Wall clock time and date at job start Tue Mar 31 2020 16:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42891 * 114.00085 * 2 1 4 4 C 1.50703 * 109.47626 * 180.02562 * 3 2 1 5 5 O 1.21281 * 119.99593 * 0.02562 * 4 3 2 6 6 N 1.34770 * 120.00592 * 179.97438 * 4 3 2 7 7 C 1.46497 * 120.00229 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47453 * 180.02562 * 7 6 4 9 9 H 1.09002 * 110.38599 * 52.76498 * 8 7 6 10 10 C 1.54391 * 110.34123 * 290.54204 * 8 7 6 11 11 N 1.48150 * 104.61300 * 264.99083 * 10 8 7 12 12 C 1.34779 * 127.83567 * 140.38921 * 11 10 8 13 13 O 1.21286 * 120.00007 * 0.02562 * 12 11 10 14 14 C 1.50690 * 120.00024 * 179.97438 * 12 11 10 15 15 S 1.81006 * 109.47216 * 180.02562 * 14 12 11 16 16 C 1.76197 * 99.99965 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00121 * 0.02562 * 16 15 14 18 18 C 1.38798 * 119.99862 * 180.02562 * 16 15 14 19 19 N 1.31626 * 120.00009 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99905 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47264 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47276 * 119.99788 * 20 18 16 23 23 H 1.48508 * 109.47084 * 239.99680 * 20 18 16 24 24 C 1.48415 * 104.33809 * 320.38760 * 11 10 8 25 25 C 1.54281 * 110.34627 * 175.00112 * 8 7 6 26 26 H 1.09002 * 110.34289 * 359.97438 * 25 8 7 27 27 C 1.52997 * 110.34394 * 237.84696 * 25 8 7 28 28 H 1.08994 * 109.46810 * 299.99122 * 1 2 3 29 29 H 1.08994 * 109.47604 * 59.99691 * 1 2 3 30 30 H 1.09008 * 109.46935 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46874 * 60.00345 * 3 2 1 32 32 H 1.09002 * 109.47692 * 300.00667 * 3 2 1 33 33 H 0.97008 * 119.99966 * 0.02562 * 6 4 3 34 34 H 1.09003 * 109.47122 * 60.00279 * 7 6 4 35 35 H 1.08996 * 109.46999 * 300.00383 * 7 6 4 36 36 H 1.08999 * 110.40947 * 23.77844 * 10 8 7 37 37 H 1.09001 * 110.40613 * 146.20921 * 10 8 7 38 38 H 1.09002 * 109.47556 * 300.00158 * 14 12 11 39 39 H 1.09003 * 109.47144 * 60.00161 * 14 12 11 40 40 H 0.97008 * 119.99953 * 180.02562 * 19 18 16 41 41 H 1.08997 * 110.44874 * 280.87091 * 24 11 10 42 42 H 1.09004 * 110.48780 * 158.35620 * 24 11 10 43 43 H 1.09005 * 109.47312 * 61.47223 * 27 25 8 44 44 H 1.08998 * 109.47322 * 181.47190 * 27 25 8 45 45 H 1.09005 * 109.47284 * 301.47582 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0015 6 7 4.2765 2.2968 -0.0013 7 6 5.7369 2.1811 -0.0025 8 6 6.3592 3.5788 -0.0023 9 1 5.9495 4.1768 0.8117 10 6 6.1125 4.2763 -1.3574 11 7 7.3357 4.0024 -2.1470 12 6 7.4236 3.7039 -3.4584 13 8 6.4183 3.6353 -4.1335 14 6 8.7710 3.4565 -4.0861 15 16 8.5582 3.0836 -5.8445 16 6 10.2400 2.8441 -6.3122 17 1 11.0245 2.9436 -5.5767 18 6 10.5566 2.5276 -7.6261 19 7 9.6004 2.4059 -8.5224 20 14 12.3395 2.2730 -8.1218 21 1 13.2148 2.4646 -6.9376 22 1 12.5148 0.8962 -8.6498 23 1 12.7065 3.2564 -9.1723 24 6 8.4425 4.1312 -1.1667 25 6 7.8940 3.4826 0.1225 26 1 8.2045 2.4396 0.1842 27 6 8.3770 4.2534 1.3527 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8462 0.8901 32 1 1.6885 1.8464 -0.8899 33 1 3.8593 3.1726 -0.0009 34 1 6.0578 1.6402 -0.8927 35 1 6.0592 1.6401 0.8872 36 1 5.2385 3.8506 -1.8504 37 1 5.9845 5.3493 -1.2148 38 1 9.3919 4.3457 -3.9763 39 1 9.2532 2.6134 -3.5913 40 1 9.8217 2.1843 -9.4406 41 1 8.6776 5.1813 -0.9936 42 1 9.3255 3.5956 -1.5156 43 1 7.9409 3.8152 2.2504 44 1 9.4639 4.1981 1.4125 45 1 8.0701 5.2963 1.2716 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052045708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:07 Heat of formation + Delta-G solvation = -116.267176 kcal Electronic energy + Delta-G solvation = -25753.433562 eV Core-core repulsion = 21897.430924 eV Total energy + Delta-G solvation = -3856.002638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.42269 -39.64797 -37.95149 -37.51055 -34.95656 -32.89722 -32.42549 -31.09377 -29.68689 -28.59831 -26.64877 -26.33539 -25.58158 -25.17186 -22.44853 -21.05438 -20.05599 -19.37058 -17.83840 -17.56288 -17.10820 -16.67482 -16.60305 -16.13255 -15.63607 -15.29178 -15.04362 -14.93749 -14.80229 -14.33734 -14.22099 -13.77177 -13.45310 -13.33659 -13.23682 -13.06699 -12.65479 -12.51300 -12.30249 -12.12474 -12.08006 -11.82586 -11.76381 -11.23226 -11.11487 -11.06744 -11.01043 -10.93480 -10.75026 -10.17111 -10.00431 -9.80459 -9.43507 -9.33439 -9.07217 -8.63550 -8.23032 -6.50167 -6.21457 -3.92123 2.38812 2.52716 2.86478 3.03276 3.22012 3.26123 3.31468 3.59555 3.71622 4.18083 4.21802 4.24739 4.32803 4.46240 4.68757 4.78906 4.83937 4.93289 4.94839 4.99194 5.01086 5.05884 5.13819 5.16282 5.29370 5.31675 5.40715 5.47596 5.50110 5.58856 5.65568 5.72629 5.76390 5.80380 5.88898 5.97048 6.10126 6.12720 6.33682 6.59965 7.19325 7.60027 7.67574 7.98245 8.35647 8.53160 9.23916 10.86062 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.002573 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.073725 B =10880.471793 C =12388.875857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.043 3.957 4 C 0.512 3.488 5 O -0.516 6.516 6 N -0.729 5.729 7 C 0.130 3.870 8 C -0.111 4.111 9 H 0.094 0.906 10 C 0.107 3.893 11 N -0.630 5.630 12 C 0.554 3.446 13 O -0.515 6.515 14 C -0.147 4.147 15 S -0.061 6.061 16 C -0.534 4.534 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.105 3.895 25 C -0.099 4.099 26 H 0.087 0.913 27 C -0.142 4.142 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.400 0.600 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.647 5.321 24.568 27.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.037 4.037 4 C 0.297 3.703 5 O -0.390 6.390 6 N -0.384 5.384 7 C 0.006 3.994 8 C -0.131 4.131 9 H 0.112 0.888 10 C -0.016 4.016 11 N -0.367 5.367 12 C 0.343 3.657 13 O -0.389 6.389 14 C -0.297 4.297 15 S 0.166 5.834 16 C -0.682 4.682 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.746 3.254 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.206 1.206 24 C -0.019 4.019 25 C -0.119 4.119 26 H 0.105 0.895 27 C -0.199 4.199 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.234 0.766 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.688 4.150 23.222 26.786 hybrid contribution 1.900 0.665 0.462 2.065 sum -10.788 4.816 23.683 26.466 Atomic orbital electron populations 1.22851 0.80261 1.03436 1.00139 1.88028 1.19877 1.25093 1.95418 1.22234 0.91590 0.87179 1.02683 1.20245 0.88716 0.84587 0.76734 1.90761 1.74586 1.26465 1.47169 1.45853 1.07195 1.08696 1.76608 1.21444 0.78467 0.96476 1.02971 1.22484 0.96267 0.96029 0.98333 0.88812 1.22317 0.89962 0.99404 0.89951 1.49048 1.08004 1.71762 1.07924 1.20010 0.91413 0.75090 0.79144 1.90714 1.37950 1.49990 1.60216 1.23500 0.96050 1.04576 1.05573 1.85420 1.11642 1.91108 0.95256 1.22890 0.92196 1.55430 0.97703 0.90873 1.25000 0.98571 0.94677 0.95390 1.70030 1.32080 1.45075 1.03072 0.86109 0.82746 0.78029 0.78561 1.19612 1.20538 1.20569 1.22522 0.91051 1.00839 0.87476 1.22098 0.93381 1.01304 0.95158 0.89480 1.21822 1.01613 1.00004 0.96503 0.93852 0.93637 0.89016 0.90274 0.89987 0.76567 0.90763 0.91036 0.89771 0.91172 0.89293 0.89278 0.92225 0.90848 0.89747 0.92197 0.91984 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.37 -4.14 10.24 -55.14 -0.56 -4.70 16 3 C 0.04 0.36 6.42 36.01 0.23 0.59 16 4 C 0.51 6.00 7.91 -10.99 -0.09 5.91 16 5 O -0.52 -8.79 16.50 -14.35 -0.24 -9.02 16 6 N -0.73 -6.31 5.16 -60.30 -0.31 -6.62 16 7 C 0.13 1.26 4.78 -4.04 -0.02 1.24 16 8 C -0.11 -0.83 2.75 -89.22 -0.24 -1.07 16 9 H 0.09 0.47 7.71 -51.93 -0.40 0.06 16 10 C 0.11 1.11 6.47 -2.41 -0.02 1.09 16 11 N -0.63 -8.67 3.32 -169.08 -0.56 -9.23 16 12 C 0.55 10.69 7.93 -10.99 -0.09 10.60 16 13 O -0.51 -11.98 16.13 5.55 0.09 -11.89 16 14 C -0.15 -3.02 5.14 36.00 0.19 -2.84 16 15 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 16 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 17 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 20 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.10 1.03 6.48 -2.26 -0.01 1.01 16 25 C -0.10 -0.75 3.30 -89.22 -0.29 -1.04 16 26 H 0.09 0.70 7.71 -51.93 -0.40 0.30 16 27 C -0.14 -0.76 8.91 37.16 0.33 -0.43 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.40 2.09 8.41 -40.82 -0.34 1.75 16 34 H 0.07 0.99 8.13 -51.93 -0.42 0.56 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 1.01 7.31 -51.93 -0.38 0.63 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 39 H 0.09 1.72 7.96 -51.92 -0.41 1.31 16 40 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.07 0.62 7.85 -51.93 -0.41 0.21 16 42 H 0.08 0.86 7.32 -51.93 -0.38 0.48 16 43 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.29 8.12 -51.93 -0.42 -0.13 16 LS Contribution 390.16 15.07 5.88 5.88 Total: -1.00 -39.60 390.16 -8.25 -47.85 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -7.34 Total: -2.60 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 1.29 Total: 3.35 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.14 Total: -41.50 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.71 Total: -25.62 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -39.60 -8.25 -47.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052045708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.417 kcal (2) G-P(sol) polarization free energy of solvation -39.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds