Wall clock time and date at job start Tue Mar 31 2020 18:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35736 * 117.00062 * 2 1 4 4 C 1.39295 * 120.84426 * 359.97438 * 3 2 1 5 5 C 1.37949 * 119.09059 * 180.02562 * 4 3 2 6 6 N 1.31980 * 120.82499 * 359.97438 * 5 4 3 7 7 C 1.31945 * 121.86438 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.59060 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47293 * 305.00130 * 8 7 6 10 10 O 1.21283 * 119.99808 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00265 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99868 * 359.97438 * 11 9 8 13 13 C 1.50703 * 109.47289 * 89.99907 * 12 11 9 14 14 H 1.07994 * 119.99399 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99789 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99734 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00111 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47123 * 89.99915 * 17 15 13 19 19 H 1.48498 * 109.47161 * 209.99603 * 17 15 13 20 20 H 1.48497 * 109.47329 * 329.99749 * 17 15 13 21 21 C 1.46498 * 120.00377 * 179.97438 * 11 9 8 22 22 C 1.50704 * 109.47158 * 270.00187 * 21 11 9 23 23 C 1.34508 * 125.78966 * 89.71164 * 22 21 11 24 24 C 1.41389 * 106.84038 * 179.89105 * 23 22 21 25 25 C 1.34515 * 106.83869 * 0.37096 * 24 23 22 26 26 O 1.34298 * 125.78736 * 270.01953 * 22 21 11 27 27 C 1.37991 * 120.82314 * 0.26916 * 7 6 5 28 28 H 1.09002 * 109.47183 * 60.00323 * 1 2 3 29 29 H 1.08996 * 109.47228 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47347 * 299.99866 * 1 2 3 31 31 H 1.07999 * 120.45312 * 0.02601 * 4 3 2 32 32 H 1.07996 * 119.58776 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47462 * 184.99400 * 8 7 6 34 34 H 1.09005 * 109.46968 * 64.99835 * 8 7 6 35 35 H 1.09001 * 109.47060 * 210.00357 * 12 11 9 36 36 H 1.09004 * 109.47073 * 329.99846 * 12 11 9 37 37 H 0.97007 * 120.00011 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.46694 * 29.99578 * 21 11 9 39 39 H 1.08995 * 109.47258 * 149.99854 * 21 11 9 40 40 H 1.07998 * 126.58421 * 0.02562 * 23 22 21 41 41 H 1.07997 * 126.57555 * 180.16762 * 24 23 22 42 42 H 1.07998 * 125.78768 * 179.74826 * 25 24 23 43 43 H 1.07998 * 120.45685 * 179.70939 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3039 2.3887 -0.0005 5 6 1.9675 3.5981 -0.0011 6 7 3.2864 3.6458 -0.0005 7 6 4.0230 2.5511 0.0000 8 6 5.5256 2.6652 0.0000 9 6 5.9649 3.5154 -1.1642 10 8 5.1390 3.9822 -1.9199 11 7 7.2754 3.7569 -1.3658 12 6 8.2730 3.1935 -0.4527 13 6 8.7040 1.8390 -0.9533 14 1 8.2777 1.4382 -1.8610 15 6 9.6431 1.1120 -0.2530 16 7 10.0189 -0.0702 -0.6896 17 14 10.3808 1.8058 1.3167 18 1 9.5550 1.3885 2.4782 19 1 11.7641 1.2919 1.4828 20 1 10.4097 3.2883 1.2370 21 6 7.7024 4.5829 -2.4978 22 6 7.9377 3.7048 -3.6998 23 6 7.0177 3.3715 -4.6227 24 6 7.6660 2.5418 -5.5663 25 6 8.9414 2.4111 -5.1590 26 8 9.1001 3.1177 -4.0280 27 6 3.4346 1.3029 -0.0056 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2243 2.3566 -0.0005 32 1 1.4006 4.5173 -0.0011 33 1 5.9655 1.6720 -0.0890 34 1 5.8550 3.1263 0.9312 35 1 9.1376 3.8556 -0.4058 36 1 7.8388 3.0920 0.5420 37 1 10.6794 -0.5819 -0.1967 38 1 6.9266 5.3132 -2.7277 39 1 8.6256 5.1022 -2.2409 40 1 5.9830 3.6803 -4.6408 41 1 7.2215 2.0957 -6.4437 42 1 9.7074 1.8353 -5.6569 43 1 4.0432 0.4108 -0.0098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346307607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:06 Heat of formation + Delta-G solvation = -8.194011 kcal Electronic energy + Delta-G solvation = -28161.561586 eV Core-core repulsion = 24174.801401 eV Total energy + Delta-G solvation = -3986.760185 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -41.85222 -40.60441 -39.16842 -38.06960 -35.17199 -32.89877 -32.46152 -32.23343 -31.39660 -30.43943 -28.45654 -27.79045 -27.23997 -25.09042 -23.35874 -22.61438 -21.78534 -21.03611 -20.05703 -18.73749 -17.76122 -17.22224 -16.92228 -16.71155 -16.25901 -15.92991 -15.68539 -15.50886 -15.03328 -14.81381 -14.57373 -14.06961 -13.88545 -13.66159 -13.51320 -13.21875 -12.75610 -12.56320 -12.25961 -12.20529 -12.16746 -12.12204 -11.85844 -11.69475 -11.50980 -11.33276 -11.19903 -10.81028 -10.66337 -10.26399 -9.59141 -9.36334 -9.26724 -9.17261 -8.86109 -8.77507 -8.67549 -7.99664 -7.73284 -6.16255 -4.17159 1.20977 1.50184 2.33802 3.02746 3.15852 3.19699 3.27668 3.29484 3.34848 3.75683 3.81384 4.10333 4.30031 4.46832 4.64847 4.91317 4.91634 4.94793 5.11905 5.22351 5.22878 5.31057 5.32953 5.36269 5.56825 5.64201 5.70909 5.84440 5.89682 5.96262 6.04922 6.09048 6.17684 6.38098 6.41802 6.53913 6.61209 6.67545 6.72468 7.11887 7.18339 7.24903 7.47131 7.82911 8.08946 8.27167 8.43028 8.86897 8.95342 9.42655 10.96472 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.009958 B = 0.004143 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.002844 B = 6757.529827 C = 8035.292029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.163 3.837 4 C -0.272 4.272 5 C 0.137 3.863 6 N -0.478 5.478 7 C 0.189 3.811 8 C -0.092 4.092 9 C 0.533 3.467 10 O -0.545 6.545 11 N -0.591 5.591 12 C 0.206 3.794 13 C -0.533 4.533 14 H 0.079 0.921 15 C 0.078 3.922 16 N -0.890 5.890 17 Si 0.868 3.132 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.264 1.264 21 C 0.203 3.797 22 C -0.010 4.010 23 C -0.202 4.202 24 C -0.227 4.227 25 C -0.036 4.036 26 O -0.154 6.154 27 C -0.196 4.196 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.134 0.866 32 H 0.154 0.846 33 H 0.125 0.875 34 H 0.111 0.889 35 H 0.035 0.965 36 H 0.032 0.968 37 H 0.265 0.735 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.194 0.806 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.216 4.518 0.288 13.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.110 3.890 4 C -0.293 4.293 5 C -0.021 4.021 6 N -0.190 5.190 7 C 0.052 3.948 8 C -0.132 4.132 9 C 0.321 3.679 10 O -0.423 6.423 11 N -0.323 5.323 12 C 0.085 3.915 13 C -0.572 4.572 14 H 0.097 0.903 15 C -0.126 4.126 16 N -0.528 5.528 17 Si 0.694 3.306 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.189 1.189 21 C 0.079 3.921 22 C -0.062 4.062 23 C -0.223 4.223 24 C -0.246 4.246 25 C -0.105 4.105 26 O -0.048 6.048 27 C -0.217 4.217 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.151 0.849 32 H 0.171 0.829 33 H 0.143 0.857 34 H 0.129 0.871 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.122 0.878 39 H 0.106 0.894 40 H 0.160 0.840 41 H 0.156 0.844 42 H 0.211 0.789 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.755 5.215 0.133 13.781 hybrid contribution -0.280 -0.974 0.581 1.168 sum -13.036 4.241 0.714 13.727 Atomic orbital electron populations 1.23084 0.78194 1.04054 1.01472 1.86073 1.21554 1.26586 1.88120 1.19242 0.92306 0.84374 0.93044 1.22132 1.01055 0.93464 1.12620 1.22486 0.90237 0.96650 0.92715 1.67535 1.06454 1.31771 1.13251 1.20578 0.95515 0.87354 0.91319 1.20682 0.89253 1.03848 0.99428 1.19982 0.81928 0.80120 0.85872 1.90635 1.52029 1.51830 1.47818 1.47972 1.06361 1.50631 1.27317 1.19921 0.87441 0.95409 0.88776 1.21329 1.24174 0.99967 1.11692 0.90267 1.24847 0.95856 0.94590 0.97266 1.69896 1.31685 1.11745 1.39434 0.86987 0.79297 0.80035 0.84256 1.19891 1.21013 1.18879 1.19623 1.01050 0.89959 0.81466 1.22845 0.84046 1.00807 0.98534 1.21531 1.00326 1.03707 0.96695 1.21697 0.94722 1.05323 1.02862 1.23884 0.98832 0.99795 0.88006 1.84110 1.34542 1.50133 1.36004 1.21343 0.92004 0.99899 1.08446 0.92487 0.88098 0.92540 0.84850 0.82883 0.85733 0.87124 0.94693 0.94975 0.92513 0.87752 0.89413 0.84048 0.84383 0.78928 0.83792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.84 101.05 0.99 1.21 16 2 O -0.31 -4.04 10.51 -18.92 -0.20 -4.24 16 3 C 0.16 2.34 6.74 -38.81 -0.26 2.08 16 4 C -0.27 -3.39 9.11 -39.29 -0.36 -3.75 16 5 C 0.14 1.90 11.17 -17.59 -0.20 1.70 16 6 N -0.48 -8.25 9.22 -9.55 -0.09 -8.33 16 7 C 0.19 3.29 5.76 -82.64 -0.48 2.81 16 8 C -0.09 -1.65 4.65 -29.04 -0.14 -1.79 16 9 C 0.53 10.81 7.60 -10.99 -0.08 10.72 16 10 O -0.55 -11.96 14.91 5.55 0.08 -11.88 16 11 N -0.59 -11.93 2.44 -176.43 -0.43 -12.36 16 12 C 0.21 4.42 4.08 -5.19 -0.02 4.40 16 13 C -0.53 -13.79 9.84 -34.44 -0.34 -14.13 16 14 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 15 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 16 N -0.89 -25.68 13.96 55.43 0.77 -24.91 16 17 Si 0.87 19.54 27.47 -169.99 -4.67 14.87 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 21 C 0.20 3.71 5.98 -5.19 -0.03 3.68 16 22 C -0.01 -0.20 6.90 -35.62 -0.25 -0.45 16 23 C -0.20 -3.91 10.81 -39.70 -0.43 -4.34 16 24 C -0.23 -4.01 10.91 -39.70 -0.43 -4.44 16 25 C -0.04 -0.65 12.09 29.42 0.36 -0.30 16 26 O -0.15 -3.22 10.65 5.72 0.06 -3.16 16 27 C -0.20 -3.16 9.67 -39.30 -0.38 -3.54 16 28 H 0.06 0.41 7.71 -51.93 -0.40 0.01 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.38 7.71 -51.93 -0.40 -0.02 16 31 H 0.13 1.21 6.47 -52.49 -0.34 0.87 16 32 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.12 2.30 7.73 -51.93 -0.40 1.90 16 34 H 0.11 1.78 7.40 -51.93 -0.38 1.40 16 35 H 0.04 0.75 6.95 -51.93 -0.36 0.38 16 36 H 0.03 0.65 5.87 -51.93 -0.30 0.35 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.10 1.77 7.42 -51.93 -0.39 1.39 16 39 H 0.09 1.44 7.89 -51.93 -0.41 1.03 16 40 H 0.14 2.69 8.06 -52.49 -0.42 2.27 16 41 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 42 H 0.19 2.75 8.06 -52.49 -0.42 2.32 16 43 H 0.14 2.21 7.95 -52.49 -0.42 1.80 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -33.54 370.37 -6.53 -40.07 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -5.51 Total: 8.51 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -2.14 Total: -4.15 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.26 Total: -45.60 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.06 Total: -19.28 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.67 Total: 14.87 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.54 -6.53 -40.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346307607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.876 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds