Wall clock time and date at job start Tue Mar 31 2020 19:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34677 * 116.99666 * 2 1 4 4 O 1.21429 * 120.00284 * 359.97438 * 3 2 1 5 5 C 1.48076 * 119.99775 * 180.02562 * 3 2 1 6 6 C 1.39348 * 119.72724 * 184.50938 * 5 3 2 7 7 C 1.38587 * 119.05498 * 179.97438 * 6 5 3 8 8 C 1.38618 * 118.49087 * 359.97438 * 7 6 5 9 9 C 1.38584 * 119.36079 * 0.02562 * 8 7 6 10 10 C 1.50694 * 119.54666 * 179.97438 * 9 8 7 11 11 N 1.46900 * 109.47088 * 95.50826 * 10 9 8 12 12 C 1.46900 * 110.99915 * 288.05340 * 11 10 9 13 13 C 1.50699 * 109.47020 * 169.99955 * 12 11 10 14 14 H 1.08003 * 120.00309 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00061 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99985 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00138 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47242 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47111 * 120.00143 * 17 15 13 20 20 H 1.48499 * 109.47206 * 240.00170 * 17 15 13 21 21 C 1.46899 * 111.00060 * 164.10111 * 11 10 9 22 22 C 1.50700 * 109.46859 * 288.09215 * 21 11 10 23 23 C 1.34519 * 125.79024 * 96.00549 * 22 21 11 24 24 C 1.41376 * 106.84223 * 179.97438 * 23 22 21 25 25 C 1.34506 * 106.84300 * 359.97438 * 24 23 22 26 26 O 1.34300 * 108.42208 * 0.26400 * 25 24 23 27 27 N 1.31499 * 120.90377 * 0.27375 * 9 8 7 28 28 H 1.08998 * 109.47048 * 60.00315 * 1 2 3 29 29 H 1.09007 * 109.46845 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47392 * 300.00072 * 1 2 3 31 31 H 1.08000 * 120.46736 * 0.02562 * 6 5 3 32 32 H 1.08005 * 120.75253 * 179.97438 * 7 6 5 33 33 H 1.08007 * 120.32028 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.47592 * 335.50729 * 10 9 8 35 35 H 1.09005 * 109.47023 * 215.50583 * 10 9 8 36 36 H 1.08999 * 109.47386 * 289.99797 * 12 11 10 37 37 H 1.09001 * 109.47328 * 49.99909 * 12 11 10 38 38 H 0.96995 * 119.99918 * 180.02562 * 16 15 13 39 39 H 1.09000 * 109.47390 * 168.09886 * 21 11 10 40 40 H 1.08997 * 109.47078 * 48.09270 * 21 11 10 41 41 H 1.08005 * 126.57404 * 359.94538 * 23 22 21 42 42 H 1.08004 * 126.58178 * 180.02562 * 24 23 22 43 43 H 1.08004 * 125.79376 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4020 2.2184 -0.0005 5 6 3.5421 1.2775 -0.0006 6 6 4.1690 2.5184 0.0946 7 6 5.5537 2.5747 0.0933 8 6 6.2637 1.3880 -0.0026 9 6 5.5743 0.1893 -0.0941 10 6 6.3419 -1.1033 -0.1991 11 7 6.4826 -1.6990 1.1363 12 6 7.4352 -0.9372 1.9549 13 6 7.3718 -1.4214 3.3806 14 1 6.6916 -2.2154 3.6516 15 6 8.1822 -0.8509 4.3391 16 7 9.0101 0.1163 4.0093 17 14 8.1032 -1.4506 6.1064 18 1 7.0983 -2.5384 6.2156 19 1 9.4351 -1.9650 6.5147 20 1 7.7137 -0.3255 6.9940 21 6 6.8790 -3.1105 1.0439 22 6 5.7145 -3.9278 0.5468 23 6 5.4960 -4.2905 -0.7300 24 6 4.2993 -5.0430 -0.7430 25 6 3.8583 -5.0957 0.5266 26 8 4.7165 -4.4139 1.3027 27 7 4.2596 0.1648 -0.0966 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.5840 3.4232 0.1691 32 1 6.0680 3.5217 0.1653 33 1 7.3437 1.3975 -0.0058 34 1 7.3300 -0.9064 -0.6150 35 1 5.8046 -1.7931 -0.8500 36 1 8.4437 -1.0807 1.5670 37 1 7.1794 0.1218 1.9192 38 1 9.5805 0.5174 4.6835 39 1 7.1801 -3.4686 2.0284 40 1 7.7142 -3.2087 0.3504 41 1 6.1158 -4.0520 -1.5818 42 1 3.8297 -5.4906 -1.6065 43 1 2.9635 -5.5976 0.8642 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577932521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:21 Heat of formation + Delta-G solvation = -16.581270 kcal Electronic energy + Delta-G solvation = -28096.847327 eV Core-core repulsion = 24109.723443 eV Total energy + Delta-G solvation = -3987.123884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.08400 -40.70876 -39.56636 -36.90055 -36.37736 -32.85262 -32.56596 -32.45151 -31.95182 -29.90660 -27.99715 -27.53777 -26.16775 -24.61079 -24.04628 -22.35069 -21.31384 -21.12371 -20.51667 -19.76751 -18.12544 -17.03949 -16.92620 -16.52291 -16.35425 -16.00431 -15.81927 -15.53595 -14.93456 -14.75322 -14.43467 -13.99680 -13.73996 -13.63273 -13.30248 -13.15865 -12.73356 -12.52645 -12.45012 -12.29893 -12.23335 -12.14159 -11.83543 -11.67673 -11.26865 -10.88385 -10.77666 -10.73570 -10.72395 -10.54354 -10.01236 -9.77286 -9.52106 -9.31735 -9.26174 -8.90709 -8.51035 -8.04298 -7.43639 -6.10330 -4.10860 0.67419 1.38285 2.18828 2.50048 2.65359 2.99609 3.28182 3.36379 3.42402 3.49368 3.91887 4.21548 4.39671 4.78717 4.88956 5.01797 5.06483 5.11965 5.14291 5.15080 5.22165 5.27268 5.38582 5.42334 5.46956 5.56470 5.63678 5.72729 5.90549 6.02949 6.12506 6.15959 6.20260 6.24707 6.30576 6.32616 6.56748 6.70060 6.88660 7.08654 7.14941 7.60725 7.63120 7.72766 7.91027 8.03491 8.13195 8.40700 8.96972 9.53988 11.00420 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.007818 B = 0.004872 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3580.595732 B = 5745.543476 C = 7608.722132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.330 6.330 3 C 0.530 3.470 4 O -0.509 6.509 5 C 0.081 3.919 6 C -0.112 4.112 7 C -0.085 4.085 8 C -0.119 4.119 9 C 0.153 3.847 10 C 0.096 3.904 11 N -0.523 5.523 12 C 0.189 3.811 13 C -0.509 4.509 14 H 0.066 0.934 15 C 0.059 3.941 16 N -0.897 5.897 17 Si 0.895 3.105 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.133 3.867 22 C 0.029 3.971 23 C -0.228 4.228 24 C -0.214 4.214 25 C -0.052 4.052 26 O -0.163 6.163 27 N -0.415 5.415 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.048 0.952 35 H 0.088 0.912 36 H -0.004 1.004 37 H 0.038 0.962 38 H 0.261 0.739 39 H 0.108 0.892 40 H 0.058 0.942 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.110 -1.674 -11.638 14.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.244 6.244 3 C 0.374 3.626 4 O -0.397 6.397 5 C -0.056 4.056 6 C -0.133 4.133 7 C -0.110 4.110 8 C -0.139 4.139 9 C 0.011 3.989 10 C -0.033 4.033 11 N -0.248 5.248 12 C 0.065 3.935 13 C -0.548 4.548 14 H 0.084 0.916 15 C -0.143 4.143 16 N -0.537 5.537 17 Si 0.723 3.277 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.210 1.210 21 C 0.006 3.994 22 C -0.023 4.023 23 C -0.248 4.248 24 C -0.234 4.234 25 C -0.120 4.120 26 O -0.057 6.057 27 N -0.126 5.126 28 H 0.080 0.920 29 H 0.121 0.879 30 H 0.081 0.919 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.014 0.986 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.126 0.874 40 H 0.076 0.924 41 H 0.158 0.842 42 H 0.157 0.843 43 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -10.160 -1.994 -11.067 15.155 hybrid contribution 0.862 0.617 0.532 1.186 sum -9.297 -1.378 -10.534 14.118 Atomic orbital electron populations 1.23310 0.76551 1.03820 1.02317 1.86743 1.22805 1.31726 1.83149 1.20908 0.88056 0.81573 0.72088 1.90811 1.66089 1.36250 1.46546 1.19885 0.90481 0.90378 1.04830 1.21971 0.95417 0.97900 0.98020 1.21537 0.93193 0.99228 0.97059 1.22424 1.02286 0.92832 0.96366 1.21167 0.88745 0.95118 0.93825 1.21008 0.96801 0.92063 0.93386 1.61940 1.52158 1.00496 1.10248 1.19887 0.87799 0.93804 0.91998 1.21193 1.21289 1.19746 0.92532 0.91608 1.24940 0.95255 0.95015 0.99081 1.69944 1.24393 1.25309 1.34056 0.86475 0.77825 0.78837 0.84566 1.19536 1.21040 1.21033 1.20481 0.88567 0.87421 1.02938 1.22704 0.91283 0.98771 0.89520 1.21478 1.00302 1.06247 0.96774 1.21657 0.98629 1.05571 0.97513 1.23871 0.96846 1.01147 0.90176 1.84088 1.29644 1.53615 1.38378 1.67422 1.07996 1.29178 1.08038 0.91996 0.87945 0.91874 0.83742 0.83788 0.83777 0.93401 0.89422 0.98599 0.94402 0.92943 0.87412 0.92369 0.84220 0.84255 0.78933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.44 16 2 O -0.33 -5.20 10.39 -40.43 -0.42 -5.62 16 3 C 0.53 8.81 7.94 34.77 0.28 9.09 16 4 O -0.51 -8.63 16.12 -19.21 -0.31 -8.94 16 5 C 0.08 1.38 6.75 -83.02 -0.56 0.82 16 6 C -0.11 -1.64 9.63 -39.04 -0.38 -2.02 16 7 C -0.08 -1.16 10.17 -39.31 -0.40 -1.56 16 8 C -0.12 -1.85 8.29 -39.31 -0.33 -2.17 16 9 C 0.15 2.71 5.84 -82.61 -0.48 2.22 16 10 C 0.10 1.67 5.13 -4.98 -0.03 1.64 16 11 N -0.52 -10.79 4.39 -238.97 -1.05 -11.84 16 12 C 0.19 4.55 4.55 -4.98 -0.02 4.52 16 13 C -0.51 -13.71 8.28 -34.44 -0.29 -14.00 16 14 H 0.07 1.81 7.26 -52.48 -0.38 1.43 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -25.35 13.29 55.43 0.74 -24.61 16 17 Si 0.90 21.29 29.54 -169.99 -5.02 16.26 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C 0.13 2.48 5.35 -4.98 -0.03 2.46 16 22 C 0.03 0.51 6.28 -35.62 -0.22 0.29 16 23 C -0.23 -3.49 9.59 -39.70 -0.38 -3.87 16 24 C -0.21 -3.00 10.91 -39.71 -0.43 -3.43 16 25 C -0.05 -0.75 12.09 29.41 0.36 -0.40 16 26 O -0.16 -2.98 10.65 5.71 0.06 -2.92 16 27 N -0.41 -7.71 10.03 -6.07 -0.06 -7.77 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.14 1.82 7.65 -52.49 -0.40 1.42 16 32 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 33 H 0.14 2.07 8.03 -52.48 -0.42 1.65 16 34 H 0.05 0.74 7.95 -51.93 -0.41 0.33 16 35 H 0.09 1.47 6.23 -51.93 -0.32 1.14 16 36 H 0.00 -0.09 8.12 -51.93 -0.42 -0.51 16 37 H 0.04 0.96 6.12 -51.93 -0.32 0.64 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.11 2.20 6.59 -51.93 -0.34 1.85 16 40 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 41 H 0.14 1.85 8.06 -52.48 -0.42 1.43 16 42 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 43 H 0.19 2.00 8.06 -52.48 -0.42 1.58 16 LS Contribution 373.49 15.07 5.63 5.63 Total: -1.00 -32.78 373.49 -7.91 -40.69 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.53 Total: 2.58 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -1.94 Total: -3.45 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -0.37 Total: -44.22 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.67 Total: -17.49 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.78 -7.91 -40.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577932521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.106 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds