Wall clock time and date at job start Tue Mar 31 2020 16:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42891 * 114.00085 * 2 1 4 4 C 1.50703 * 109.47626 * 180.02562 * 3 2 1 5 5 O 1.21281 * 119.99593 * 0.02562 * 4 3 2 6 6 N 1.34770 * 120.00592 * 179.97438 * 4 3 2 7 7 C 1.46497 * 120.00229 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47453 * 180.02562 * 7 6 4 9 9 H 1.09002 * 110.38599 * 52.76498 * 8 7 6 10 10 C 1.54391 * 110.34123 * 290.54204 * 8 7 6 11 11 N 1.48150 * 104.61300 * 264.99083 * 10 8 7 12 12 C 1.34779 * 127.83567 * 140.38921 * 11 10 8 13 13 O 1.21286 * 120.00007 * 0.02562 * 12 11 10 14 14 C 1.50690 * 120.00024 * 179.97438 * 12 11 10 15 15 S 1.81006 * 109.47216 * 180.02562 * 14 12 11 16 16 C 1.76197 * 99.99965 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00121 * 0.02562 * 16 15 14 18 18 C 1.38798 * 119.99862 * 180.02562 * 16 15 14 19 19 N 1.31626 * 120.00009 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99905 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47264 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47276 * 119.99788 * 20 18 16 23 23 H 1.48508 * 109.47084 * 239.99680 * 20 18 16 24 24 C 1.48415 * 104.33809 * 320.38760 * 11 10 8 25 25 C 1.54281 * 110.34627 * 175.00112 * 8 7 6 26 26 H 1.09002 * 110.34289 * 359.97438 * 25 8 7 27 27 C 1.52997 * 110.34394 * 237.84696 * 25 8 7 28 28 H 1.08994 * 109.46810 * 299.99122 * 1 2 3 29 29 H 1.08994 * 109.47604 * 59.99691 * 1 2 3 30 30 H 1.09008 * 109.46935 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46874 * 60.00345 * 3 2 1 32 32 H 1.09002 * 109.47692 * 300.00667 * 3 2 1 33 33 H 0.97008 * 119.99966 * 0.02562 * 6 4 3 34 34 H 1.09003 * 109.47122 * 60.00279 * 7 6 4 35 35 H 1.08996 * 109.46999 * 300.00383 * 7 6 4 36 36 H 1.08999 * 110.40947 * 23.77844 * 10 8 7 37 37 H 1.09001 * 110.40613 * 146.20921 * 10 8 7 38 38 H 1.09002 * 109.47556 * 300.00158 * 14 12 11 39 39 H 1.09003 * 109.47144 * 60.00161 * 14 12 11 40 40 H 0.97008 * 119.99953 * 180.02562 * 19 18 16 41 41 H 1.08997 * 110.44874 * 280.87091 * 24 11 10 42 42 H 1.09004 * 110.48780 * 158.35620 * 24 11 10 43 43 H 1.09005 * 109.47312 * 61.47223 * 27 25 8 44 44 H 1.08998 * 109.47322 * 181.47190 * 27 25 8 45 45 H 1.09005 * 109.47284 * 301.47582 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0015 6 7 4.2765 2.2968 -0.0013 7 6 5.7369 2.1811 -0.0025 8 6 6.3592 3.5788 -0.0023 9 1 5.9495 4.1768 0.8117 10 6 6.1125 4.2763 -1.3574 11 7 7.3357 4.0024 -2.1470 12 6 7.4236 3.7039 -3.4584 13 8 6.4183 3.6353 -4.1335 14 6 8.7710 3.4565 -4.0861 15 16 8.5582 3.0836 -5.8445 16 6 10.2400 2.8441 -6.3122 17 1 11.0245 2.9436 -5.5767 18 6 10.5566 2.5276 -7.6261 19 7 9.6004 2.4059 -8.5224 20 14 12.3395 2.2730 -8.1218 21 1 13.2148 2.4646 -6.9376 22 1 12.5148 0.8962 -8.6498 23 1 12.7065 3.2564 -9.1723 24 6 8.4425 4.1312 -1.1667 25 6 7.8940 3.4826 0.1225 26 1 8.2045 2.4396 0.1842 27 6 8.3770 4.2534 1.3527 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8462 0.8901 32 1 1.6885 1.8464 -0.8899 33 1 3.8593 3.1726 -0.0009 34 1 6.0578 1.6402 -0.8927 35 1 6.0592 1.6401 0.8872 36 1 5.2385 3.8506 -1.8504 37 1 5.9845 5.3493 -1.2148 38 1 9.3919 4.3457 -3.9763 39 1 9.2532 2.6134 -3.5913 40 1 9.8217 2.1843 -9.4406 41 1 8.6776 5.1813 -0.9936 42 1 9.3255 3.5956 -1.5156 43 1 7.9409 3.8152 2.2504 44 1 9.4639 4.1981 1.4125 45 1 8.0701 5.2963 1.2716 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052045708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:06 Heat of formation + Delta-G solvation = -146.327094 kcal Electronic energy + Delta-G solvation = -25754.737058 eV Core-core repulsion = 21897.430924 eV Total energy + Delta-G solvation = -3857.306134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.38735 -40.67190 -39.06941 -38.36746 -35.92355 -34.61419 -33.88432 -31.94684 -30.92838 -29.47232 -27.75364 -27.33319 -27.03491 -26.13188 -23.23684 -21.94610 -20.82426 -20.69238 -19.60618 -18.53168 -18.00344 -17.82073 -17.40883 -17.07058 -16.91244 -16.63983 -16.42312 -16.03341 -15.90731 -15.68159 -15.26798 -15.02311 -14.66189 -14.25724 -14.12822 -14.00451 -13.82662 -13.49800 -13.24790 -13.19565 -13.03752 -12.96431 -12.93124 -12.67474 -12.60580 -12.38032 -11.92047 -11.78148 -11.71358 -11.56233 -11.18212 -10.97695 -10.93774 -10.78649 -10.31248 -10.20589 -9.78197 -8.71108 -8.37219 -6.16204 1.21618 1.40059 1.43000 1.50431 1.54228 1.55467 1.82216 2.06470 2.24812 2.97000 3.09749 3.21159 3.45130 3.51308 3.64355 3.74261 3.87446 4.15343 4.17977 4.20300 4.24700 4.30016 4.36860 4.40509 4.48647 4.52596 4.56450 4.65335 4.67543 4.72363 4.80737 4.85869 4.90657 4.99979 5.15961 5.24472 5.32187 5.38305 5.39290 5.55556 6.02312 6.17479 6.40674 6.49402 7.03831 7.09543 7.17927 8.72470 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.002573 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.073725 B =10880.471793 C =12388.875857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.045 3.955 4 C 0.503 3.497 5 O -0.582 6.582 6 N -0.712 5.712 7 C 0.131 3.869 8 C -0.092 4.092 9 H 0.138 0.862 10 C 0.100 3.900 11 N -0.624 5.624 12 C 0.550 3.450 13 O -0.569 6.569 14 C -0.120 4.120 15 S -0.153 6.153 16 C -0.544 4.544 17 H 0.083 0.917 18 C 0.012 3.988 19 N -0.912 5.912 20 Si 1.001 2.999 21 H -0.256 1.256 22 H -0.274 1.274 23 H -0.272 1.272 24 C 0.095 3.905 25 C -0.093 4.093 26 H 0.077 0.923 27 C -0.135 4.135 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.103 0.897 33 H 0.420 0.580 34 H 0.029 0.971 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.272 0.728 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.830 7.414 27.595 30.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.034 4.034 4 C 0.290 3.710 5 O -0.461 6.461 6 N -0.366 5.366 7 C 0.007 3.993 8 C -0.111 4.111 9 H 0.155 0.845 10 C -0.022 4.022 11 N -0.359 5.359 12 C 0.339 3.661 13 O -0.447 6.447 14 C -0.271 4.271 15 S 0.074 5.926 16 C -0.692 4.692 17 H 0.101 0.899 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.822 3.178 21 H -0.179 1.179 22 H -0.200 1.200 23 H -0.197 1.197 24 C -0.027 4.027 25 C -0.113 4.113 26 H 0.096 0.904 27 C -0.193 4.193 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.138 0.862 32 H 0.120 0.880 33 H 0.258 0.742 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.081 0.919 41 H 0.118 0.882 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.878 6.317 26.328 29.566 hybrid contribution 1.583 0.058 -0.339 1.620 sum -10.295 6.375 25.989 28.671 Atomic orbital electron populations 1.23035 0.78202 1.04130 1.01737 1.87969 1.22271 1.26994 1.95815 1.22407 0.88798 0.86769 1.05475 1.21047 0.90499 0.84108 0.75375 1.90726 1.75964 1.28934 1.50446 1.45737 1.06777 1.09154 1.74956 1.21361 0.79232 0.97721 1.00963 1.22457 0.96343 0.94518 0.97823 0.84466 1.22652 0.87748 1.01415 0.90350 1.48987 1.11118 1.69161 1.06633 1.19684 0.89944 0.75535 0.80957 1.90686 1.38995 1.52925 1.62139 1.23292 0.97823 1.05707 1.00261 1.85597 1.13195 1.91729 1.02098 1.23209 0.92086 1.55512 0.98407 0.89915 1.26170 1.03933 0.93948 0.95237 1.70195 1.34893 1.46123 1.03605 0.84876 0.76187 0.78076 0.78616 1.17930 1.19981 1.19708 1.22917 0.89765 1.02737 0.87240 1.22078 0.93030 1.01116 0.95093 0.90434 1.21794 1.01867 1.00362 0.95237 0.91585 0.92586 0.88968 0.86230 0.87962 0.74202 0.95247 0.90745 0.91822 0.88116 0.87397 0.88057 0.91948 0.88163 0.90257 0.91064 0.91725 0.90810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -9.19 10.24 -129.94 -1.33 -10.52 16 3 C 0.04 0.69 6.42 71.24 0.46 1.14 16 4 C 0.50 11.77 7.91 87.66 0.69 12.47 16 5 O -0.58 -20.88 16.50 16.01 0.26 -20.62 16 6 N -0.71 -11.50 5.16 -463.07 -2.39 -13.89 16 7 C 0.13 2.45 4.78 86.38 0.41 2.87 16 8 C -0.09 -1.09 2.75 -9.89 -0.03 -1.12 16 9 H 0.14 0.59 7.71 -2.39 -0.02 0.57 16 10 C 0.10 1.86 6.47 86.53 0.56 2.42 16 11 N -0.62 -16.50 3.32 -807.25 -2.68 -19.18 16 12 C 0.55 21.61 7.93 87.65 0.70 22.31 16 13 O -0.57 -27.71 16.13 -3.05 -0.05 -27.76 16 14 C -0.12 -5.01 5.14 71.23 0.37 -4.64 16 15 S -0.15 -8.81 20.57 -56.49 -1.16 -9.97 16 16 C -0.54 -31.74 9.50 67.95 0.65 -31.10 16 17 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 18 C 0.01 0.68 5.49 84.86 0.47 1.15 16 19 N -0.91 -57.01 13.22 21.65 0.29 -56.72 16 20 Si 1.00 44.27 29.55 68.60 2.03 46.30 16 21 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 24 C 0.10 1.62 6.48 86.48 0.56 2.18 16 25 C -0.09 -1.12 3.30 -9.89 -0.03 -1.15 16 26 H 0.08 1.13 7.71 -2.39 -0.02 1.11 16 27 C -0.14 -0.84 8.91 71.98 0.64 -0.19 16 28 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 30 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.42 3.28 8.41 -92.70 -0.78 2.50 16 34 H 0.03 0.83 8.13 -2.39 -0.02 0.81 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 1.48 7.31 -2.39 -0.02 1.46 16 37 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.11 4.05 8.14 -2.39 -0.02 4.04 16 39 H 0.10 3.94 7.96 -2.39 -0.02 3.92 16 40 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 41 H 0.10 1.26 7.85 -2.39 -0.02 1.25 16 42 H 0.08 1.46 7.32 -2.39 -0.02 1.44 16 43 H 0.07 0.34 8.14 -2.38 -0.02 0.32 16 44 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.07 0.30 8.12 -2.38 -0.02 0.28 16 Total: -1.00 -94.07 390.16 1.86 -92.21 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.20 Total: 12.28 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 6.69 Total: 7.88 kcal Atomic # 7 Polarization: -85.01 SS G_CDS: -4.78 Total: -89.80 kcal Atomic # 8 Polarization: -57.78 SS G_CDS: -1.12 Total: -58.90 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.16 Total: -9.97 kcal Total: -94.07 1.86 -92.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052045708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.113 kcal (2) G-P(sol) polarization free energy of solvation -94.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds