Wall clock time and date at job start Tue Mar 31 2020 17:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35950 * 116.99899 * 2 1 4 4 C 1.38333 * 120.06077 * 359.97438 * 3 2 1 5 5 C 1.38609 * 120.58931 * 180.02562 * 4 3 2 6 6 C 1.37875 * 120.24572 * 359.97438 * 5 4 3 7 7 C 1.39184 * 119.73301 * 0.02562 * 6 5 4 8 8 C 1.47659 * 134.22212 * 179.97438 * 7 6 5 9 9 C 1.47072 * 127.14148 * 0.02562 * 8 7 6 10 10 O 1.21652 * 119.99790 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00132 * 179.97438 * 9 8 7 12 12 C 1.46513 * 120.00011 * 179.97438 * 11 9 8 13 13 H 1.08998 * 112.84433 * 336.19843 * 12 11 9 14 14 C 1.53775 * 113.61299 * 107.50086 * 12 11 9 15 15 C 1.53775 * 87.08097 * 139.98195 * 14 12 11 16 16 H 1.08996 * 113.69638 * 220.00692 * 15 14 12 17 17 N 1.46506 * 113.61531 * 89.11408 * 15 14 12 18 18 C 1.36937 * 119.99708 * 107.50072 * 17 15 14 19 19 H 1.07996 * 120.00283 * 0.02562 * 18 17 15 20 20 C 1.38815 * 119.99959 * 179.97438 * 18 17 15 21 21 N 1.31611 * 120.00413 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 119.99649 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47414 * 89.99565 * 22 20 18 24 24 H 1.48504 * 109.46784 * 209.99684 * 22 20 18 25 25 H 1.48501 * 109.47148 * 329.99276 * 22 20 18 26 26 C 1.53777 * 113.61393 * 205.00012 * 12 11 9 27 27 C 1.36070 * 105.72588 * 180.26231 * 8 7 6 28 28 O 1.33778 * 109.82846 * 359.56735 * 27 8 7 29 29 C 1.34958 * 111.33618 * 0.46054 * 28 27 8 30 30 H 1.09006 * 109.46826 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47329 * 300.00032 * 1 2 3 32 32 H 1.08996 * 109.46531 * 60.00463 * 1 2 3 33 33 H 1.08001 * 119.70745 * 0.02562 * 4 3 2 34 34 H 1.07991 * 119.87872 * 179.97438 * 5 4 3 35 35 H 1.07994 * 120.13064 * 180.02562 * 6 5 4 36 36 H 0.96998 * 120.00734 * 359.97438 * 11 9 8 37 37 H 1.09003 * 113.61490 * 25.43642 * 14 12 11 38 38 H 1.09002 * 113.61432 * 254.53452 * 14 12 11 39 39 H 0.97000 * 120.00117 * 287.50478 * 17 15 14 40 40 H 0.97000 * 120.00415 * 180.02562 * 21 20 18 41 41 H 1.09003 * 113.61538 * 105.47218 * 26 12 11 42 42 H 1.08996 * 113.69047 * 334.57763 * 26 12 11 43 43 H 1.07997 * 125.08777 * 179.74124 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2940 2.3723 -0.0005 5 6 1.9118 3.6131 -0.0011 6 6 3.2876 3.7038 -0.0006 7 6 4.0560 2.5433 0.0000 8 6 5.5068 2.2688 0.0001 9 6 6.5973 3.2557 0.0002 10 8 6.3413 4.4449 -0.0003 11 7 7.8801 2.8425 0.0009 12 6 8.9664 3.8256 0.0004 13 1 8.6635 4.7907 -0.4058 14 6 9.7070 3.9258 1.3443 15 6 11.0055 4.0500 0.5299 16 1 11.8445 3.5004 0.9566 17 7 11.3489 5.4305 0.1798 18 6 12.3937 6.0560 0.8061 19 1 12.9649 5.5315 1.5578 20 6 12.7195 7.3639 0.4740 21 7 13.7240 7.9649 1.0756 22 14 11.7320 8.2708 -0.8267 23 1 10.5975 8.9797 -0.1822 24 1 12.6054 9.2562 -1.5135 25 1 11.2084 7.2976 -1.8186 26 6 10.2802 3.2917 -0.5943 27 6 5.6257 0.9133 -0.0053 28 8 4.4117 0.3513 0.0009 29 6 3.4380 1.2858 0.0005 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 0.2157 2.3114 -0.0005 34 1 1.3134 4.5120 -0.0019 35 1 3.7670 4.6715 -0.0006 36 1 8.0843 1.8942 0.0017 37 1 9.6520 3.0160 1.9421 38 1 9.4607 4.8226 1.9129 39 1 10.8361 5.9015 -0.4956 40 1 13.9514 8.8790 0.8438 41 1 10.4966 3.6766 -1.5909 42 1 10.3829 2.2086 -0.5273 43 1 6.5603 0.3721 -0.0106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020162001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:13 Heat of formation + Delta-G solvation = -25.168198 kcal Electronic energy + Delta-G solvation = -26885.056984 eV Core-core repulsion = 22897.560743 eV Total energy + Delta-G solvation = -3987.496241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -43.71633 -41.04619 -40.53644 -39.36044 -37.95426 -35.82709 -34.55082 -33.46388 -32.24230 -31.41492 -30.22088 -28.17102 -26.56328 -26.51054 -25.10047 -24.22967 -23.57286 -23.10870 -21.37729 -20.55000 -19.76416 -19.22533 -18.86855 -17.79384 -17.61823 -17.42933 -16.99106 -16.55247 -16.46073 -16.24827 -16.13458 -15.93907 -15.75356 -15.18450 -14.73587 -14.71272 -14.31729 -14.03396 -13.81857 -13.71331 -13.38411 -13.31363 -13.24518 -12.92191 -12.53533 -12.50799 -12.28016 -12.23643 -12.22915 -11.86310 -11.79309 -11.36496 -11.08952 -10.93026 -10.92093 -10.04737 -9.76636 -9.32105 -8.96754 -8.04763 -5.37686 -0.29162 0.13510 0.64046 1.35069 1.38839 1.43987 1.52511 1.99269 2.14236 2.27337 2.45289 2.61706 3.25795 3.33058 3.43865 3.48851 3.68821 3.79799 3.83958 3.96386 4.07471 4.13242 4.24756 4.26175 4.28499 4.38591 4.41599 4.46464 4.75855 4.78382 4.85008 4.88401 5.00333 5.01710 5.11135 5.19831 5.22966 5.28264 5.40178 5.47608 5.59776 5.68129 5.78829 6.20935 6.29686 6.55989 7.05599 7.21677 7.83118 7.98790 9.16366 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.026647 B = 0.002218 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.542429 B =12619.048033 C =13384.336162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.332 6.332 3 C 0.141 3.859 4 C -0.185 4.185 5 C -0.080 4.080 6 C -0.132 4.132 7 C -0.074 4.074 8 C -0.269 4.269 9 C 0.585 3.415 10 O -0.585 6.585 11 N -0.693 5.693 12 C 0.129 3.871 13 H 0.077 0.923 14 C -0.172 4.172 15 C 0.152 3.848 16 H 0.079 0.921 17 N -0.738 5.738 18 C -0.229 4.229 19 H 0.065 0.935 20 C -0.061 4.061 21 N -0.980 5.980 22 Si 0.946 3.054 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.253 1.253 26 C -0.135 4.135 27 C 0.113 3.887 28 O -0.177 6.177 29 C -0.008 4.008 30 H 0.120 0.880 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.176 0.824 34 H 0.162 0.838 35 H 0.119 0.881 36 H 0.418 0.582 37 H 0.109 0.891 38 H 0.037 0.963 39 H 0.363 0.637 40 H 0.258 0.742 41 H 0.069 0.931 42 H 0.132 0.868 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.384 -22.739 -4.513 37.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.246 6.246 3 C 0.096 3.904 4 C -0.204 4.204 5 C -0.098 4.098 6 C -0.150 4.150 7 C -0.076 4.076 8 C -0.274 4.274 9 C 0.374 3.626 10 O -0.467 6.467 11 N -0.344 5.344 12 C 0.024 3.976 13 H 0.095 0.905 14 C -0.214 4.214 15 C 0.042 3.958 16 H 0.097 0.903 17 N -0.379 5.379 18 C -0.360 4.360 19 H 0.083 0.917 20 C -0.253 4.253 21 N -0.631 5.631 22 Si 0.774 3.226 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.177 1.177 26 C -0.175 4.175 27 C 0.044 3.956 28 O -0.076 6.076 29 C -0.054 4.054 30 H 0.138 0.862 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.194 0.806 34 H 0.180 0.820 35 H 0.137 0.863 36 H 0.257 0.743 37 H 0.127 0.873 38 H 0.056 0.944 39 H 0.196 0.804 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.150 0.850 43 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -29.367 -22.361 -4.390 37.171 hybrid contribution -0.092 1.333 -0.426 1.402 sum -29.459 -21.028 -4.816 36.513 Atomic orbital electron populations 1.23471 0.75474 1.06050 1.02910 1.86123 1.24242 1.25690 1.88579 1.17913 0.86324 0.86612 0.99601 1.21354 1.01569 0.89942 1.07510 1.21230 0.93112 0.98708 0.96710 1.20705 0.94282 0.97119 1.02916 1.19498 0.91913 0.93557 1.02627 1.20888 0.92289 0.94551 1.19624 1.17422 0.82736 0.87136 0.75324 1.90783 1.84504 1.19146 1.52244 1.45608 1.03823 1.10827 1.74142 1.22334 0.84941 0.92607 0.97748 0.90460 1.24194 0.98289 1.01921 0.97015 1.21217 0.94759 0.84358 0.95513 0.90275 1.42569 1.36537 1.12241 1.46561 1.19097 1.05833 0.95604 1.15493 0.91672 1.25420 0.99528 0.98061 1.02258 1.69853 1.32368 1.13541 1.47295 0.85544 0.78042 0.78886 0.80138 1.21360 1.21844 1.17749 1.23770 0.92324 1.02589 0.98788 1.25450 0.88142 0.91107 0.90862 1.83904 1.13943 1.35305 1.74451 1.18832 0.88469 0.86383 1.11711 0.86164 0.91001 0.90954 0.80631 0.82032 0.86260 0.74310 0.87314 0.94359 0.80370 0.93335 0.91184 0.84964 0.71176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.21 16 2 O -0.33 -5.59 10.50 -92.99 -0.98 -6.57 16 3 C 0.14 2.73 6.70 22.57 0.15 2.88 16 4 C -0.19 -2.72 9.02 22.38 0.20 -2.52 16 5 C -0.08 -1.38 10.03 22.27 0.22 -1.16 16 6 C -0.13 -3.29 9.88 22.41 0.22 -3.07 16 7 C -0.07 -1.93 6.29 -20.11 -0.13 -2.05 16 8 C -0.27 -6.26 6.31 -18.97 -0.12 -6.38 16 9 C 0.58 16.63 7.80 86.56 0.68 17.31 16 10 O -0.59 -22.82 15.88 -4.19 -0.07 -22.89 16 11 N -0.69 -14.98 5.34 -443.63 -2.37 -17.35 16 12 C 0.13 3.68 4.12 45.51 0.19 3.87 16 13 H 0.08 2.82 7.46 -2.39 -0.02 2.81 16 14 C -0.17 -5.41 7.68 31.12 0.24 -5.17 16 15 C 0.15 5.30 4.56 45.51 0.21 5.51 16 16 H 0.08 2.74 8.10 -2.39 -0.02 2.72 16 17 N -0.74 -34.34 5.11 -320.45 -1.64 -35.98 16 18 C -0.23 -13.07 10.45 84.03 0.88 -12.19 16 19 H 0.07 4.00 8.06 -2.91 -0.02 3.98 16 20 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 21 N -0.98 -63.44 13.97 21.65 0.30 -63.14 16 22 Si 0.95 47.12 27.74 68.60 1.90 49.02 16 23 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 24 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 25 H -0.25 -11.44 6.52 99.48 0.65 -10.79 16 26 C -0.14 -3.37 7.58 31.12 0.24 -3.13 16 27 C 0.11 1.62 11.52 67.32 0.78 2.40 16 28 O -0.18 -3.49 10.53 -4.07 -0.04 -3.53 16 29 C -0.01 -0.18 7.33 23.00 0.17 -0.01 16 30 H 0.12 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.07 0.28 7.66 -2.39 -0.02 0.26 16 32 H 0.07 0.27 7.66 -2.39 -0.02 0.26 16 33 H 0.18 1.20 6.26 -2.91 -0.02 1.19 16 34 H 0.16 1.80 8.06 -2.92 -0.02 1.77 16 35 H 0.12 3.40 7.53 -2.91 -0.02 3.38 16 36 H 0.42 4.73 7.65 -92.71 -0.71 4.02 16 37 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.36 16.76 5.76 -92.71 -0.53 16.22 16 40 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 41 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.13 2.06 8.12 -2.39 -0.02 2.04 16 43 H 0.27 0.40 7.41 -2.91 -0.02 0.38 16 Total: -1.00 -86.38 364.97 2.38 -84.00 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -0.23 Total: 22.13 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 5.50 Total: -5.69 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -3.71 Total: -116.46 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -1.09 Total: -32.99 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.90 Total: 49.02 kcal Total: -86.38 2.38 -84.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020162001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.833 kcal (2) G-P(sol) polarization free energy of solvation -86.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds