Wall clock time and date at job start Tue Mar 31 2020 16:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 114.00137 * 2 1 4 4 C 1.50706 * 109.47263 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99503 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00081 * 179.72605 * 4 3 2 7 7 C 1.47023 * 125.65051 * 359.69015 * 6 4 3 8 8 C 1.54305 * 107.27577 * 180.97228 * 7 6 4 9 9 C 1.55156 * 102.86663 * 22.52418 * 8 7 6 10 10 H 1.09008 * 111.00677 * 82.37872 * 9 8 7 11 11 C 1.53000 * 111.03998 * 206.21623 * 9 8 7 12 12 H 1.08996 * 109.47043 * 53.66504 * 11 9 8 13 13 C 1.53000 * 109.46985 * 293.66805 * 11 9 8 14 14 N 1.46504 * 109.47174 * 173.67032 * 11 9 8 15 15 C 1.34775 * 119.99663 * 205.00310 * 14 11 9 16 16 O 1.21274 * 120.00294 * 359.97438 * 15 14 11 17 17 C 1.50702 * 119.99789 * 180.02562 * 15 14 11 18 18 S 1.80998 * 109.47321 * 179.97438 * 17 15 14 19 19 C 1.76194 * 100.00057 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00446 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00025 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99752 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00322 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47099 * 89.99703 * 23 21 19 25 25 H 1.48494 * 109.47354 * 209.99848 * 23 21 19 26 26 H 1.48498 * 109.47024 * 330.00277 * 23 21 19 27 27 C 1.47429 * 125.64739 * 180.02562 * 6 4 3 28 28 H 1.09001 * 109.46459 * 300.00527 * 1 2 3 29 29 H 1.08994 * 109.46942 * 59.99884 * 1 2 3 30 30 H 1.08997 * 109.46916 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47678 * 60.00187 * 3 2 1 32 32 H 1.08998 * 109.47532 * 300.00132 * 3 2 1 33 33 H 1.09001 * 109.87660 * 300.51467 * 7 6 4 34 34 H 1.09000 * 109.88200 * 61.68006 * 7 6 4 35 35 H 1.09005 * 110.92591 * 264.11081 * 8 7 6 36 36 H 1.09006 * 110.74796 * 140.85373 * 8 7 6 37 37 H 1.09001 * 109.47141 * 180.02562 * 13 11 9 38 38 H 1.08995 * 109.47505 * 299.99808 * 13 11 9 39 39 H 1.09000 * 109.47486 * 60.00132 * 13 11 9 40 40 H 0.96993 * 120.00126 * 24.99909 * 14 11 9 41 41 H 1.09005 * 109.46938 * 299.99202 * 17 15 14 42 42 H 1.08999 * 109.47328 * 59.99282 * 17 15 14 43 43 H 0.97004 * 119.99722 * 179.97438 * 22 21 19 44 44 H 1.08994 * 110.36360 * 274.66925 * 27 6 4 45 45 H 1.08998 * 110.36888 * 36.88047 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0341 0.0914 0.0015 6 7 4.2766 2.2967 -0.0048 7 6 3.7781 3.6798 -0.0182 8 6 5.0088 4.6102 -0.0451 9 6 6.1204 3.6961 -0.6248 10 1 6.0683 3.6596 -1.7130 11 6 7.5048 4.1525 -0.1600 12 1 7.5182 4.2222 0.9276 13 6 7.8188 5.5232 -0.7628 14 7 8.5116 3.1834 -0.5998 15 6 9.6746 3.0684 0.0715 16 8 9.8879 3.7674 1.0393 17 6 10.7106 2.0719 -0.3812 18 16 12.1488 2.1568 0.7145 19 6 13.1692 0.9249 -0.0241 20 1 12.8231 0.3878 -0.8947 21 6 14.4185 0.6454 0.5124 22 7 14.8410 1.3011 1.5727 23 14 15.5002 -0.6611 -0.2702 24 1 16.3602 -0.0359 -1.3069 25 1 16.3548 -1.2852 0.7715 26 1 14.6453 -1.7008 -0.8974 27 6 5.7506 2.3254 -0.0055 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6888 1.8464 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.1667 3.8448 -0.9054 34 1 3.1909 3.8708 0.8801 35 1 5.2679 4.9422 0.9603 36 1 4.8326 5.4647 -0.6985 37 1 8.8053 5.8482 -0.4321 38 1 7.8054 5.4536 -1.8505 39 1 7.0698 6.2443 -0.4357 40 1 8.3412 2.6245 -1.3740 41 1 10.2875 1.0678 -0.3488 42 1 11.0170 2.3043 -1.4011 43 1 15.7139 1.1056 1.9478 44 1 6.1318 2.2545 1.0132 45 1 6.1456 1.5128 -0.6150 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049764821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:49 Heat of formation + Delta-G solvation = -117.461980 kcal Electronic energy + Delta-G solvation = -25567.486965 eV Core-core repulsion = 21711.432517 eV Total energy + Delta-G solvation = -3856.054448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.63902 -39.45523 -38.36810 -37.40032 -35.31143 -32.44631 -32.39416 -30.55778 -29.94166 -28.57717 -28.36030 -26.30908 -25.46494 -23.76462 -23.10027 -20.69734 -20.32288 -19.75208 -17.92999 -17.69229 -17.23212 -16.78779 -16.45387 -16.26881 -15.72992 -15.43795 -15.03679 -14.78167 -14.70644 -14.21379 -14.07531 -13.99834 -13.64816 -13.32691 -13.06047 -12.95704 -12.84103 -12.62002 -12.47938 -12.31802 -11.99845 -11.92491 -11.73632 -11.45710 -11.27649 -11.04244 -11.00571 -10.95018 -10.73211 -10.28014 -10.09949 -9.79402 -9.38630 -9.05227 -9.03877 -8.93083 -8.21938 -6.47774 -6.19709 -3.89956 2.26586 2.27559 3.01259 3.09548 3.24377 3.29358 3.33530 3.47548 3.67552 4.01626 4.04883 4.22654 4.30303 4.39208 4.56011 4.61324 4.71890 4.84191 4.87569 4.89391 4.90318 5.09908 5.15542 5.16221 5.19907 5.21474 5.28069 5.38971 5.50651 5.52770 5.57263 5.66533 5.72057 5.85341 5.91234 5.98959 6.15319 6.17689 6.51032 6.63332 7.08785 7.61974 7.69695 7.82576 8.37522 8.61271 9.25842 10.87698 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015648 B = 0.002228 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.907705 B =12562.093303 C =13991.254558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.049 3.951 4 C 0.527 3.473 5 O -0.514 6.514 6 N -0.621 5.621 7 C 0.098 3.902 8 C -0.122 4.122 9 C -0.109 4.109 10 H 0.092 0.908 11 C 0.156 3.844 12 H 0.091 0.909 13 C -0.163 4.163 14 N -0.737 5.737 15 C 0.535 3.465 16 O -0.517 6.517 17 C -0.155 4.155 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.113 3.887 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.075 0.925 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.009 7.902 -6.773 31.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.031 4.031 4 C 0.314 3.686 5 O -0.388 6.388 6 N -0.358 5.358 7 C -0.025 4.025 8 C -0.161 4.161 9 C -0.128 4.128 10 H 0.110 0.890 11 C 0.050 3.950 12 H 0.109 0.891 13 C -0.221 4.221 14 N -0.391 5.391 15 C 0.321 3.679 16 O -0.391 6.391 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.009 4.009 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.231 0.769 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -29.179 8.228 -4.998 30.726 hybrid contribution 0.093 -1.563 -2.027 2.561 sum -29.085 6.665 -7.025 30.655 Atomic orbital electron populations 1.22853 0.80189 1.03495 1.00116 1.88032 1.19919 1.25112 1.95406 1.22192 0.91353 0.87018 1.02506 1.19909 0.88369 0.83305 0.77002 1.90781 1.74420 1.25704 1.47851 1.48419 1.07455 1.05646 1.74293 1.22117 0.97478 0.81069 1.01879 1.22668 0.93015 0.97453 1.02928 1.22684 0.94406 0.94592 1.01166 0.88989 1.20792 0.85007 0.88674 1.00523 0.89052 1.22182 1.02918 0.96073 1.00936 1.46095 1.17623 1.41656 1.33708 1.20291 0.81724 0.83336 0.82516 1.90695 1.77606 1.44420 1.26380 1.23545 1.00898 1.00273 1.05816 1.85361 1.08517 1.51995 1.37481 1.22870 1.04052 1.24152 1.17242 0.90925 1.24994 0.96974 0.96739 0.94909 1.70020 1.19655 1.39860 1.20783 0.86167 0.79792 0.80733 0.78813 1.20295 1.20757 1.19675 1.22292 0.78893 0.97733 1.01966 0.93742 0.93771 0.88934 0.90249 0.90283 0.91116 0.91031 0.89652 0.89276 0.91416 0.92501 0.91766 0.76850 0.89175 0.89241 0.92211 0.90682 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.78 10.24 -55.14 -0.56 -4.34 16 3 C 0.05 0.38 5.61 36.01 0.20 0.58 16 4 C 0.53 6.00 7.93 -10.98 -0.09 5.92 16 5 O -0.51 -8.55 16.75 -14.36 -0.24 -8.79 16 6 N -0.62 -5.52 3.33 -170.54 -0.57 -6.09 16 7 C 0.10 0.47 6.48 -3.07 -0.02 0.45 16 8 C -0.12 -0.58 5.59 -24.91 -0.14 -0.72 16 9 C -0.11 -0.78 2.62 -88.48 -0.23 -1.01 16 10 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 11 C 0.16 1.57 2.09 -67.93 -0.14 1.42 16 12 H 0.09 1.11 7.55 -51.93 -0.39 0.71 16 13 C -0.16 -1.51 9.33 37.16 0.35 -1.16 16 14 N -0.74 -9.17 4.77 -53.81 -0.26 -9.43 16 15 C 0.54 9.66 7.81 -10.99 -0.09 9.58 16 16 O -0.52 -11.34 15.52 5.56 0.09 -11.25 16 17 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.53 -15.39 9.50 30.94 0.29 -15.10 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.58 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 23 Si 0.92 21.70 29.55 -169.99 -5.02 16.67 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 27 C 0.11 1.10 6.09 -2.54 -0.02 1.09 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.43 8.02 -51.93 -0.42 0.01 16 36 H 0.09 0.27 8.13 -51.93 -0.42 -0.15 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.45 7.50 -51.93 -0.39 0.06 16 40 H 0.40 3.98 8.60 -40.82 -0.35 3.63 16 41 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.07 0.85 8.03 -51.93 -0.42 0.43 16 45 H 0.08 0.92 8.03 -51.93 -0.42 0.51 16 LS Contribution 390.67 15.07 5.89 5.89 Total: -1.00 -38.91 390.67 -8.22 -47.13 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -7.42 Total: -1.75 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 1.36 Total: 1.44 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: -0.09 Total: -41.15 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.72 Total: -24.38 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.91 -8.22 -47.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049764821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.335 kcal (2) G-P(sol) polarization free energy of solvation -38.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds