Wall clock time and date at job start Tue Mar 31 2020 16:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47163 * 2 1 4 4 S 1.81396 * 109.47051 * 180.02562 * 3 2 1 5 5 O 1.42107 * 108.57607 * 294.48307 * 4 3 2 6 6 O 1.42101 * 108.58171 * 65.50836 * 4 3 2 7 7 C 1.81405 * 101.92048 * 179.97438 * 4 3 2 8 8 C 1.50700 * 109.46748 * 179.97438 * 7 4 3 9 9 O 1.21282 * 120.00298 * 359.97438 * 8 7 4 10 10 N 1.34775 * 119.99692 * 179.97438 * 8 7 4 11 11 C 1.46504 * 120.00078 * 179.97438 * 10 8 7 12 12 H 1.09006 * 110.55463 * 36.45350 * 11 10 8 13 13 C 1.54843 * 110.63127 * 273.55230 * 11 10 8 14 14 C 1.55842 * 103.44724 * 241.50744 * 13 11 10 15 15 H 1.09005 * 115.55803 * 159.55920 * 14 13 11 16 16 C 1.55836 * 105.06678 * 288.17370 * 14 13 11 17 17 C 1.54857 * 103.44342 * 71.82380 * 16 14 13 18 18 C 1.55837 * 103.44625 * 359.97438 * 17 16 14 19 19 H 1.09000 * 115.56210 * 159.56733 * 18 17 16 20 20 N 1.50239 * 101.04957 * 32.94050 * 18 17 16 21 21 C 1.36938 * 130.83841 * 126.01269 * 20 18 17 22 22 H 1.07996 * 120.00329 * 5.09169 * 21 20 18 23 23 C 1.38814 * 119.99733 * 185.08697 * 21 20 18 24 24 N 1.31622 * 120.00295 * 9.00441 * 23 21 20 25 25 Si 1.86805 * 119.99937 * 188.99509 * 23 21 20 26 26 H 1.48502 * 109.46538 * 94.08846 * 25 23 21 27 27 H 1.48502 * 109.47167 * 214.08849 * 25 23 21 28 28 H 1.48497 * 109.47397 * 334.09200 * 25 23 21 29 29 H 1.09001 * 109.47068 * 300.00584 * 1 2 3 30 30 H 1.09001 * 109.46568 * 60.00055 * 1 2 3 31 31 H 1.08989 * 109.46930 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46542 * 119.99444 * 2 1 3 33 33 H 1.08992 * 109.47291 * 239.99460 * 2 1 3 34 34 H 1.09007 * 109.46687 * 299.99684 * 3 2 1 35 35 H 1.08992 * 109.47458 * 59.99562 * 3 2 1 36 36 H 1.09002 * 109.46785 * 299.99309 * 7 4 3 37 37 H 1.08994 * 109.47112 * 59.99565 * 7 4 3 38 38 H 0.96996 * 120.00154 * 0.02562 * 10 8 7 39 39 H 1.09007 * 110.62616 * 0.02562 * 13 11 10 40 40 H 1.09002 * 110.62834 * 123.01613 * 13 11 10 41 41 H 1.08996 * 110.62838 * 190.31342 * 16 14 13 42 42 H 1.08994 * 110.62657 * 313.33721 * 16 14 13 43 43 H 1.08997 * 110.62872 * 118.49146 * 17 16 14 44 44 H 1.09001 * 110.62473 * 241.35293 * 17 16 14 45 45 H 0.96997 * 120.00221 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 3.8541 1.4425 -0.0008 5 8 4.3073 0.8840 1.2249 6 8 4.3064 0.8843 -1.2268 7 6 4.2288 3.2174 -0.0015 8 6 5.7227 3.4153 -0.0015 9 8 6.4619 2.4537 -0.0006 10 7 6.2374 4.6609 -0.0025 11 6 7.6898 4.8534 -0.0020 12 1 8.1773 4.0892 -0.6074 13 6 8.2417 4.8375 1.4446 14 6 8.8651 6.2562 1.6103 15 1 9.0021 6.5926 2.6380 16 6 10.1518 6.2385 0.7314 17 6 9.5998 6.2544 -0.7154 18 6 8.0548 6.2789 -0.5135 19 1 7.4748 6.6358 -1.3646 20 7 7.9427 7.0767 0.7546 21 6 7.2220 8.2051 1.0419 22 1 6.5418 8.6127 0.3088 23 6 7.3657 8.8249 2.2756 24 7 8.3168 8.4387 3.0995 25 14 6.2094 10.2075 2.7665 26 1 5.0791 9.6515 3.5532 27 1 6.9456 11.1994 3.5908 28 1 5.6841 10.8705 1.5460 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.6768 1.9563 -0.8901 35 1 1.6768 1.9564 0.8899 36 1 3.8008 3.6787 -0.8915 37 1 3.8014 3.6793 0.8885 38 1 5.6463 5.4299 -0.0028 39 1 7.4349 4.6860 2.1618 40 1 9.0050 4.0674 1.5560 41 1 10.7584 7.1241 0.9207 42 1 10.7280 5.3312 0.9125 43 1 9.9327 7.1478 -1.2436 44 1 9.9047 5.3563 -1.2525 45 1 8.4174 8.8721 3.9614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111417618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:47 Heat of formation + Delta-G solvation = -67.377784 kcal Electronic energy + Delta-G solvation = -27034.369450 eV Core-core repulsion = 23180.486815 eV Total energy + Delta-G solvation = -3853.882635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -39.97618 -38.54149 -37.02624 -36.07950 -35.21462 -34.01019 -32.61030 -30.85260 -29.17852 -28.80124 -28.11973 -27.42331 -24.26257 -22.51692 -21.68765 -20.15591 -19.88693 -18.97875 -18.69787 -17.47082 -17.08274 -16.74030 -16.60435 -16.11045 -15.58412 -15.40324 -14.88993 -14.74459 -14.07718 -13.99475 -13.93406 -13.52963 -13.04397 -12.94627 -12.90091 -12.78830 -12.11548 -12.07856 -12.01792 -11.90686 -11.86168 -11.32848 -11.31832 -11.20705 -11.17943 -11.00635 -10.95348 -10.64910 -10.57695 -10.40962 -10.15931 -10.12223 -9.98021 -9.40436 -9.20729 -8.95574 -8.67239 -7.01703 -5.83479 -3.20171 -0.27795 2.59579 2.60307 3.11197 3.30159 3.35034 3.38532 3.71380 3.82794 4.19254 4.31459 4.34148 4.58806 4.69713 4.70850 4.96002 5.01462 5.05789 5.12949 5.21928 5.26578 5.53856 5.56272 5.57449 5.61474 5.74003 5.82238 6.00219 6.02657 6.10393 6.22194 6.36809 6.43001 6.53882 6.68593 6.77926 6.88898 6.99716 7.26082 7.40793 7.68844 7.72617 8.05759 8.29029 8.98460 9.62767 10.44965 11.27486 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015557 B = 0.003187 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.426260 B = 8783.363802 C = 9969.014575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C -0.622 4.622 4 S 2.452 3.548 5 O -0.919 6.919 6 O -0.922 6.922 7 C -0.660 4.660 8 C 0.536 3.464 9 O -0.540 6.540 10 N -0.691 5.691 11 C 0.125 3.875 12 H 0.083 0.917 13 C -0.147 4.147 14 C 0.159 3.841 15 H 0.145 0.855 16 C -0.136 4.136 17 C -0.128 4.128 18 C 0.126 3.874 19 H 0.089 0.911 20 N -0.589 5.589 21 C -0.220 4.220 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.915 5.915 25 Si 0.913 3.087 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.406 0.594 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.700 -10.928 -6.958 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.750 4.750 4 S 2.630 3.370 5 O -0.916 6.916 6 O -0.919 6.919 7 C -0.788 4.788 8 C 0.319 3.681 9 O -0.419 6.419 10 N -0.340 5.340 11 C 0.019 3.981 12 H 0.101 0.899 13 C -0.187 4.187 14 C 0.052 3.948 15 H 0.162 0.838 16 C -0.176 4.176 17 C -0.168 4.168 18 C 0.017 3.983 19 H 0.107 0.893 20 N -0.310 5.310 21 C -0.348 4.348 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.561 5.561 25 Si 0.744 3.256 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.175 0.825 37 H 0.176 0.824 38 H 0.241 0.759 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.649 -11.983 -6.762 18.028 hybrid contribution -1.536 2.097 0.276 2.614 sum -13.185 -9.887 -6.486 17.710 Atomic orbital electron populations 1.21732 0.93917 1.02373 1.02363 1.21274 0.98356 0.91835 1.04127 1.30508 1.26345 1.06481 1.11689 1.07407 0.77232 0.76572 0.75825 1.93586 1.78448 1.73838 1.45757 1.93571 1.78571 1.73928 1.45841 1.30863 1.04111 1.30499 1.13288 1.19033 0.87046 0.84703 0.77313 1.90830 1.60527 1.39627 1.50927 1.45903 1.09267 1.06684 1.72141 1.22794 0.78044 0.98856 0.98360 0.89873 1.23501 1.00140 0.99996 0.95058 1.23521 0.86686 0.86195 0.98355 0.83779 1.23036 0.99329 0.99727 0.95474 1.22879 0.96558 0.99903 0.97503 1.23127 0.94852 0.89370 0.90957 0.89286 1.46528 1.51581 1.27261 1.05652 1.18986 1.15984 1.00698 0.99113 0.90397 1.24730 0.98718 0.99525 0.97471 1.69619 1.32355 1.44055 1.10110 0.86087 0.80049 0.81296 0.78190 1.21737 1.21746 1.20732 0.92216 0.92259 0.91885 0.90014 0.90060 0.84896 0.84808 0.82545 0.82365 0.75915 0.92195 0.92321 0.92341 0.93293 0.92340 0.92928 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.12 -0.85 5.94 -26.73 -0.16 -1.00 16 3 C -0.62 -3.97 5.81 37.16 0.22 -3.76 16 4 S 2.45 28.21 3.96 -107.50 -0.43 27.79 16 5 O -0.92 -14.43 17.95 -59.54 -1.07 -15.50 16 6 O -0.92 -13.89 17.95 -59.51 -1.07 -14.96 16 7 C -0.66 -6.70 6.29 36.01 0.23 -6.47 16 8 C 0.54 8.67 7.85 -10.99 -0.09 8.59 16 9 O -0.54 -10.88 15.34 2.55 0.04 -10.84 16 10 N -0.69 -11.26 5.10 -51.43 -0.26 -11.52 16 11 C 0.13 2.29 2.73 -65.47 -0.18 2.11 16 12 H 0.08 1.52 7.37 -51.93 -0.38 1.14 16 13 C -0.15 -2.96 6.22 -24.24 -0.15 -3.11 16 14 C 0.16 3.56 4.65 -62.83 -0.29 3.26 16 15 H 0.15 3.70 5.76 -51.93 -0.30 3.41 16 16 C -0.14 -2.69 6.44 -24.24 -0.16 -2.84 16 17 C -0.13 -2.30 6.44 -24.24 -0.16 -2.46 16 18 C 0.13 2.37 5.04 -62.84 -0.32 2.05 16 19 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 20 N -0.59 -13.53 2.98 -145.89 -0.43 -13.97 16 21 C -0.22 -5.57 10.56 -15.06 -0.16 -5.73 16 22 H 0.08 1.89 7.84 -52.49 -0.41 1.48 16 23 C -0.01 -0.21 5.47 -17.43 -0.10 -0.30 16 24 N -0.91 -25.23 10.64 55.49 0.59 -24.64 16 25 Si 0.91 20.79 29.56 -169.99 -5.03 15.76 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.13 0.51 8.14 -51.92 -0.42 0.08 16 35 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.16 0.95 8.14 -51.92 -0.42 0.53 16 37 H 0.16 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.41 5.98 8.62 -40.82 -0.35 5.63 16 39 H 0.06 1.28 7.98 -51.93 -0.41 0.87 16 40 H 0.06 1.12 7.82 -51.93 -0.41 0.71 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.05 0.87 7.81 -51.93 -0.41 0.46 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.83 7.83 -51.93 -0.41 0.42 16 45 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 375.18 15.07 5.65 5.65 Total: -1.00 -35.93 375.18 -10.23 -46.16 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -7.29 Total: 6.17 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -0.94 Total: -10.10 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.11 Total: -50.13 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -2.10 Total: -41.30 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Atomic # 16 Polarization: 28.21 SS G_CDS: -0.43 Total: 27.79 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.93 -10.23 -46.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111417618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.217 kcal (2) G-P(sol) polarization free energy of solvation -35.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds