Wall clock time and date at job start Tue Mar 31 2020 16:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46989 * 2 1 4 4 C 1.53002 * 109.46943 * 240.00160 * 2 1 3 5 5 O 1.45196 * 109.47120 * 119.99853 * 2 1 3 6 6 C 1.34644 * 116.99750 * 60.00078 * 5 2 1 7 7 O 1.21507 * 119.99930 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99827 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00258 * 179.97438 * 8 6 5 10 10 H 1.09004 * 112.85009 * 334.67148 * 9 8 6 11 11 C 1.53786 * 113.61381 * 105.86479 * 9 8 6 12 12 C 1.54050 * 86.98144 * 89.16531 * 11 9 8 13 13 H 1.08998 * 113.61325 * 270.88045 * 12 11 9 14 14 N 1.46498 * 113.69393 * 139.99219 * 12 11 9 15 15 C 1.34771 * 120.00302 * 107.46158 * 14 12 11 16 16 O 1.21287 * 120.00271 * 0.02562 * 15 14 12 17 17 C 1.50703 * 120.00586 * 180.02562 * 15 14 12 18 18 S 1.80995 * 109.47465 * 180.02562 * 17 15 14 19 19 C 1.76206 * 100.00052 * 179.97438 * 18 17 15 20 20 H 1.08008 * 119.99743 * 359.97438 * 19 18 17 21 21 C 1.38791 * 119.99945 * 179.97438 * 19 18 17 22 22 N 1.31626 * 120.00204 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99801 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47071 * 60.00227 * 23 21 19 25 25 H 1.48502 * 109.47238 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47236 * 300.00262 * 23 21 19 27 27 C 1.53773 * 113.61768 * 203.47515 * 9 8 6 28 28 H 1.09004 * 109.47306 * 299.99804 * 1 2 3 29 29 H 1.09003 * 109.47378 * 60.00136 * 1 2 3 30 30 H 1.09006 * 109.47255 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47084 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46954 * 299.99569 * 3 2 1 33 33 H 1.08998 * 109.47592 * 60.00181 * 3 2 1 34 34 H 1.09005 * 109.46853 * 299.99576 * 4 2 1 35 35 H 1.08994 * 109.47198 * 59.99893 * 4 2 1 36 36 H 1.08999 * 109.46961 * 179.97438 * 4 2 1 37 37 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 38 38 H 1.09004 * 113.61439 * 203.67013 * 11 9 8 39 39 H 1.09002 * 113.61266 * 334.57214 * 11 9 8 40 40 H 0.96999 * 120.00017 * 287.46394 * 14 12 11 41 41 H 1.08999 * 109.46836 * 300.00622 * 17 15 14 42 42 H 1.09000 * 109.46942 * 59.99722 * 17 15 14 43 43 H 0.97009 * 120.00044 * 179.97438 * 22 21 19 44 44 H 1.09000 * 113.61571 * 25.42974 * 27 9 8 45 45 H 1.09000 * 113.61926 * 156.25278 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4166 9 6 1.6739 -4.0668 2.5832 10 1 0.7449 -4.3095 2.0672 11 6 2.8114 -5.0638 2.3054 12 6 3.1790 -4.9346 3.7958 13 1 3.8837 -4.1294 4.0035 14 7 3.5648 -6.2030 4.4192 15 6 4.8549 -6.4349 4.7325 16 8 5.6965 -5.5934 4.4988 17 6 5.2520 -7.7399 5.3732 18 16 7.0375 -7.7480 5.6695 19 6 7.2188 -9.3401 6.4024 20 1 6.3543 -9.9727 6.5404 21 6 8.4726 -9.7813 6.8022 22 7 9.5260 -9.0101 6.6345 23 14 8.6647 -11.4689 7.5798 24 1 8.2062 -12.5091 6.6244 25 1 10.0927 -11.6995 7.9157 26 1 7.8478 -11.5394 8.8178 27 6 1.7113 -4.5479 4.0433 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7208 -1.2495 37 1 2.6275 -2.2368 3.0828 38 1 2.4622 -6.0580 2.0264 39 1 3.5754 -4.6777 1.6307 40 1 2.8917 -6.8759 4.6064 41 1 4.7261 -7.8541 6.3211 42 1 4.9895 -8.5646 4.7106 43 1 10.4022 -9.3184 6.9143 44 1 1.5879 -3.7455 4.7707 45 1 1.0608 -5.4003 4.2390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001522701921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:11 Heat of formation + Delta-G solvation = -103.898701 kcal Electronic energy + Delta-G solvation = -25346.662862 eV Core-core repulsion = 21491.196562 eV Total energy + Delta-G solvation = -3855.466301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.18795 -40.05458 -38.47368 -37.02997 -34.66872 -33.92069 -32.44158 -32.32188 -29.15351 -27.75953 -27.70825 -26.05251 -25.54725 -24.77898 -22.77971 -20.69792 -20.25989 -19.84856 -18.54121 -17.82849 -16.97995 -16.53218 -16.40710 -16.22779 -15.75950 -15.03561 -14.83431 -14.80928 -14.71228 -14.12688 -14.10239 -13.71446 -13.31033 -13.12303 -12.86979 -12.82160 -12.72220 -12.53165 -12.26478 -12.24242 -12.21359 -11.98744 -11.77913 -11.64337 -11.09257 -11.05990 -11.04172 -10.88822 -10.74673 -10.67670 -10.32792 -9.83200 -9.50550 -9.39363 -9.07158 -8.88852 -8.25372 -6.51179 -6.22344 -3.93219 1.83644 2.54639 3.02075 3.03074 3.22931 3.27111 3.30688 3.70080 3.78704 4.09108 4.19718 4.26744 4.36287 4.41527 4.55207 4.65043 4.76785 5.06730 5.11739 5.12768 5.16422 5.19426 5.30111 5.33972 5.37310 5.40713 5.48162 5.51320 5.55586 5.62949 5.64495 5.78006 5.83459 5.87575 5.94227 6.00359 6.12084 6.17178 6.26628 6.61293 7.11196 7.58306 7.67539 8.10119 8.34078 8.57773 9.22827 10.84982 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.033786 B = 0.001777 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.554370 B =15753.780448 C =16188.173908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.364 6.364 6 C 0.654 3.346 7 O -0.568 6.568 8 N -0.693 5.693 9 C 0.140 3.860 10 H 0.111 0.889 11 C -0.165 4.165 12 C 0.126 3.874 13 H 0.115 0.885 14 N -0.728 5.728 15 C 0.533 3.467 16 O -0.517 6.517 17 C -0.155 4.155 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.152 4.152 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.408 0.592 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.082 0.918 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.207 16.605 -11.204 29.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.242 4.242 5 O -0.279 6.279 6 C 0.408 3.592 7 O -0.457 6.457 8 N -0.352 5.352 9 C 0.035 3.965 10 H 0.129 0.871 11 C -0.206 4.206 12 C 0.020 3.980 13 H 0.132 0.868 14 N -0.381 5.381 15 C 0.319 3.681 16 O -0.391 6.391 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.191 4.191 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.244 0.756 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.234 0.766 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.101 0.899 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.936 17.849 -12.032 29.340 hybrid contribution -0.882 -2.210 1.100 2.621 sum -20.818 15.639 -10.932 28.240 Atomic orbital electron populations 1.22519 0.93984 1.05051 1.02482 1.22086 0.94333 0.91553 0.82066 1.21869 1.02441 0.92441 1.03113 1.22523 1.01760 1.03488 0.96383 1.86316 1.71500 1.23539 1.46526 1.18033 0.78624 0.80469 0.82123 1.90897 1.41205 1.70524 1.43036 1.44404 1.55240 1.11721 1.23804 1.21633 0.99120 0.78415 0.97315 0.87078 1.24058 0.98588 1.00021 0.97906 1.22545 0.95074 0.88178 0.92207 0.86764 1.45961 1.09194 1.18585 1.64392 1.20368 0.81730 0.88713 0.77278 1.90700 1.49660 1.46566 1.52176 1.23543 1.07471 0.96635 1.02870 1.85399 0.94683 1.23606 1.79676 1.22828 0.96596 1.02307 1.46750 0.90968 1.24989 0.94817 0.98309 0.95445 1.70007 0.99214 1.36480 1.44578 0.86222 0.77350 0.82429 0.79488 1.19939 1.20806 1.19945 1.23767 0.97138 1.02245 0.95925 0.92187 0.91129 0.89377 0.91331 0.90113 0.91449 0.89342 0.91128 0.92024 0.75618 0.88419 0.90370 0.76625 0.89191 0.89191 0.92118 0.89908 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 8.37 37.16 0.31 -1.11 16 2 C 0.14 1.13 1.13 -90.62 -0.10 1.03 16 3 C -0.14 -0.84 8.85 37.16 0.33 -0.51 16 4 C -0.18 -1.55 8.37 37.16 0.31 -1.24 16 5 O -0.36 -3.69 9.94 -40.34 -0.40 -4.09 16 6 C 0.65 7.10 8.06 54.06 0.44 7.53 16 7 O -0.57 -7.21 11.50 -19.28 -0.22 -7.43 16 8 N -0.69 -6.14 5.27 -57.93 -0.31 -6.44 16 9 C 0.14 1.15 4.29 -67.12 -0.29 0.86 16 10 H 0.11 0.95 7.50 -51.93 -0.39 0.56 16 11 C -0.17 -1.60 7.70 -25.77 -0.20 -1.80 16 12 C 0.13 1.31 4.13 -66.98 -0.28 1.03 16 13 H 0.11 1.40 7.46 -51.93 -0.39 1.01 16 14 N -0.73 -8.89 5.36 -52.88 -0.28 -9.18 16 15 C 0.53 9.55 7.85 -10.99 -0.09 9.47 16 16 O -0.52 -11.41 15.46 5.55 0.09 -11.32 16 17 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 19 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 20 H 0.07 1.92 7.80 -52.48 -0.41 1.52 16 21 C 0.07 2.09 5.49 -17.44 -0.10 2.00 16 22 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 23 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 C -0.15 -1.05 7.57 -25.92 -0.20 -1.25 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.87 5.88 -51.93 -0.31 0.57 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.94 5.88 -51.93 -0.31 0.64 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.41 3.06 8.81 -40.82 -0.36 2.70 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.40 3.64 8.73 -40.82 -0.36 3.29 16 41 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 42 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.10 0.56 8.12 -51.93 -0.42 0.14 16 LS Contribution 385.88 15.07 5.82 5.82 Total: -1.00 -35.54 385.88 -8.30 -43.84 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.14 Total: 3.42 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 0.66 Total: -1.70 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.15 Total: -40.96 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.54 Total: -22.85 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.54 -8.30 -43.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522701921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.062 kcal (2) G-P(sol) polarization free energy of solvation -35.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds