Wall clock time and date at job start Tue Mar 31 2020 16:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99638 * 2 1 4 4 N 1.46496 * 109.47286 * 125.00253 * 3 2 1 5 5 C 1.46500 * 119.99861 * 269.99933 * 4 3 2 6 6 C 1.50706 * 109.46592 * 269.99511 * 5 4 3 7 7 H 1.07991 * 120.00355 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99792 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00305 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00079 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47250 * 89.99670 * 10 8 6 12 12 H 1.48500 * 109.47384 * 209.99846 * 10 8 6 13 13 H 1.48506 * 109.47158 * 330.00228 * 10 8 6 14 14 C 1.34784 * 120.00297 * 89.99326 * 4 3 2 15 15 O 1.21285 * 119.99687 * 180.02562 * 14 4 3 16 16 C 1.50699 * 120.00061 * 0.02562 * 14 4 3 17 17 H 1.09004 * 115.55683 * 34.30657 * 16 14 4 18 18 C 1.53070 * 117.49171 * 248.60351 * 16 14 4 19 19 C 1.52992 * 117.49886 * 179.97438 * 16 14 4 20 20 H 1.08999 * 117.50090 * 359.97438 * 19 16 14 21 21 C 1.50702 * 117.50005 * 214.97991 * 19 16 14 22 22 C 1.38225 * 119.99849 * 120.08999 * 21 19 16 23 23 C 1.38238 * 120.00063 * 180.02562 * 22 21 19 24 24 C 1.38241 * 119.99747 * 359.95209 * 23 22 21 25 25 N 1.48020 * 120.00001 * 180.02562 * 24 23 22 26 26 O 1.21803 * 119.99894 * 359.97438 * 25 24 23 27 27 O 1.21799 * 119.99903 * 179.72763 * 25 24 23 28 28 C 1.38239 * 119.99659 * 0.27757 * 24 23 22 29 29 C 1.38231 * 120.00044 * 359.53580 * 28 24 23 30 30 H 1.08003 * 119.99874 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.99950 * 180.02562 * 1 2 3 32 32 H 1.07993 * 120.00377 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47806 * 4.99630 * 3 2 1 34 34 H 1.09011 * 109.46853 * 244.99587 * 3 2 1 35 35 H 1.08998 * 109.46945 * 29.99446 * 5 4 3 36 36 H 1.08993 * 109.47769 * 149.99955 * 5 4 3 37 37 H 0.96996 * 120.00579 * 179.97438 * 9 8 6 38 38 H 1.09004 * 117.51212 * 145.04123 * 18 16 14 39 39 H 1.08999 * 117.50012 * 359.97438 * 18 16 14 40 40 H 1.08004 * 120.00379 * 0.02562 * 22 21 19 41 41 H 1.08002 * 120.00526 * 179.97438 * 23 22 21 42 42 H 1.07999 * 119.99627 * 179.73007 * 28 24 23 43 43 H 1.08002 * 119.99577 * 180.21385 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8651 2.4248 6 6 2.8442 3.3438 2.4802 7 1 3.3032 3.8372 1.6364 8 6 2.5184 4.0670 3.6080 9 7 1.9590 3.4663 4.6356 10 14 2.8715 5.9000 3.6765 11 1 1.6986 6.6498 3.1594 12 1 3.1351 6.3012 5.0818 13 1 4.0616 6.2064 2.8427 14 6 4.2497 0.8663 0.9823 15 8 5.0197 0.8881 1.9192 16 6 4.6973 0.3184 -0.3483 17 1 4.2717 0.8066 -1.2250 18 6 4.9685 -1.1854 -0.4381 19 6 6.1348 -0.1946 -0.4536 20 1 6.7570 -0.1353 0.4394 21 6 6.8538 0.0135 -1.7616 22 6 8.0211 0.7528 -1.7986 23 6 8.6804 0.9441 -2.9985 24 6 8.1727 0.3951 -4.1612 25 7 8.8789 0.5994 -5.4460 26 8 9.9070 1.2516 -5.4787 27 8 8.4343 0.1115 -6.4696 28 6 7.0027 -0.3404 -4.1248 29 6 6.3457 -0.5348 -2.9243 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9352 0.0004 33 1 1.3586 2.1317 0.0895 34 1 2.6213 1.4026 -0.9315 35 1 1.4887 1.6967 2.5458 36 1 3.0988 1.3606 3.2259 37 1 1.7301 3.9749 5.4291 38 1 4.7216 -1.6866 -1.3741 39 1 4.8235 -1.7779 0.4653 40 1 8.4182 1.1811 -0.8901 41 1 9.5922 1.5221 -3.0276 42 1 6.6038 -0.7656 -5.0339 43 1 5.4334 -1.1123 -2.8955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412364733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:43 Heat of formation + Delta-G solvation = 19.567598 kcal Electronic energy + Delta-G solvation = -27006.343041 eV Core-core repulsion = 23020.786690 eV Total energy + Delta-G solvation = -3985.556351 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.25768 -41.44428 -40.37060 -37.78462 -37.68877 -37.03387 -35.10201 -33.65649 -32.77849 -32.36012 -29.88539 -27.93111 -26.92433 -26.03726 -24.62965 -23.94338 -23.46559 -21.82012 -21.06674 -20.39793 -19.80119 -19.64755 -18.73916 -18.61398 -18.37668 -17.41921 -16.86224 -16.51817 -16.22976 -16.11669 -15.91790 -15.52168 -14.91377 -14.70454 -14.48854 -14.34778 -14.17293 -14.01313 -13.37556 -13.35076 -12.99910 -12.91034 -12.85637 -12.72832 -12.61515 -12.41611 -12.31791 -12.28622 -12.26977 -12.21159 -11.91812 -11.69984 -11.53039 -10.68083 -10.66609 -10.38462 -10.28533 -10.15270 -9.48453 -8.24846 -6.39622 -1.27815 -0.01932 0.23121 0.37555 1.34255 1.35951 1.37281 1.47273 1.63356 2.16943 2.31177 2.45932 2.89499 3.05048 3.26543 3.39152 3.51155 3.60554 3.70304 3.80324 3.96492 4.05046 4.12670 4.14763 4.29109 4.31005 4.48986 4.59221 4.70238 4.77033 4.82507 4.87522 4.93608 5.01745 5.06406 5.09325 5.15731 5.21586 5.29600 5.47332 5.50084 5.73920 5.76291 5.97980 6.03743 6.46660 6.67278 6.76522 7.25906 7.44937 8.82205 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013003 B = 0.002709 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.855376 B =10332.862541 C =11441.812643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.177 4.177 3 C 0.132 3.868 4 N -0.593 5.593 5 C 0.265 3.735 6 C -0.543 4.543 7 H 0.053 0.947 8 C 0.009 3.991 9 N -0.927 5.927 10 Si 0.965 3.035 11 H -0.264 1.264 12 H -0.281 1.281 13 H -0.273 1.273 14 C 0.523 3.477 15 O -0.597 6.597 16 C -0.171 4.171 17 H 0.151 0.849 18 C -0.112 4.112 19 C -0.106 4.106 20 H 0.112 0.888 21 C 0.012 3.988 22 C -0.114 4.114 23 C -0.052 4.052 24 C -0.070 4.070 25 N 0.032 4.968 26 O -0.195 6.195 27 O -0.171 6.171 28 C -0.044 4.044 29 C -0.108 4.108 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.021 0.979 36 H -0.003 1.003 37 H 0.267 0.733 38 H 0.154 0.846 39 H 0.099 0.901 40 H 0.155 0.845 41 H 0.159 0.841 42 H 0.172 0.828 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.321 -11.423 -18.200 21.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.196 4.196 3 C 0.011 3.989 4 N -0.322 5.322 5 C 0.143 3.857 6 C -0.582 4.582 7 H 0.071 0.929 8 C -0.190 4.190 9 N -0.567 5.567 10 Si 0.789 3.211 11 H -0.189 1.189 12 H -0.207 1.207 13 H -0.198 1.198 14 C 0.312 3.688 15 O -0.479 6.479 16 C -0.191 4.191 17 H 0.169 0.831 18 C -0.149 4.149 19 C -0.125 4.125 20 H 0.131 0.869 21 C 0.011 3.989 22 C -0.133 4.133 23 C -0.072 4.072 24 C -0.153 4.153 25 N 0.546 4.454 26 O -0.405 6.405 27 O -0.387 6.387 28 C -0.063 4.063 29 C -0.125 4.125 30 H 0.112 0.888 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.090 0.910 34 H 0.126 0.874 35 H 0.039 0.961 36 H 0.015 0.985 37 H 0.076 0.924 38 H 0.172 0.828 39 H 0.118 0.882 40 H 0.172 0.828 41 H 0.176 0.824 42 H 0.190 0.810 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 4.316 -11.425 -16.920 20.867 hybrid contribution 0.418 1.379 0.514 1.530 sum 4.734 -10.046 -16.405 19.811 Atomic orbital electron populations 1.24045 0.95769 1.02694 0.98800 1.23328 0.96542 0.98343 1.01384 1.20856 0.92586 0.96408 0.89095 1.48121 1.11670 1.59372 1.13034 1.18685 0.93843 0.92622 0.80520 1.21701 1.40616 0.94497 1.01352 0.92888 1.25829 0.94665 1.03612 0.94890 1.70044 1.42787 1.38084 1.05798 0.85454 0.78863 0.79274 0.77465 1.18870 1.20669 1.19761 1.20329 0.81390 0.77379 0.89654 1.90647 1.54132 1.58876 1.44196 1.22390 0.99408 1.01199 0.96145 0.83114 1.23379 0.96875 0.88450 1.06180 1.21092 0.89939 1.05320 0.96141 0.86948 1.19631 0.93058 0.92435 0.93762 1.21240 0.95267 0.98867 0.97912 1.21150 1.00342 0.95879 0.89779 1.21360 0.99385 1.11608 0.82945 1.43960 1.00162 0.97815 1.03461 1.94537 1.13346 1.39119 1.93450 1.94502 1.69699 1.50434 1.24052 1.21304 0.90453 0.93218 1.01359 1.21427 1.01793 1.00271 0.89057 0.88816 0.86522 0.86016 0.91040 0.87352 0.96141 0.98491 0.92391 0.82847 0.88215 0.82779 0.82377 0.81030 0.79926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.76 14.32 67.78 0.97 -2.79 16 2 C -0.18 -4.11 9.85 25.65 0.25 -3.86 16 3 C 0.13 3.76 5.67 85.63 0.49 4.25 16 4 N -0.59 -23.57 2.44 -830.48 -2.03 -25.59 16 5 C 0.26 13.90 5.16 85.63 0.44 14.34 16 6 C -0.54 -30.70 9.39 25.60 0.24 -30.46 16 7 H 0.05 2.96 7.81 -2.92 -0.02 2.94 16 8 C 0.01 0.52 5.46 84.66 0.46 0.98 16 9 N -0.93 -55.41 13.29 21.45 0.28 -55.12 16 10 Si 0.97 44.27 29.54 68.60 2.03 46.29 16 11 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 13 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 14 C 0.52 19.81 7.46 87.66 0.65 20.47 16 15 O -0.60 -29.03 15.84 -3.04 -0.05 -29.08 16 16 C -0.17 -3.83 4.92 -11.52 -0.06 -3.89 16 17 H 0.15 2.56 6.44 -2.39 -0.02 2.54 16 18 C -0.11 -1.66 9.57 30.63 0.29 -1.36 16 19 C -0.11 -2.04 5.55 -11.53 -0.06 -2.10 16 20 H 0.11 2.76 7.67 -2.39 -0.02 2.74 16 21 C 0.01 0.17 5.61 -19.87 -0.11 0.06 16 22 C -0.11 -1.83 9.74 22.27 0.22 -1.61 16 23 C -0.05 -0.88 9.56 22.27 0.21 -0.66 16 24 C -0.07 -1.27 6.85 36.38 0.25 -1.02 16 25 N 0.03 0.75 4.45 -46.46 -0.21 0.54 16 26 O -0.20 -5.07 18.45 18.88 0.35 -4.72 16 27 O -0.17 -4.11 18.45 18.89 0.35 -3.76 16 28 C -0.04 -0.57 9.56 22.27 0.21 -0.35 16 29 C -0.11 -1.10 9.30 22.27 0.21 -0.89 16 30 H 0.09 2.09 7.84 -2.91 -0.02 2.07 16 31 H 0.12 1.99 8.06 -2.91 -0.02 1.96 16 32 H 0.12 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.07 2.23 7.72 -2.39 -0.02 2.22 16 34 H 0.11 2.27 6.00 -2.38 -0.01 2.26 16 35 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 36 H 0.00 -0.18 7.42 -2.39 -0.02 -0.20 16 37 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 38 H 0.15 0.85 6.18 -2.38 -0.01 0.84 16 39 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 41 H 0.16 2.40 7.61 -2.91 -0.02 2.37 16 42 H 0.17 1.56 7.61 -2.91 -0.02 1.53 16 43 H 0.18 0.61 6.03 -2.91 -0.02 0.59 16 Total: -1.00 -77.48 378.75 6.43 -71.05 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 1.03 Total: 9.30 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 4.67 Total: -8.90 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -1.95 Total: -80.17 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: 0.65 Total: -37.57 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -77.48 6.43 -71.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412364733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.616 kcal (2) G-P(sol) polarization free energy of solvation -77.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds