Wall clock time and date at job start Tue Mar 31 2020 18:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99973 * 2 1 4 4 C 1.53002 * 109.47228 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.47056 * 180.02562 * 4 3 2 6 6 O 1.21274 * 120.00386 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99710 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99964 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.49725 * 325.05988 * 8 7 5 10 10 C 1.53044 * 109.49948 * 204.99656 * 8 7 5 11 11 C 1.53040 * 109.53609 * 178.64862 * 10 8 7 12 12 C 1.53191 * 109.31327 * 61.36519 * 11 10 8 13 13 N 1.46925 * 108.77562 * 305.36286 * 12 11 10 14 14 C 1.34777 * 120.62933 * 233.58346 * 13 12 11 15 15 O 1.21279 * 120.00166 * 180.02562 * 14 13 12 16 16 C 1.50706 * 119.99762 * 0.02562 * 14 13 12 17 17 S 1.81003 * 109.46853 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99846 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00030 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99637 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00513 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99570 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46946 * 90.00549 * 22 20 18 24 24 H 1.48504 * 109.46826 * 210.00017 * 22 20 18 25 25 H 1.48496 * 109.47486 * 329.99998 * 22 20 18 26 26 C 1.46927 * 118.73993 * 53.86013 * 13 12 11 27 27 H 1.08999 * 109.47361 * 60.00014 * 1 2 3 28 28 H 1.09001 * 109.47289 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47494 * 300.00210 * 1 2 3 30 30 H 1.08994 * 109.47236 * 60.00111 * 3 2 1 31 31 H 1.09004 * 109.46982 * 299.99637 * 3 2 1 32 32 H 1.09007 * 109.46858 * 60.00231 * 4 3 2 33 33 H 1.08997 * 109.46939 * 300.00627 * 4 3 2 34 34 H 0.96996 * 120.00430 * 359.97438 * 7 5 4 35 35 H 1.08996 * 109.45843 * 58.62875 * 10 8 7 36 36 H 1.09002 * 109.45463 * 298.66640 * 10 8 7 37 37 H 1.08998 * 109.49731 * 301.40950 * 11 10 8 38 38 H 1.09004 * 109.51803 * 181.33167 * 11 10 8 39 39 H 1.08999 * 109.58690 * 185.56977 * 12 11 10 40 40 H 1.09006 * 109.70500 * 65.21887 * 12 11 10 41 41 H 1.09000 * 109.47318 * 299.99141 * 16 14 13 42 42 H 1.09000 * 109.47161 * 59.99772 * 16 14 13 43 43 H 0.96995 * 120.00407 * 180.02562 * 21 20 18 44 44 H 1.09006 * 109.58071 * 65.92673 * 26 13 12 45 45 H 1.08995 * 109.58576 * 186.35128 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1483 2.5614 0.0013 6 8 3.4355 3.5426 0.0008 7 7 5.4887 2.7023 0.0014 8 6 6.0846 4.0406 0.0026 9 1 5.4631 4.7161 -0.5853 10 6 7.4869 3.9760 -0.6071 11 6 8.0970 5.3792 -0.6372 12 6 8.2163 5.9106 0.7947 13 7 6.8967 5.8400 1.4368 14 6 6.3531 6.9316 2.0108 15 8 5.2633 6.8604 2.5381 16 6 7.0997 8.2407 1.9975 17 16 6.1155 9.5050 2.8395 18 6 7.1948 10.8887 2.6809 19 1 8.1431 10.7788 2.1761 20 6 6.8265 12.1197 3.2059 21 7 5.6713 12.2534 3.8225 22 14 7.9711 13.5866 3.0383 23 1 7.6656 14.3114 1.7787 24 1 7.7784 14.4993 4.1938 25 1 9.3789 13.1152 3.0093 26 6 6.1835 4.5555 1.4466 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8901 32 1 3.8574 0.6436 -0.8892 33 1 3.8567 0.6439 0.8908 34 1 6.0589 1.9176 0.0014 35 1 7.4235 3.5857 -1.6228 36 1 8.1149 3.3198 -0.0045 37 1 7.4565 6.0420 -1.2191 38 1 9.0862 5.3365 -1.0931 39 1 8.5574 6.9456 0.7731 40 1 8.9278 5.3030 1.3541 41 1 8.0534 8.1203 2.5114 42 1 7.2784 8.5466 0.9667 43 1 5.4139 13.1138 4.1890 44 1 6.7321 3.8377 2.0566 45 1 5.1829 4.6962 1.8552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070452802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:23 Heat of formation + Delta-G solvation = -124.205055 kcal Electronic energy + Delta-G solvation = -25707.940830 eV Core-core repulsion = 21851.593979 eV Total energy + Delta-G solvation = -3856.346850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.52887 -39.50914 -38.10416 -37.24433 -34.78176 -32.58255 -32.41464 -32.10461 -30.55291 -28.69349 -26.91753 -25.58416 -25.11627 -24.33340 -22.81737 -21.20452 -20.56983 -19.06262 -17.73900 -17.67867 -16.83081 -16.66286 -16.32205 -16.08006 -15.81161 -15.31134 -15.15137 -14.92609 -14.79358 -14.59734 -14.01202 -13.93923 -13.68304 -13.39504 -13.24614 -13.05729 -12.82107 -12.53077 -12.25648 -11.96410 -11.85387 -11.73517 -11.53620 -11.31220 -11.24673 -11.05478 -11.00755 -10.85868 -10.74367 -10.14221 -10.02476 -9.80225 -9.56340 -9.30803 -9.05424 -8.48315 -8.20069 -6.48378 -6.20007 -3.90634 2.34904 2.55666 2.99967 3.08006 3.23056 3.26656 3.30941 3.54408 3.66724 4.21209 4.33706 4.42913 4.55302 4.63821 4.66113 4.77354 4.82856 4.98230 5.02174 5.03447 5.08900 5.14868 5.16337 5.22889 5.30599 5.33083 5.42618 5.46542 5.52106 5.54573 5.65398 5.68023 5.74923 5.88258 5.94267 5.98005 6.11469 6.14604 6.63237 6.75567 7.16158 7.55363 7.60738 7.93985 8.36354 8.58422 9.24922 10.87381 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.002264 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.221794 B =12363.166487 C =13619.791867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.397 6.397 3 C 0.074 3.926 4 C -0.138 4.138 5 C 0.515 3.485 6 O -0.528 6.528 7 N -0.725 5.725 8 C 0.131 3.869 9 H 0.095 0.905 10 C -0.124 4.124 11 C -0.132 4.132 12 C 0.105 3.895 13 N -0.619 5.619 14 C 0.534 3.466 15 O -0.511 6.511 16 C -0.149 4.149 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.105 3.895 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.401 0.599 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.063 0.937 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.598 -25.933 -11.269 28.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C -0.003 4.003 4 C -0.178 4.178 5 C 0.301 3.699 6 O -0.403 6.403 7 N -0.377 5.377 8 C 0.025 3.975 9 H 0.113 0.887 10 C -0.162 4.162 11 C -0.171 4.171 12 C -0.018 4.018 13 N -0.356 5.356 14 C 0.322 3.678 15 O -0.384 6.384 16 C -0.300 4.300 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.019 4.019 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.236 0.764 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.419 -25.344 -10.372 27.388 hybrid contribution 2.185 0.815 -0.748 2.449 sum 2.604 -24.529 -11.120 27.058 Atomic orbital electron populations 1.22742 0.80439 1.02727 1.00419 1.87775 1.20215 1.28026 1.95623 1.22182 0.91769 0.84242 1.02123 1.21460 0.95702 0.95004 1.05657 1.20467 0.82370 0.91204 0.75890 1.90808 1.60727 1.40635 1.48120 1.45942 1.06649 1.08932 1.76204 1.21447 0.94616 0.84106 0.97317 0.88738 1.21791 0.94837 0.98223 1.01396 1.21896 1.01882 0.96014 0.97310 1.21761 0.84420 1.03136 0.92515 1.48039 1.19567 1.09437 1.58573 1.20372 0.85890 0.84445 0.77084 1.90713 1.20393 1.84227 1.43111 1.23551 1.03936 0.96922 1.05589 1.85462 1.25517 1.00188 1.72237 1.22856 1.06309 0.95859 1.43306 0.90942 1.24998 0.95697 0.98405 0.94525 1.70018 1.20248 1.25147 1.34811 0.86170 0.80310 0.81092 0.77922 1.20280 1.20761 1.19706 1.21916 0.99567 0.84783 0.95631 0.93893 0.89537 0.93767 0.92089 0.92284 0.88023 0.87896 0.76450 0.90985 0.91108 0.90850 0.89993 0.88895 0.91371 0.89245 0.89224 0.92183 0.91828 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.40 -3.71 10.70 -35.23 -0.38 -4.09 16 3 C 0.07 0.69 5.23 37.16 0.19 0.88 16 4 C -0.14 -1.01 6.07 -27.88 -0.17 -1.18 16 5 C 0.51 5.33 7.80 -10.99 -0.09 5.25 16 6 O -0.53 -8.19 15.64 5.56 0.09 -8.11 16 7 N -0.72 -5.75 5.08 -53.47 -0.27 -6.02 16 8 C 0.13 1.33 2.62 -67.58 -0.18 1.15 16 9 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 10 C -0.12 -0.86 5.35 -26.69 -0.14 -1.01 16 11 C -0.13 -1.05 6.08 -26.61 -0.16 -1.21 16 12 C 0.11 1.08 6.34 -3.71 -0.02 1.05 16 13 N -0.62 -8.98 2.97 -172.50 -0.51 -9.49 16 14 C 0.53 10.57 7.72 -10.98 -0.08 10.49 16 15 O -0.51 -12.36 15.27 5.56 0.08 -12.28 16 16 C -0.15 -3.08 4.50 36.01 0.16 -2.92 16 17 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 18 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.43 13.22 55.49 0.73 -25.69 16 22 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.11 1.37 6.04 -3.49 -0.02 1.35 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 31 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 32 H 0.10 0.55 8.14 -51.92 -0.42 0.12 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.40 1.74 8.60 -40.82 -0.35 1.39 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.99 5.93 -51.93 -0.31 0.68 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.69 7.94 -51.92 -0.41 1.27 16 42 H 0.09 1.70 7.69 -51.92 -0.40 1.30 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.10 1.65 7.00 -51.93 -0.36 1.29 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -38.09 384.71 -8.16 -46.24 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -7.26 Total: -1.11 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 0.80 Total: 2.15 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: -0.05 Total: -41.20 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.21 Total: -24.47 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.09 -8.16 -46.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070452802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.960 kcal (2) G-P(sol) polarization free energy of solvation -38.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds