Wall clock time and date at job start Tue Mar 31 2020 15:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47541 * 2 1 4 4 O 1.42898 * 109.47407 * 120.00609 * 2 1 3 5 5 C 1.35612 * 117.00103 * 83.09677 * 4 2 1 6 6 C 1.39140 * 119.88250 * 354.72445 * 5 4 2 7 7 C 1.36416 * 120.43281 * 179.75677 * 6 5 4 8 8 C 1.40905 * 120.19240 * 0.52226 * 7 6 5 9 9 C 1.41241 * 120.12314 * 179.76429 * 8 7 6 10 10 H 1.08007 * 119.99971 * 332.74615 * 9 8 7 11 11 C 1.39860 * 120.00491 * 152.75138 * 9 8 7 12 12 N 1.30898 * 120.00118 * 161.99458 * 11 9 8 13 13 Si 1.86800 * 119.99714 * 341.99606 * 11 9 8 14 14 H 1.48499 * 109.47300 * 95.24836 * 13 11 9 15 15 H 1.48503 * 109.47101 * 215.24917 * 13 11 9 16 16 H 1.48502 * 109.47232 * 335.24819 * 13 11 9 17 17 C 1.40622 * 119.76258 * 359.73726 * 8 7 6 18 18 C 1.38591 * 119.56772 * 359.97438 * 17 8 7 19 19 C 1.48335 * 120.09524 * 180.02562 * 18 17 8 20 20 C 1.39398 * 120.09263 * 64.70896 * 19 18 17 21 21 C 1.37951 * 119.89534 * 179.74365 * 20 19 18 22 22 C 1.38574 * 120.09951 * 0.55113 * 21 20 19 23 23 F 1.35096 * 119.90006 * 179.71830 * 22 21 20 24 24 C 1.38526 * 120.19639 * 359.69878 * 22 21 20 25 25 C 1.37992 * 120.09946 * 0.02562 * 24 22 21 26 26 C 1.50700 * 120.05034 * 179.97438 * 25 24 22 27 27 O 1.42901 * 109.47432 * 0.02562 * 26 25 24 28 28 H 1.08997 * 109.47209 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46763 * 59.99631 * 1 2 3 30 30 H 1.08999 * 109.46184 * 299.99935 * 1 2 3 31 31 H 1.09005 * 109.47004 * 240.00274 * 2 1 3 32 32 H 1.09005 * 109.46748 * 60.00117 * 3 2 1 33 33 H 1.08992 * 109.47235 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47331 * 300.00657 * 3 2 1 35 35 H 1.07995 * 119.77805 * 0.02562 * 6 5 4 36 36 H 1.08007 * 119.90406 * 180.23487 * 7 6 5 37 37 H 0.97000 * 119.99819 * 179.97438 * 12 11 9 38 38 H 1.07993 * 120.21531 * 180.02562 * 17 8 7 39 39 H 1.08000 * 120.04925 * 0.02562 * 20 19 18 40 40 H 1.07995 * 119.94907 * 180.24899 * 21 20 19 41 41 H 1.08008 * 119.95474 * 180.02562 * 24 22 21 42 42 H 1.08998 * 109.47267 * 120.02489 * 26 25 24 43 43 H 1.09005 * 109.47407 * 240.02239 * 26 25 24 44 44 H 0.96696 * 114.00516 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0748 -2.0270 1.1114 6 6 1.5873 -2.7007 -0.0041 7 6 1.6548 -4.0614 -0.0737 8 6 2.2103 -4.7987 0.9908 9 6 2.2749 -6.2078 0.9194 10 1 1.5564 -6.7519 0.3242 11 6 3.2693 -6.8987 1.6194 12 7 3.1369 -8.1803 1.8503 13 14 4.7864 -5.9924 2.2248 14 1 4.5848 -5.5778 3.6365 15 1 5.9669 -6.8889 2.1360 16 1 5.0134 -4.7901 1.3834 17 6 2.7005 -4.1265 2.1245 18 6 2.6324 -2.7435 2.1822 19 6 3.1466 -2.0224 3.3722 20 6 4.5051 -2.0639 3.6815 21 6 4.9798 -1.3875 4.7862 22 6 4.1065 -0.6770 5.5942 23 9 4.5748 -0.0207 6.6782 24 6 2.7548 -0.6373 5.2934 25 6 2.2721 -1.3063 4.1872 26 6 0.8014 -1.2629 3.8614 27 8 0.1204 -0.4717 4.8373 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5139 -0.8899 30 1 -0.3632 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.6768 1.9563 0.8901 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9564 -0.8899 35 1 1.1565 -2.1424 -0.8221 36 1 1.2772 -4.5754 -0.9454 37 1 3.8267 -8.6595 2.3354 38 1 3.1281 -4.6843 2.9445 39 1 5.1857 -2.6210 3.0548 40 1 6.0327 -1.4157 5.0244 41 1 2.0777 -0.0820 5.9256 42 1 0.6608 -0.8226 2.8743 43 1 0.3976 -2.2754 3.8685 44 1 -0.8325 -0.3995 4.6898 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596646921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:06 Heat of formation + Delta-G solvation = -97.246515 kcal Electronic energy + Delta-G solvation = -28870.154379 eV Core-core repulsion = 24859.612626 eV Total energy + Delta-G solvation = -4010.541753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.142 amu Computer time = 5.68 seconds Orbital eigenvalues (eV) -48.63355 -39.88364 -38.61956 -36.95397 -36.33037 -33.73041 -32.73584 -31.84066 -31.26258 -29.94040 -28.21897 -27.20658 -25.86052 -24.86276 -23.08883 -22.24862 -21.41020 -20.36762 -20.00648 -17.75416 -17.49160 -17.29963 -16.93348 -15.69449 -15.56247 -15.42662 -15.21204 -15.06414 -14.89519 -14.49340 -14.09435 -13.87499 -13.56730 -13.50904 -13.15659 -13.01776 -12.84727 -12.57975 -12.41149 -12.20371 -12.12538 -11.81596 -11.75033 -11.60963 -11.37896 -11.11571 -10.93204 -10.78440 -10.57439 -10.31876 -10.19976 -10.13147 -9.90308 -9.60490 -9.17163 -8.61677 -8.35005 -7.75688 -7.29357 -7.01028 -4.48458 1.36004 1.53272 2.35739 2.49112 3.05277 3.14581 3.23418 3.85086 3.86149 3.90701 4.31707 4.33248 4.49658 4.96260 5.01212 5.09027 5.15573 5.18665 5.24371 5.28597 5.56360 5.56778 5.63572 5.68528 5.76064 5.81131 5.82439 5.86996 5.90922 6.06749 6.16730 6.21263 6.27310 6.31557 6.37695 6.43936 6.54730 6.62728 6.80504 6.85340 7.08989 7.16602 7.22821 7.40401 7.64720 7.72802 7.78950 8.19040 8.29164 8.55553 8.71685 10.01589 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.008908 B = 0.006020 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3142.621021 B = 4650.411401 C = 6615.353685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.080 3.920 3 C -0.145 4.145 4 O -0.313 6.313 5 C 0.012 3.988 6 C -0.157 4.157 7 C -0.169 4.169 8 C 0.072 3.928 9 C -0.445 4.445 10 H 0.091 0.909 11 C 0.084 3.916 12 N -0.807 5.807 13 Si 0.901 3.099 14 H -0.266 1.266 15 H -0.290 1.290 16 H -0.242 1.242 17 C -0.197 4.197 18 C -0.044 4.044 19 C -0.015 4.015 20 C -0.086 4.086 21 C -0.156 4.156 22 C 0.080 3.920 23 F -0.147 7.147 24 C -0.134 4.134 25 C -0.041 4.041 26 C 0.114 3.886 27 O -0.575 6.575 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.285 0.715 38 H 0.109 0.891 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.140 0.860 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.048 13.813 0.292 13.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.023 3.977 3 C -0.203 4.203 4 O -0.229 6.229 5 C -0.032 4.032 6 C -0.176 4.176 7 C -0.188 4.188 8 C 0.069 3.931 9 C -0.473 4.473 10 H 0.109 0.891 11 C -0.135 4.135 12 N -0.432 5.432 13 Si 0.728 3.272 14 H -0.193 1.193 15 H -0.218 1.218 16 H -0.165 1.165 17 C -0.216 4.216 18 C -0.045 4.045 19 C -0.015 4.015 20 C -0.104 4.104 21 C -0.175 4.175 22 C 0.061 3.939 23 F -0.126 7.126 24 C -0.153 4.153 25 C -0.041 4.041 26 C 0.037 3.963 27 O -0.381 6.381 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.158 0.842 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -1.315 13.726 0.801 13.812 hybrid contribution 0.185 0.034 0.000 0.188 sum -1.130 13.761 0.800 13.830 Atomic orbital electron populations 1.22397 0.96170 1.03002 1.02061 1.22138 0.93567 0.93102 0.88843 1.21803 1.01879 0.94403 1.02167 1.85945 1.82575 1.17135 1.37238 1.18341 1.07229 0.81081 0.96515 1.20539 1.04355 0.95487 0.97206 1.20681 1.07144 0.92443 0.98550 1.17604 0.91716 0.93656 0.90135 1.19385 1.12811 0.89904 1.25203 0.89121 1.26126 1.00058 0.94869 0.92442 1.69711 1.33587 1.09713 1.30139 0.86485 0.79895 0.80460 0.80402 1.19264 1.21780 1.16477 1.20899 1.10034 0.91399 0.99247 1.17589 1.02833 0.92177 0.91889 1.18615 0.92400 0.96183 0.94346 1.21045 0.94834 0.98273 0.96206 1.20979 0.99799 1.00257 0.96449 1.17682 0.92728 0.97331 0.86171 1.91447 1.89194 1.79306 1.52665 1.20790 0.93261 1.02155 0.99081 1.19487 0.94651 0.96168 0.93770 1.21052 0.88514 0.94928 0.91809 1.86369 1.24562 1.73920 1.53246 0.91563 0.91957 0.92082 0.91596 0.91948 0.92024 0.91367 0.87510 0.87759 0.90406 0.87312 0.85180 0.85123 0.84210 0.89916 0.91913 0.77453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 9.12 37.16 0.34 -1.73 16 2 C 0.08 1.08 2.85 -26.73 -0.08 1.00 16 3 C -0.15 -1.62 9.56 37.16 0.36 -1.26 16 4 O -0.31 -5.33 7.20 -18.53 -0.13 -5.46 16 5 C 0.01 0.23 5.77 -38.44 -0.22 0.01 16 6 C -0.16 -2.96 8.07 -39.90 -0.32 -3.29 16 7 C -0.17 -3.57 9.72 -39.23 -0.38 -3.95 16 8 C 0.07 1.70 5.18 -106.85 -0.55 1.15 16 9 C -0.44 -11.43 9.57 -37.83 -0.36 -11.79 16 10 H 0.09 2.44 8.06 -52.48 -0.42 2.01 16 11 C 0.08 2.13 5.42 -17.34 -0.09 2.04 16 12 N -0.81 -21.00 13.93 55.54 0.77 -20.23 16 13 Si 0.90 20.09 24.43 -169.99 -4.15 15.94 16 14 H -0.27 -5.84 6.67 56.52 0.38 -5.46 16 15 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.24 -5.39 6.77 56.52 0.38 -5.01 16 17 C -0.20 -4.48 6.79 -38.55 -0.26 -4.74 16 18 C -0.04 -0.91 4.67 -104.80 -0.49 -1.40 16 19 C -0.02 -0.29 4.94 -104.90 -0.52 -0.81 16 20 C -0.09 -1.53 9.73 -39.25 -0.38 -1.91 16 21 C -0.16 -2.51 10.01 -39.56 -0.40 -2.91 16 22 C 0.08 1.32 7.30 -39.35 -0.29 1.04 16 23 F -0.15 -2.36 17.26 2.25 0.04 -2.32 16 24 C -0.13 -2.27 9.35 -39.57 -0.37 -2.64 16 25 C -0.04 -0.72 5.68 -104.30 -0.59 -1.31 16 26 C 0.11 1.80 6.26 36.01 0.23 2.03 16 27 O -0.58 -7.87 12.14 -35.23 -0.43 -8.30 16 28 H 0.07 0.84 6.70 -51.93 -0.35 0.49 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.90 6.41 -51.93 -0.33 0.56 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.11 1.72 5.31 -52.49 -0.28 1.44 16 36 H 0.10 2.08 8.06 -52.48 -0.42 1.65 16 37 H 0.29 6.77 8.30 -40.82 -0.34 6.43 16 38 H 0.11 2.55 4.34 -52.49 -0.23 2.33 16 39 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 40 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.14 2.24 7.00 -52.48 -0.37 1.88 16 42 H 0.08 1.32 5.61 -51.93 -0.29 1.03 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.38 3.31 9.12 45.56 0.42 3.73 16 LS Contribution 359.37 15.07 5.42 5.42 Total: -1.00 -27.63 359.37 -7.71 -35.34 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -4.84 Total: 10.11 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: -4.39 Total: -30.49 kcal Atomic # 7 Polarization: -21.00 SS G_CDS: 0.77 Total: -20.23 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.56 Total: -13.76 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.15 Total: 15.94 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.63 -7.71 -35.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596646921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.907 kcal (2) G-P(sol) polarization free energy of solvation -27.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.68 seconds