Wall clock time and date at job start Tue Mar 31 2020 18:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35736 * 117.00062 * 2 1 4 4 C 1.39295 * 120.84426 * 359.97438 * 3 2 1 5 5 C 1.37949 * 119.09059 * 180.02562 * 4 3 2 6 6 N 1.31980 * 120.82499 * 359.97438 * 5 4 3 7 7 C 1.31945 * 121.86438 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.59060 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47293 * 305.00130 * 8 7 6 10 10 O 1.21283 * 119.99808 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00265 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99868 * 359.97438 * 11 9 8 13 13 C 1.50703 * 109.47289 * 89.99907 * 12 11 9 14 14 H 1.07994 * 119.99399 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99789 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99734 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00111 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47123 * 89.99915 * 17 15 13 19 19 H 1.48498 * 109.47161 * 209.99603 * 17 15 13 20 20 H 1.48497 * 109.47329 * 329.99749 * 17 15 13 21 21 C 1.46498 * 120.00377 * 179.97438 * 11 9 8 22 22 C 1.50704 * 109.47158 * 270.00187 * 21 11 9 23 23 C 1.34508 * 125.78966 * 89.71164 * 22 21 11 24 24 C 1.41389 * 106.84038 * 179.89105 * 23 22 21 25 25 C 1.34515 * 106.83869 * 0.37096 * 24 23 22 26 26 O 1.34298 * 125.78736 * 270.01953 * 22 21 11 27 27 C 1.37991 * 120.82314 * 0.26916 * 7 6 5 28 28 H 1.09002 * 109.47183 * 60.00323 * 1 2 3 29 29 H 1.08996 * 109.47228 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47347 * 299.99866 * 1 2 3 31 31 H 1.07999 * 120.45312 * 0.02601 * 4 3 2 32 32 H 1.07996 * 119.58776 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47462 * 184.99400 * 8 7 6 34 34 H 1.09005 * 109.46968 * 64.99835 * 8 7 6 35 35 H 1.09001 * 109.47060 * 210.00357 * 12 11 9 36 36 H 1.09004 * 109.47073 * 329.99846 * 12 11 9 37 37 H 0.97007 * 120.00011 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.46694 * 29.99578 * 21 11 9 39 39 H 1.08995 * 109.47258 * 149.99854 * 21 11 9 40 40 H 1.07998 * 126.58421 * 0.02562 * 23 22 21 41 41 H 1.07997 * 126.57555 * 180.16762 * 24 23 22 42 42 H 1.07998 * 125.78768 * 179.74826 * 25 24 23 43 43 H 1.07998 * 120.45685 * 179.70939 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3039 2.3887 -0.0005 5 6 1.9675 3.5981 -0.0011 6 7 3.2864 3.6458 -0.0005 7 6 4.0230 2.5511 0.0000 8 6 5.5256 2.6652 0.0000 9 6 5.9649 3.5154 -1.1642 10 8 5.1390 3.9822 -1.9199 11 7 7.2754 3.7569 -1.3658 12 6 8.2730 3.1935 -0.4527 13 6 8.7040 1.8390 -0.9533 14 1 8.2777 1.4382 -1.8610 15 6 9.6431 1.1120 -0.2530 16 7 10.0189 -0.0702 -0.6896 17 14 10.3808 1.8058 1.3167 18 1 9.5550 1.3885 2.4782 19 1 11.7641 1.2919 1.4828 20 1 10.4097 3.2883 1.2370 21 6 7.7024 4.5829 -2.4978 22 6 7.9377 3.7048 -3.6998 23 6 7.0177 3.3715 -4.6227 24 6 7.6660 2.5418 -5.5663 25 6 8.9414 2.4111 -5.1590 26 8 9.1001 3.1177 -4.0280 27 6 3.4346 1.3029 -0.0056 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2243 2.3566 -0.0005 32 1 1.4006 4.5173 -0.0011 33 1 5.9655 1.6720 -0.0890 34 1 5.8550 3.1263 0.9312 35 1 9.1376 3.8556 -0.4058 36 1 7.8388 3.0920 0.5420 37 1 10.6794 -0.5819 -0.1967 38 1 6.9266 5.3132 -2.7277 39 1 8.6256 5.1022 -2.2409 40 1 5.9830 3.6803 -4.6408 41 1 7.2215 2.0957 -6.4437 42 1 9.7074 1.8353 -5.6569 43 1 4.0432 0.4108 -0.0098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346307607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:05 Heat of formation + Delta-G solvation = -29.666782 kcal Electronic energy + Delta-G solvation = -28162.492715 eV Core-core repulsion = 24174.801401 eV Total energy + Delta-G solvation = -3987.691314 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.35656 -41.72876 -40.61934 -39.16365 -36.83181 -34.62864 -33.99582 -33.72388 -32.48304 -31.92702 -29.77452 -29.46838 -28.15350 -26.52554 -24.47504 -24.42526 -22.99238 -22.53079 -21.52852 -20.18025 -19.09996 -18.87947 -18.34043 -18.07103 -17.75618 -17.19228 -16.79495 -16.68948 -16.46374 -16.37454 -15.85340 -15.66697 -15.10681 -14.90775 -14.89206 -14.51745 -14.33420 -13.97470 -13.84930 -13.66734 -13.61968 -13.52405 -13.18838 -13.05616 -12.90563 -12.50522 -12.43095 -12.32085 -12.13281 -11.98794 -11.63142 -10.89281 -10.74509 -10.69616 -10.42109 -10.02815 -9.84648 -9.61989 -9.27678 -8.21177 -6.26872 0.07883 0.38966 0.83434 1.44270 1.46225 1.54768 1.66567 1.79795 2.12732 2.31316 2.40204 2.40797 2.85741 3.12870 3.29932 3.68803 3.75394 3.90477 3.94193 4.13892 4.16939 4.20457 4.23700 4.34909 4.36783 4.39370 4.44467 4.54849 4.66960 4.69421 4.75931 4.80509 4.86907 4.91762 4.96167 5.05531 5.06777 5.27952 5.49045 5.55411 5.64587 5.67643 6.22834 6.24219 6.34594 6.60110 6.79182 7.12593 7.27744 7.39444 8.95306 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.009958 B = 0.004143 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.002844 B = 6757.529827 C = 8035.292029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.160 3.840 4 C -0.257 4.257 5 C 0.130 3.870 6 N -0.507 5.507 7 C 0.170 3.830 8 C -0.088 4.088 9 C 0.529 3.471 10 O -0.564 6.564 11 N -0.594 5.594 12 C 0.211 3.789 13 C -0.524 4.524 14 H 0.027 0.973 15 C 0.020 3.980 16 N -0.944 5.944 17 Si 0.936 3.064 18 H -0.261 1.261 19 H -0.291 1.291 20 H -0.237 1.237 21 C 0.198 3.802 22 C -0.029 4.029 23 C -0.215 4.215 24 C -0.230 4.230 25 C -0.046 4.046 26 O -0.180 6.180 27 C -0.219 4.219 28 H 0.068 0.932 29 H 0.121 0.879 30 H 0.074 0.926 31 H 0.174 0.826 32 H 0.187 0.813 33 H 0.110 0.890 34 H 0.128 0.872 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.265 0.735 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.140 0.860 41 H 0.166 0.834 42 H 0.226 0.774 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.807 5.773 1.446 15.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.243 6.243 3 C 0.107 3.893 4 C -0.277 4.277 5 C -0.028 4.028 6 N -0.220 5.220 7 C 0.034 3.966 8 C -0.128 4.128 9 C 0.318 3.682 10 O -0.443 6.443 11 N -0.325 5.325 12 C 0.090 3.910 13 C -0.563 4.563 14 H 0.045 0.955 15 C -0.178 4.178 16 N -0.584 5.584 17 Si 0.759 3.241 18 H -0.185 1.185 19 H -0.217 1.217 20 H -0.160 1.160 21 C 0.075 3.925 22 C -0.080 4.080 23 C -0.235 4.235 24 C -0.249 4.249 25 C -0.114 4.114 26 O -0.075 6.075 27 C -0.240 4.240 28 H 0.087 0.913 29 H 0.139 0.861 30 H 0.093 0.907 31 H 0.191 0.809 32 H 0.204 0.796 33 H 0.128 0.872 34 H 0.146 0.854 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.134 0.866 39 H 0.126 0.874 40 H 0.158 0.842 41 H 0.184 0.816 42 H 0.242 0.758 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.377 6.491 1.282 15.827 hybrid contribution 0.040 -1.453 0.089 1.457 sum -14.337 5.037 1.371 15.258 Atomic orbital electron populations 1.23472 0.75500 1.06041 1.02882 1.86059 1.24340 1.26065 1.87794 1.19341 0.91882 0.85669 0.92457 1.22485 1.02884 0.92052 1.10270 1.23099 0.89396 0.98595 0.91679 1.67486 1.08195 1.31831 1.14507 1.20434 0.95090 0.88041 0.93055 1.20619 0.90430 1.02516 0.99249 1.20379 0.81744 0.79899 0.86192 1.90605 1.52428 1.52669 1.48602 1.48001 1.06168 1.50667 1.27629 1.19805 0.88319 0.93161 0.89738 1.21382 1.23495 1.01775 1.09632 0.95507 1.25723 0.96353 0.94673 1.01083 1.70069 1.33007 1.13739 1.41564 0.85890 0.77823 0.80738 0.79654 1.18545 1.21747 1.15991 1.19862 1.02366 0.89721 0.80583 1.23172 0.84073 1.01447 0.99344 1.21709 1.00278 1.04180 0.97332 1.22053 0.94591 1.04814 1.03419 1.24626 1.00075 0.99443 0.87256 1.84082 1.35243 1.50926 1.37281 1.21374 0.93449 0.99324 1.09818 0.91299 0.86070 0.90737 0.80907 0.79639 0.87217 0.85426 0.93350 0.92790 0.92630 0.86641 0.87428 0.84222 0.81601 0.75801 0.84592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.84 113.37 1.12 1.31 16 2 O -0.33 -8.12 10.51 -90.60 -0.95 -9.07 16 3 C 0.16 4.43 6.74 22.77 0.15 4.58 16 4 C -0.26 -5.73 9.11 22.46 0.20 -5.53 16 5 C 0.13 3.32 11.17 84.60 0.95 4.26 16 6 N -0.51 -17.15 9.22 -184.13 -1.70 -18.85 16 7 C 0.17 5.99 5.76 42.48 0.24 6.24 16 8 C -0.09 -3.23 4.65 29.10 0.14 -3.09 16 9 C 0.53 21.68 7.60 87.66 0.67 22.34 16 10 O -0.56 -25.02 14.91 -3.04 -0.05 -25.06 16 11 N -0.59 -23.94 2.44 -830.49 -2.03 -25.97 16 12 C 0.21 8.93 4.08 85.63 0.35 9.28 16 13 C -0.52 -27.70 9.84 25.60 0.25 -27.45 16 14 H 0.03 1.67 8.06 -2.91 -0.02 1.65 16 15 C 0.02 1.08 5.47 84.65 0.46 1.54 16 16 N -0.94 -56.21 13.96 21.45 0.30 -55.91 16 17 Si 0.94 39.66 27.47 68.60 1.88 41.54 16 18 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 19 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.24 -8.94 6.54 99.48 0.65 -8.29 16 21 C 0.20 7.22 5.98 85.63 0.51 7.74 16 22 C -0.03 -1.17 6.90 24.83 0.17 -1.00 16 23 C -0.21 -8.45 10.81 22.19 0.24 -8.21 16 24 C -0.23 -8.11 10.91 22.19 0.24 -7.87 16 25 C -0.05 -1.66 12.09 66.97 0.81 -0.85 16 26 O -0.18 -7.70 10.65 -2.46 -0.03 -7.73 16 27 C -0.22 -7.20 9.67 22.45 0.22 -6.99 16 28 H 0.07 0.76 7.71 -2.39 -0.02 0.74 16 29 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 0.73 7.71 -2.39 -0.02 0.71 16 31 H 0.17 2.38 6.47 -2.91 -0.02 2.36 16 32 H 0.19 3.34 8.06 -2.91 -0.02 3.31 16 33 H 0.11 4.27 7.73 -2.39 -0.02 4.25 16 34 H 0.13 4.06 7.40 -2.38 -0.02 4.05 16 35 H 0.05 1.95 6.95 -2.39 -0.02 1.93 16 36 H 0.05 2.08 5.87 -2.38 -0.01 2.06 16 37 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 38 H 0.12 3.91 7.42 -2.39 -0.02 3.89 16 39 H 0.11 3.43 7.89 -2.39 -0.02 3.41 16 40 H 0.14 5.45 8.06 -2.91 -0.02 5.42 16 41 H 0.17 4.74 8.06 -2.91 -0.02 4.72 16 42 H 0.23 6.23 8.06 -2.91 -0.02 6.21 16 43 H 0.14 4.48 7.95 -2.91 -0.02 4.46 16 Total: -1.00 -75.58 370.37 5.13 -70.44 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: 0.98 Total: 34.29 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 6.72 Total: -3.69 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -3.42 Total: -100.73 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -1.02 Total: -41.86 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 1.88 Total: 41.54 kcal Total: -75.58 5.13 -70.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346307607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.777 kcal (2) G-P(sol) polarization free energy of solvation -75.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds