 H 0.12 1.32 6.44 -51.93 -0.33 0.99 16 18 C -0.14 -1.32 9.57 -26.67 -0.26 -1.57 16 19 C -0.11 -1.16 5.55 -91.75 -0.51 -1.67 16 20 H 0.14 1.67 7.67 -51.93 -0.40 1.27 16 21 C 0.01 0.11 5.61 -104.63 -0.59 -0.47 16 22 C -0.11 -0.95 9.74 -39.59 -0.39 -1.34 16 23 C -0.05 -0.45 9.56 -39.58 -0.38 -0.82 16 24 C -0.06 -0.56 6.85 -79.94 -0.55 -1.11 16 25 N 0.03 0.38 4.45 33.96 0.15 0.53 16 26 O -0.16 -2.14 18.45 -29.46 -0.54 -2.68 16 27 O -0.17 -2.10 18.45 -29.46 -0.54 -2.65 16 28 C -0.05 -0.41 9.56 -39.58 -0.38 -0.79 16 29 C -0.12 -0.92 9.30 -39.59 -0.37 -1.29 16 30 H 0.10 1.17 7.84 -52.48 -0.41 0.76 16 31 H 0.09 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.09 1.38 7.72 -51.93 -0.40 0.98 16 34 H 0.07 0.89 6.00 -51.92 -0.31 0.58 16 35 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 36 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 38 H 0.11 0.66 6.18 -51.93 -0.32 0.34 16 39 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.15 1.16 8.06 -52.48 -0.42 0.74 16 41 H 0.15 1.19 7.61 -52.49 -0.40 0.79 16 42 H 0.15 1.02 7.61 -52.49 -0.40 0.62 16 43 H 0.15 0.77 6.03 -52.49 -0.32 0.46 16 LS Contribution 378.75 15.07 5.71 5.71 Total: -1.00 -33.18 378.75 -9.55 -42.72 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.33 Total: 0.39 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -4.36 Total: -10.86 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.46 Total: -36.60 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -1.00 Total: -17.71 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.18 -9.55 -42.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412364733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.625 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds