Wall clock time and date at job start Tue Mar 31 2020 16:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46501 * 119.99938 * 2 1 4 4 C 1.50695 * 109.46919 * 269.99801 * 3 2 1 5 5 H 1.08005 * 120.00309 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00117 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00037 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00217 * 179.97438 * 6 4 3 9 9 H 1.48493 * 109.47111 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46897 * 120.00263 * 8 6 4 11 11 H 1.48497 * 109.47120 * 239.99828 * 8 6 4 12 12 C 1.34779 * 119.99452 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99765 * 179.41711 * 12 2 1 14 14 C 1.50692 * 120.00488 * 359.41358 * 12 2 1 15 15 C 1.53002 * 109.47308 * 302.93029 * 14 12 2 16 16 C 1.53001 * 109.47578 * 182.92561 * 14 12 2 17 17 N 1.46501 * 109.46884 * 62.92530 * 14 12 2 18 18 C 1.34525 * 124.46267 * 15.73109 * 17 14 12 19 19 O 1.21444 * 125.70486 * 0.04684 * 18 17 14 20 20 C 1.47814 * 108.58280 * 180.02562 * 18 17 14 21 21 C 1.38563 * 134.29542 * 180.02562 * 20 18 17 22 22 C 1.38614 * 119.72225 * 180.20991 * 21 20 18 23 23 C 1.38236 * 120.45194 * 359.51224 * 22 21 20 24 24 C 1.38613 * 120.46138 * 0.47289 * 23 22 21 25 25 C 1.38567 * 119.72074 * 359.77376 * 24 23 22 26 26 C 1.34528 * 124.46317 * 195.75405 * 17 14 12 27 27 O 1.21446 * 125.70420 * 0.02562 * 26 17 14 28 28 H 1.09001 * 109.47034 * 275.08097 * 1 2 3 29 29 H 1.08998 * 109.46827 * 35.07877 * 1 2 3 30 30 H 1.08997 * 109.46995 * 155.07895 * 1 2 3 31 31 H 1.08993 * 109.47055 * 29.99872 * 3 2 1 32 32 H 1.09002 * 109.46560 * 150.00183 * 3 2 1 33 33 H 0.96999 * 120.00166 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.47134 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.46789 * 299.99294 * 15 14 12 36 36 H 1.08998 * 109.47496 * 59.99625 * 15 14 12 37 37 H 1.08997 * 109.46773 * 300.00347 * 16 14 12 38 38 H 1.09000 * 109.46547 * 60.00051 * 16 14 12 39 39 H 1.08994 * 109.47331 * 180.02562 * 16 14 12 40 40 H 1.08006 * 120.13835 * 359.92987 * 21 20 18 41 41 H 1.07991 * 119.77392 * 179.72249 * 22 21 20 42 42 H 1.07994 * 119.76829 * 180.24911 * 23 22 21 43 43 H 1.08002 * 120.13952 * 179.74820 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.5552 3.6171 -0.6732 8 14 3.4390 3.4162 -3.4340 9 1 2.8609 2.4163 -4.3673 10 1 2.8019 4.7371 -3.6677 11 1 4.9016 3.5239 -3.6670 12 6 2.1389 -1.1673 -0.0005 13 8 3.3516 -1.1674 -0.0112 14 6 1.3855 -2.4723 0.0123 15 6 0.4621 -2.5162 1.2314 16 6 2.3786 -3.6340 0.0825 17 7 0.5860 -2.5865 -1.2101 18 6 0.7614 -1.8292 -2.3080 19 8 1.5954 -0.9565 -2.4412 20 6 -0.2303 -2.2375 -3.3252 21 6 -0.5190 -1.8239 -4.6158 22 6 -1.5487 -2.4309 -5.3178 23 6 -2.2820 -3.4519 -4.7427 24 6 -2.0042 -3.8763 -3.4527 25 6 -0.9810 -3.2753 -2.7372 26 6 -0.4206 -3.4623 -1.3823 27 8 -0.8049 -4.2707 -0.5615 28 1 -0.3633 0.0910 1.0236 29 1 -0.3633 0.8410 -0.5906 30 1 -0.3633 -0.9320 -0.4330 31 1 1.6085 2.0283 0.5138 32 1 3.1500 1.1383 0.5138 33 1 4.0320 4.4430 -0.8505 34 1 -0.0832 -3.4600 1.2404 35 1 1.0569 -2.4313 2.1409 36 1 -0.2455 -1.6887 1.1814 37 1 3.0363 -3.6027 -0.7861 38 1 2.9734 -3.5489 0.9920 39 1 1.8336 -4.5779 0.0913 40 1 0.0528 -1.0289 -5.0712 41 1 -1.7774 -2.1062 -6.3220 42 1 -3.0792 -3.9198 -5.3011 43 1 -2.5831 -4.6718 -3.0071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613762167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:03:27 Heat of formation + Delta-G solvation = -15.844691 kcal Electronic energy + Delta-G solvation = -30048.596395 eV Core-core repulsion = 26061.504451 eV Total energy + Delta-G solvation = -3987.091943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.66581 -39.59877 -38.62899 -38.06324 -35.91673 -34.93128 -34.13574 -32.39681 -31.34500 -30.49414 -28.17513 -26.94372 -26.10086 -25.11988 -24.61899 -23.50447 -22.11666 -21.40328 -20.13712 -18.54629 -17.65927 -17.30435 -16.84197 -16.51951 -16.28904 -15.46310 -15.31362 -15.17333 -14.85102 -14.49101 -14.33039 -14.18337 -14.05722 -13.76128 -13.27105 -13.13051 -12.82804 -12.70840 -12.56243 -12.25805 -12.18930 -12.06166 -12.02949 -11.71678 -11.51654 -11.19170 -11.00671 -10.79698 -10.53319 -10.41917 -10.11997 -10.05545 -9.68018 -9.45662 -9.42175 -9.36285 -8.84850 -8.32460 -7.58166 -5.92353 -3.93119 -0.02694 0.75668 1.95290 2.14295 2.99259 3.35954 3.40477 3.42477 3.43843 3.50417 3.57054 3.88615 4.26018 4.40817 4.54441 4.61774 4.70597 4.82690 4.89885 4.99902 5.04126 5.16802 5.23157 5.42399 5.50425 5.54065 5.66004 5.67622 5.76063 5.81478 5.83598 5.85081 5.94151 6.03618 6.06560 6.20000 6.29445 6.34930 6.71584 7.06874 7.25221 7.48678 7.59300 7.74949 8.13813 8.37978 8.41145 8.95983 9.22061 9.70506 11.16747 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012116 B = 0.005497 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.446796 B = 5092.170153 C = 6736.804555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.584 5.584 3 C 0.248 3.752 4 C -0.512 4.512 5 H 0.078 0.922 6 C 0.055 3.945 7 N -0.902 5.902 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 C 0.518 3.482 13 O -0.522 6.522 14 C 0.149 3.851 15 C -0.179 4.179 16 C -0.140 4.140 17 N -0.566 5.566 18 C 0.540 3.460 19 O -0.387 6.387 20 C -0.125 4.125 21 C -0.048 4.048 22 C -0.095 4.095 23 C -0.104 4.104 24 C -0.047 4.047 25 C -0.143 4.143 26 C 0.578 3.422 27 O -0.469 6.469 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.043 0.957 33 H 0.259 0.741 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.953 -15.797 -5.528 22.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.316 5.316 3 C 0.129 3.871 4 C -0.551 4.551 5 H 0.096 0.904 6 C -0.145 4.145 7 N -0.543 5.543 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.211 1.211 12 C 0.302 3.698 13 O -0.398 6.398 14 C 0.064 3.936 15 C -0.237 4.237 16 C -0.198 4.198 17 N -0.311 5.311 18 C 0.326 3.674 19 O -0.252 6.252 20 C -0.128 4.128 21 C -0.067 4.067 22 C -0.113 4.113 23 C -0.122 4.122 24 C -0.066 4.066 25 C -0.146 4.146 26 C 0.367 3.633 27 O -0.342 6.342 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.157 0.843 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.849 -15.494 -5.046 21.385 hybrid contribution 0.137 0.488 -0.974 1.098 sum -13.712 -15.006 -6.021 21.200 Atomic orbital electron populations 1.21959 0.82326 1.02075 1.00738 1.47969 1.05544 1.07673 1.70394 1.19314 0.92218 0.77553 0.98011 1.21752 1.35079 1.05579 0.92690 0.90436 1.24948 0.95816 0.96633 0.97131 1.69958 1.39309 1.14506 1.30501 0.86473 0.77926 0.78014 0.85211 1.19710 1.21289 1.21121 1.19619 0.87844 0.84072 0.78252 1.90680 1.13114 1.86330 1.49654 1.21165 0.91934 0.97210 0.83281 1.22601 1.00079 1.05331 0.95646 1.21930 0.98038 0.95373 1.04470 1.46828 1.33132 1.35393 1.15792 1.18636 0.84831 0.81678 0.82257 1.91134 1.31721 1.24559 1.77784 1.20664 0.97839 0.98466 0.95870 1.20884 0.95943 0.98384 0.91456 1.21456 0.94258 0.95276 1.00323 1.21410 0.99557 0.96677 0.94532 1.20749 0.94347 0.98118 0.93388 1.20618 0.99318 0.99549 0.95145 1.18284 0.78707 0.79432 0.86854 1.90732 1.61213 1.33815 1.48427 0.93114 0.90904 0.92761 0.95184 0.93943 0.93097 0.89194 0.90207 0.90251 0.91314 0.89905 0.91562 0.83890 0.84216 0.84303 0.84241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 7.98 59.85 0.48 1.77 16 2 N -0.58 -13.03 1.95 -182.96 -0.36 -13.39 16 3 C 0.25 6.71 5.18 -5.20 -0.03 6.68 16 4 C -0.51 -14.99 9.24 -34.44 -0.32 -15.30 16 5 H 0.08 2.29 5.33 -52.48 -0.28 2.01 16 6 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 7 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 8 Si 0.90 22.72 29.54 -169.99 -5.02 17.70 16 9 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 12 C 0.52 11.39 4.42 -10.99 -0.05 11.34 16 13 O -0.52 -13.64 15.57 5.56 0.09 -13.55 16 14 C 0.15 2.53 0.69 -132.97 -0.09 2.43 16 15 C -0.18 -2.51 7.80 37.16 0.29 -2.22 16 16 C -0.14 -2.17 8.00 37.16 0.30 -1.87 16 17 N -0.57 -9.05 1.20 -104.88 -0.13 -9.17 16 18 C 0.54 9.42 6.25 -12.46 -0.08 9.34 16 19 O -0.39 -8.61 12.17 5.41 0.07 -8.54 16 20 C -0.12 -1.68 6.40 -104.84 -0.67 -2.35 16 21 C -0.05 -0.52 10.09 -39.32 -0.40 -0.91 16 22 C -0.10 -0.70 10.04 -39.44 -0.40 -1.10 16 23 C -0.10 -0.68 10.04 -39.44 -0.40 -1.08 16 24 C -0.05 -0.40 10.09 -39.32 -0.40 -0.80 16 25 C -0.14 -1.70 6.41 -104.84 -0.67 -2.37 16 26 C 0.58 8.10 7.47 -12.46 -0.09 8.01 16 27 O -0.47 -6.89 15.58 5.41 0.08 -6.80 16 28 H 0.05 0.77 7.24 -51.93 -0.38 0.39 16 29 H 0.07 1.32 8.11 -51.93 -0.42 0.90 16 30 H 0.05 0.87 3.72 -51.93 -0.19 0.67 16 31 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.04 1.29 7.43 -51.93 -0.39 0.90 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.09 1.19 5.99 -51.93 -0.31 0.88 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.08 1.09 4.32 -51.93 -0.22 0.86 16 37 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 38 H 0.08 1.23 8.13 -51.93 -0.42 0.81 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 41 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 43 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 349.41 15.07 5.27 5.27 Total: -1.00 -36.47 349.41 -7.01 -43.47 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -5.12 Total: -1.23 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: -2.62 Total: 13.10 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.25 Total: -49.42 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: 0.24 Total: -28.89 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.47 -7.01 -43.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613762167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.628 kcal (2) G-P(sol) polarization free energy of solvation -36.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds