Wall clock time and date at job start Tue Mar 31 2020 17:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35950 * 116.99899 * 2 1 4 4 C 1.38333 * 120.06077 * 359.97438 * 3 2 1 5 5 C 1.38609 * 120.58931 * 180.02562 * 4 3 2 6 6 C 1.37875 * 120.24572 * 359.97438 * 5 4 3 7 7 C 1.39184 * 119.73301 * 0.02562 * 6 5 4 8 8 C 1.47659 * 134.22212 * 179.97438 * 7 6 5 9 9 C 1.47072 * 127.14148 * 0.02562 * 8 7 6 10 10 O 1.21652 * 119.99790 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00132 * 179.97438 * 9 8 7 12 12 C 1.46513 * 120.00011 * 179.97438 * 11 9 8 13 13 H 1.08998 * 112.84433 * 336.19843 * 12 11 9 14 14 C 1.53775 * 113.61299 * 107.50086 * 12 11 9 15 15 C 1.53775 * 87.08097 * 139.98195 * 14 12 11 16 16 H 1.08996 * 113.69638 * 220.00692 * 15 14 12 17 17 N 1.46506 * 113.61531 * 89.11408 * 15 14 12 18 18 C 1.36937 * 119.99708 * 107.50072 * 17 15 14 19 19 H 1.07996 * 120.00283 * 0.02562 * 18 17 15 20 20 C 1.38815 * 119.99959 * 179.97438 * 18 17 15 21 21 N 1.31611 * 120.00413 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 119.99649 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47414 * 89.99565 * 22 20 18 24 24 H 1.48504 * 109.46784 * 209.99684 * 22 20 18 25 25 H 1.48501 * 109.47148 * 329.99276 * 22 20 18 26 26 C 1.53777 * 113.61393 * 205.00012 * 12 11 9 27 27 C 1.36070 * 105.72588 * 180.26231 * 8 7 6 28 28 O 1.33778 * 109.82846 * 359.56735 * 27 8 7 29 29 C 1.34958 * 111.33618 * 0.46054 * 28 27 8 30 30 H 1.09006 * 109.46826 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47329 * 300.00032 * 1 2 3 32 32 H 1.08996 * 109.46531 * 60.00463 * 1 2 3 33 33 H 1.08001 * 119.70745 * 0.02562 * 4 3 2 34 34 H 1.07991 * 119.87872 * 179.97438 * 5 4 3 35 35 H 1.07994 * 120.13064 * 180.02562 * 6 5 4 36 36 H 0.96998 * 120.00734 * 359.97438 * 11 9 8 37 37 H 1.09003 * 113.61490 * 25.43642 * 14 12 11 38 38 H 1.09002 * 113.61432 * 254.53452 * 14 12 11 39 39 H 0.97000 * 120.00117 * 287.50478 * 17 15 14 40 40 H 0.97000 * 120.00415 * 180.02562 * 21 20 18 41 41 H 1.09003 * 113.61538 * 105.47218 * 26 12 11 42 42 H 1.08996 * 113.69047 * 334.57763 * 26 12 11 43 43 H 1.07997 * 125.08777 * 179.74124 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2940 2.3723 -0.0005 5 6 1.9118 3.6131 -0.0011 6 6 3.2876 3.7038 -0.0006 7 6 4.0560 2.5433 0.0000 8 6 5.5068 2.2688 0.0001 9 6 6.5973 3.2557 0.0002 10 8 6.3413 4.4449 -0.0003 11 7 7.8801 2.8425 0.0009 12 6 8.9664 3.8256 0.0004 13 1 8.6635 4.7907 -0.4058 14 6 9.7070 3.9258 1.3443 15 6 11.0055 4.0500 0.5299 16 1 11.8445 3.5004 0.9566 17 7 11.3489 5.4305 0.1798 18 6 12.3937 6.0560 0.8061 19 1 12.9649 5.5315 1.5578 20 6 12.7195 7.3639 0.4740 21 7 13.7240 7.9649 1.0756 22 14 11.7320 8.2708 -0.8267 23 1 10.5975 8.9797 -0.1822 24 1 12.6054 9.2562 -1.5135 25 1 11.2084 7.2976 -1.8186 26 6 10.2802 3.2917 -0.5943 27 6 5.6257 0.9133 -0.0053 28 8 4.4117 0.3513 0.0009 29 6 3.4380 1.2858 0.0005 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 0.2157 2.3114 -0.0005 34 1 1.3134 4.5120 -0.0019 35 1 3.7670 4.6715 -0.0006 36 1 8.0843 1.8942 0.0017 37 1 9.6520 3.0160 1.9421 38 1 9.4607 4.8226 1.9129 39 1 10.8361 5.9015 -0.4956 40 1 13.9514 8.8790 0.8438 41 1 10.4966 3.6766 -1.5909 42 1 10.3829 2.2086 -0.5273 43 1 6.5603 0.3721 -0.0106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020162001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:16 Heat of formation + Delta-G solvation = 1.922072 kcal Electronic energy + Delta-G solvation = -26883.882262 eV Core-core repulsion = 22897.560743 eV Total energy + Delta-G solvation = -3986.321519 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.93824 -39.97722 -39.75508 -38.06305 -37.23329 -34.22393 -33.15192 -32.32006 -30.72637 -30.37097 -29.41662 -27.71544 -25.25268 -25.15998 -23.77272 -23.10260 -22.66738 -22.03036 -20.38556 -19.24336 -18.40096 -18.16409 -17.59288 -17.10732 -16.86392 -16.17175 -16.08541 -15.87324 -15.52414 -15.27878 -14.88103 -14.67228 -14.28510 -14.02261 -13.65710 -13.34824 -13.08493 -12.76451 -12.74494 -12.63957 -12.27682 -12.13732 -12.09618 -11.80613 -11.70767 -11.62904 -10.96112 -10.86096 -10.40797 -10.35210 -10.13003 -10.00781 -9.80457 -9.60105 -9.03315 -8.96569 -8.84205 -8.21061 -7.32067 -5.79842 -3.16676 0.45113 0.91126 1.47372 2.22824 2.69867 3.09106 3.16026 3.38665 3.42655 3.45537 3.46996 4.00150 4.25173 4.40494 4.57749 4.58767 4.68269 4.75087 4.80447 4.85890 4.93809 4.98829 5.03067 5.05568 5.16802 5.18543 5.39358 5.56819 5.68319 5.73079 5.74928 5.96384 5.99142 6.05520 6.14772 6.20669 6.24629 6.39386 6.47732 6.54763 6.65237 6.86426 6.94119 7.51113 7.96503 8.21621 8.39264 9.16605 9.89076 10.07226 11.37908 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.026647 B = 0.002218 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.542429 B =12619.048033 C =13384.336162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.314 6.314 3 C 0.144 3.856 4 C -0.190 4.190 5 C -0.092 4.092 6 C -0.097 4.097 7 C -0.052 4.052 8 C -0.227 4.227 9 C 0.584 3.416 10 O -0.530 6.530 11 N -0.713 5.713 12 C 0.124 3.876 13 H 0.112 0.888 14 C -0.182 4.182 15 C 0.177 3.823 16 H 0.078 0.922 17 N -0.729 5.729 18 C -0.249 4.249 19 H 0.093 0.907 20 C 0.008 3.992 21 N -0.931 5.931 22 Si 0.882 3.118 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.276 1.276 26 C -0.165 4.165 27 C 0.070 3.930 28 O -0.173 6.173 29 C 0.018 3.982 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.394 0.606 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.363 0.637 40 H 0.260 0.740 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.914 -19.361 -3.382 33.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.099 3.901 4 C -0.209 4.209 5 C -0.110 4.110 6 C -0.115 4.115 7 C -0.054 4.054 8 C -0.232 4.232 9 C 0.371 3.629 10 O -0.408 6.408 11 N -0.363 5.363 12 C 0.020 3.980 13 H 0.130 0.870 14 C -0.224 4.224 15 C 0.064 3.936 16 H 0.096 0.904 17 N -0.370 5.370 18 C -0.379 4.379 19 H 0.111 0.889 20 C -0.188 4.188 21 N -0.578 5.578 22 Si 0.712 3.288 23 H -0.208 1.208 24 H -0.216 1.216 25 H -0.203 1.203 26 C -0.205 4.205 27 C 0.001 3.999 28 O -0.072 6.072 29 C -0.028 4.028 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.160 0.840 36 H 0.228 0.772 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.196 0.804 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -26.854 -18.867 -3.246 32.979 hybrid contribution -0.753 0.460 -0.875 1.243 sum -27.607 -18.407 -4.121 33.436 Atomic orbital electron populations 1.23115 0.77859 1.04282 1.01585 1.86143 1.21738 1.26067 1.88834 1.17651 0.86495 0.85599 1.00398 1.20978 0.99960 0.91068 1.08870 1.20901 0.94089 0.97125 0.98865 1.20680 0.92804 0.97987 1.00027 1.19207 0.91077 0.92863 1.02235 1.21071 0.93176 0.93523 1.15419 1.17093 0.81830 0.87463 0.76493 1.90809 1.83685 1.16704 1.49562 1.45940 1.05277 1.10066 1.75009 1.22710 0.83657 0.92912 0.98726 0.87012 1.24294 0.99606 1.01933 0.96591 1.20855 0.93755 0.86368 0.92579 0.90425 1.42543 1.37581 1.10113 1.46714 1.19085 1.05946 0.95822 1.17043 0.88947 1.24673 0.97949 0.96833 0.99382 1.69692 1.29963 1.13205 1.44896 0.86588 0.79911 0.79995 0.82291 1.20850 1.21616 1.20260 1.23926 0.95281 1.00453 1.00863 1.24531 0.87360 0.92194 0.95780 1.83888 1.13386 1.35256 1.74660 1.18588 0.87537 0.86640 1.10071 0.87968 0.92352 0.92362 0.84137 0.84637 0.84014 0.77198 0.90740 0.90737 0.80363 0.92952 0.90872 0.89824 0.76487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.98 10.50 -19.58 -0.21 -3.18 16 3 C 0.14 1.50 6.70 -39.12 -0.26 1.24 16 4 C -0.19 -1.59 9.02 -39.41 -0.36 -1.95 16 5 C -0.09 -0.83 10.03 -39.58 -0.40 -1.23 16 6 C -0.10 -1.15 9.88 -39.36 -0.39 -1.54 16 7 C -0.05 -0.67 6.29 -104.99 -0.66 -1.33 16 8 C -0.23 -2.75 6.31 -103.25 -0.65 -3.40 16 9 C 0.58 8.41 7.80 -12.68 -0.10 8.31 16 10 O -0.53 -9.87 15.88 5.23 0.08 -9.78 16 11 N -0.71 -8.58 5.34 -54.20 -0.29 -8.87 16 12 C 0.12 1.86 4.12 -67.12 -0.28 1.59 16 13 H 0.11 2.02 7.46 -51.93 -0.39 1.63 16 14 C -0.18 -2.97 7.68 -25.92 -0.20 -3.17 16 15 C 0.18 3.22 4.56 -67.12 -0.31 2.91 16 16 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 17 N -0.73 -16.99 5.11 -52.64 -0.27 -17.26 16 18 C -0.25 -6.96 10.45 -15.06 -0.16 -7.12 16 19 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 20 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 21 N -0.93 -29.13 13.97 55.49 0.78 -28.36 16 22 Si 0.88 22.33 27.74 -169.99 -4.71 17.61 16 23 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 26 C -0.17 -2.33 7.58 -25.92 -0.20 -2.53 16 27 C 0.07 0.61 11.52 29.95 0.35 0.96 16 28 O -0.17 -1.89 10.53 5.27 0.06 -1.83 16 29 C 0.02 0.22 7.33 -38.45 -0.28 -0.06 16 30 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 32 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 33 H 0.14 0.74 6.26 -52.49 -0.33 0.41 16 34 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 35 H 0.14 1.81 7.53 -52.49 -0.40 1.41 16 36 H 0.39 3.15 7.65 -40.82 -0.31 2.84 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.36 8.45 5.76 -40.82 -0.24 8.21 16 40 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 43 H 0.22 0.79 7.41 -52.49 -0.39 0.40 16 LS Contribution 364.97 15.07 5.50 5.50 Total: -1.00 -36.46 364.97 -7.45 -43.91 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -5.39 Total: 8.33 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -2.99 Total: -6.06 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.22 Total: -54.48 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.07 Total: -14.80 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.61 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.46 -7.45 -43.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020162001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.829 kcal (2) G-P(sol) polarization free energy of solvation -36.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds